RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AHDC1Q5TGY3 1603 aaPredicted RBP18.72■□□□□ 0.59
CLK3-224ENST00000568605 STK26Q9P289 416 aa18.72■□□□□ 0.59
CLK3-224ENST00000568605 MST1RQ04912 1400 aa18.72■□□□□ 0.59
CLK3-224ENST00000568605 KIF1AQ12756 1690 aa18.72■□□□□ 0.59
CLK3-224ENST00000568605 QRICH2Q9H0J4 1663 aa18.71■□□□□ 0.59
CLK3-224ENST00000568605 SLAIN2Q9P270 581 aa18.7■□□□□ 0.58
CLK3-224ENST00000568605 COL16A1Q07092 1604 aaPredicted RBP18.69■□□□□ 0.58
CLK3-224ENST00000568605 L3MBTL2Q969R5 705 aa18.68■□□□□ 0.58
CLK3-224ENST00000568605 SIRT1Q96EB6 747 aa18.68■□□□□ 0.58
CLK3-224ENST00000568605 CLSPNQ9HAW4 1339 aa18.67■□□□□ 0.58
CLK3-224ENST00000568605 SHPRHQ149N8 1683 aa18.66■□□□□ 0.58
CLK3-224ENST00000568605 HSPA1LP34931 641 aa18.66■□□□□ 0.58
CLK3-224ENST00000568605 PLEKHH1Q9ULM0 1364 aa18.65■□□□□ 0.58
CLK3-224ENST00000568605 POGKQ9P215 609 aa18.64■□□□□ 0.57
CLK3-224ENST00000568605 C1orf167Q5SNV9 1468 aa18.64■□□□□ 0.57
CLK3-224ENST00000568605 WAPLQ7Z5K2 1190 aa18.62■□□□□ 0.57
CLK3-224ENST00000568605 PRAM1Q96QH2 718 aa18.62■□□□□ 0.57
CLK3-224ENST00000568605 TRAK1Q9UPV9 953 aa18.62■□□□□ 0.57
CLK3-224ENST00000568605 USP32Q8NFA0 1604 aa18.62■□□□□ 0.57
CLK3-224ENST00000568605 RALGAPBQ86X10 1494 aa18.61■□□□□ 0.57
CLK3-224ENST00000568605 EIF3AQ14152 1382 aaKnown RBP18.61■□□□□ 0.57
CLK3-224ENST00000568605 MED1Q15648 1581 aaPredicted RBP18.6■□□□□ 0.57
CLK3-224ENST00000568605 ROCK2O75116 1388 aaKnown RBP18.6■□□□□ 0.57
CLK3-224ENST00000568605 TOPAZ1Q8N9V7 1692 aa18.59■□□□□ 0.57
CLK3-224ENST00000568605 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
CLK3-224ENST00000568605 BRINP3Q76B58 766 aa18.58■□□□□ 0.56
CLK3-224ENST00000568605 ANKARQ7Z5J8 1434 aa18.57■□□□□ 0.56
CLK3-224ENST00000568605 SAFB2Q14151 953 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLK3-224ENST00000568605 NBPF1Q3BBV0 1214 aa18.55■□□□□ 0.56
CLK3-224ENST00000568605 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
CLK3-224ENST00000568605 GPRASP1Q5JY77 1395 aa18.54■□□□□ 0.56
CLK3-224ENST00000568605 JCADQ9P266 1359 aa18.54■□□□□ 0.56
CLK3-224ENST00000568605 MINK1Q8N4C8 1332 aaPredicted RBP18.52■□□□□ 0.56
CLK3-224ENST00000568605 MARF1Q9Y4F3 1742 aaKnown RBP18.52■□□□□ 0.56
CLK3-224ENST00000568605 COL22A1Q8NFW1 1626 aaPredicted RBP18.52■□□□□ 0.55
CLK3-224ENST00000568605 CENPJQ9HC77 1338 aaPredicted RBP18.51■□□□□ 0.55
CLK3-224ENST00000568605 ESCO1Q5FWF5 840 aa18.51■□□□□ 0.55
CLK3-224ENST00000568605 TIMELESSQ9UNS1 1208 aa18.51■□□□□ 0.55
CLK3-224ENST00000568605 NPHP3Q7Z494 1330 aa18.5■□□□□ 0.55
CLK3-224ENST00000568605 ATP7BP35670 1465 aa18.5■□□□□ 0.55
CLK3-224ENST00000568605 NUTM2FA1L443 756 aa18.49■□□□□ 0.55
CLK3-224ENST00000568605 HIRIP3Q9BW71 556 aaPredicted RBP18.49■□□□□ 0.55
CLK3-224ENST00000568605 PXDNQ92626 1479 aa18.49■□□□□ 0.55
CLK3-224ENST00000568605 TRPM3Q9HCF6 1732 aaPredicted RBP18.49■□□□□ 0.55
CLK3-224ENST00000568605 NBPF8Q3BBV2 869 aa18.48■□□□□ 0.55
CLK3-224ENST00000568605 ORAI2Q96SN7 254 aa18.48■□□□□ 0.55
CLK3-224ENST00000568605 ABCA3Q99758 1704 aa18.47■□□□□ 0.55
CLK3-224ENST00000568605 WASLO00401 505 aaPredicted RBP18.47■□□□□ 0.55
CLK3-224ENST00000568605 CARD11Q9BXL7 1154 aa18.46■□□□□ 0.55
CLK3-224ENST00000568605 LRRC59Q96AG4 307 aaKnown RBP18.45■□□□□ 0.54
