RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 IFT172Q9UG01 1749 aa15.74■□□□□ 0.11
SF3B3-205ENST00000564899 AMOTL2Q9Y2J4 779 aa15.74■□□□□ 0.11
SF3B3-205ENST00000564899 RALGAPBQ86X10 1494 aa15.73■□□□□ 0.11
SF3B3-205ENST00000564899 PPLO60437 1756 aa15.72■□□□□ 0.11
SF3B3-205ENST00000564899 NRXN1Q9ULB1 1477 aa15.72■□□□□ 0.11
SF3B3-205ENST00000564899 ADGRF5Q8IZF2 1346 aa15.72■□□□□ 0.11
SF3B3-205ENST00000564899 VGFO15240 615 aaPredicted RBP15.71■□□□□ 0.11
SF3B3-205ENST00000564899 C8orf37Q96NL8 207 aa15.71■□□□□ 0.11
SF3B3-205ENST00000564899 PIK3R4Q99570 1358 aa15.71■□□□□ 0.11
SF3B3-205ENST00000564899 PNPLA6Q8IY17 1366 aa15.7■□□□□ 0.1
SF3B3-205ENST00000564899 PIK3C2GO75747 1445 aa15.69■□□□□ 0.1
SF3B3-205ENST00000564899 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.69■□□□□ 0.1
SF3B3-205ENST00000564899 ROCK2O75116 1388 aaKnown RBP15.69■□□□□ 0.1
SF3B3-205ENST00000564899 METP08581 1390 aa15.69■□□□□ 0.1
SF3B3-205ENST00000564899 DCCP43146 1447 aa15.68■□□□□ 0.1
SF3B3-205ENST00000564899 TRPM1Q7Z4N2 1603 aa15.68■□□□□ 0.1
SF3B3-205ENST00000564899 NALCNQ8IZF0 1738 aa15.68■□□□□ 0.1
SF3B3-205ENST00000564899 QTRT2Q9H974 415 aaKnown RBP15.68■□□□□ 0.1
SF3B3-205ENST00000564899 HDGFP51858 240 aaKnown RBP15.67■□□□□ 0.1
SF3B3-205ENST00000564899 SETBP1Q9Y6X0 1596 aa15.66■□□□□ 0.1
SF3B3-205ENST00000564899 GPRASP1Q5JY77 1395 aa15.66■□□□□ 0.1
SF3B3-205ENST00000564899 CARD11Q9BXL7 1154 aa15.66■□□□□ 0.1
SF3B3-205ENST00000564899 NBPF1Q3BBV0 1214 aa15.65■□□□□ 0.1
SF3B3-205ENST00000564899 ADAMTS2O95450 1211 aa15.64■□□□□ 0.09
SF3B3-205ENST00000564899 RBM6P78332 1123 aaKnown RBP15.64■□□□□ 0.09
SF3B3-205ENST00000564899 CFAP70Q5T0N1 1121 aa15.64■□□□□ 0.09
SF3B3-205ENST00000564899 KIAA1210Q9ULL0 1709 aa15.64■□□□□ 0.09
SF3B3-205ENST00000564899 ADGRL3Q9HAR2 1447 aa15.63■□□