CLK3-224ENST00000568605 SPATA31A6Q5VVP1 1343 aa18.45■□□□□ 0.54
CLK3-224ENST00000568605 AKAP12Q02952 1782 aa18.45■□□□□ 0.54
CLK3-224ENST00000568605 ALS2Q96Q42 1657 aa18.44■□□□□ 0.54
CLK3-224ENST00000568605 DISP3Q9P2K9 1392 aa18.44■□□□□ 0.54
CLK3-224ENST00000568605 PHF8Q9UPP1 1060 aa18.44■□□□□ 0.54
CLK3-224ENST00000568605 SOS2Q07890 1332 aaPredicted RBP18.44■□□□□ 0.54
CLK3-224ENST00000568605 SBNO2Q9Y2G9 1366 aa18.43■□□□□ 0.54
CLK3-224ENST00000568605 PNPLA6Q8IY17 1366 aa18.42■□□□□ 0.54
CLK3-224ENST00000568605 DDX17Q92841 729 aaKnown RBP18.41■□□□□ 0.54
CLK3-224ENST00000568605 FOXO3O43524 673 aa18.4■□□□□ 0.54
CLK3-224ENST00000568605 PHF23Q9BUL5 403 aaPredicted RBP18.4■□□□□ 0.54
CLK3-224ENST00000568605 EVC2Q86UK5 1308 aa18.4■□□□□ 0.54
CLK3-224ENST00000568605 TNS3Q68CZ2 1445 aa18.4■□□□□ 0.54
CLK3-224ENST00000568605 LRP6O75581 1613 aa18.39■□□□□ 0.53
CLK3-224ENST00000568605 CDK19Q9BWU1 502 aa18.39■□□□□ 0.53
CLK3-224ENST00000568605 CRYBG1Q9Y4K1 1723 aa18.39■□□□□ 0.53
CLK3-224ENST00000568605 PRR36Q9H6K5 1346 aa18.39■□□□□ 0.53
CLK3-224ENST00000568605 MON2Q7Z3U7 1717 aa18.38■□□□□ 0.53
CLK3-224ENST00000568605 SRPK2P78362 688 aaKnown RBP18.38■□□□□ 0.53
CLK3-224ENST00000568605 PSME1Q06323 249 aa18.37■□□□□ 0.53
CLK3-224ENST00000568605 NUDT16Q96DE0 195 aaKnown RBP18.37■□□□□ 0.53
CLK3-224ENST00000568605 PPIP5K1Q6PFW1 1433 aa18.37■□□□□ 0.53
CLK3-224ENST00000568605 SBNO1A3KN83 1393 aa18.36■□□□□ 0.53
CLK3-224ENST00000568605 PHRF1Q9P1Y6 1649 aaKnown RBP18.35■□□□□ 0.53
CLK3-224ENST00000568605 ARHGEF10O15013 1369 aa18.35■□□□□ 0.53
CLK3-224ENST00000568605 NGDNQ8NEJ9 315 aaKnown RBP18.35■□□□□ 0.53
CLK3-224ENST00000568605 PMFBP1Q8TBY8 1022 aa18.35■□□□□ 0.53
CLK3-224ENST00000568605 ATAD2Q6PL18 1390 aa18.34■□□□□ 0.53
CLK3-224ENST00000568605 USP47Q96K76 1375 aa18.34■□□□□ 0.53
CLK3-224ENST00000568605 XPCQ01831 940 aaPredicted RBP18.34■□□□□ 0.53
CLK3-224ENST00000568605 MEX3CQ5U5Q3 659 aaKnown RBP18.34■□□□□ 0.53
CLK3-224ENST00000568605 KRT28Q7Z3Y7 464 aa18.34■□□□□ 0.53
CLK3-224ENST00000568605 CCDC61Q9Y6R9 512 aa18.34■□□□□ 0.53
CLK3-224ENST00000568605 NRKQ7Z2Y5 1582 aa18.34■□□□□ 0.53
CLK3-224ENST00000568605 POLR3AO14802 1390 aaPredicted RBP18.33■□□□□ 0.53
CLK3-224ENST00000568605 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.32■□□□□ 0.52
CLK3-224ENST00000568605 PLCH1Q4KWH8 1693 aa18.32■□□□□ 0.52
CLK3-224ENST00000568605 SPATA31A3Q5VYP0 1347 aa18.32■□□□□ 0.52
CLK3-224ENST00000568605 SLC24A1O60721 1099 aa18.32■□□□□ 0.52
CLK3-224ENST00000568605 NWD2Q9ULI1 1742 aa18.32■□□□□ 0.52
CLK3-224ENST00000568605 CABP2Q9NPB3 220 aa18.31■□□□□ 0.52
CLK3-224ENST00000568605 NUTM2BA6NNL0 878 aaPredicted RBP18.3■□□□□ 0.52
CLK3-224ENST00000568605 NUTM2EB1AL46 878 aaPredicted RBP18.3■□□□□ 0.52
CLK3-224ENST00000568605 NUTM2AQ8IVF1 878 aaPredicted RBP18.3■□□□□ 0.52
CLK3-224ENST00000568605 PLEKHG3A1L390 1219 aa18.28■□□□□ 0.52
CLK3-224ENST00000568605 BRD4O60885 1362 aaPredicted RBP18.28■□□□□ 0.52
CLK3-224ENST00000568605 PIK3C2AO00443 1686 aa18.28■□□□□ 0.52
CLK3-224ENST00000568605 ACEP12821 1306 aa18.27■□□□□ 0.52
CLK3-224ENST00000568605 MYOM1P52179 1685 aa18.27■□□□□ 0.52
CLK3-224ENST00000568605 USP54Q70EL1 1684 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms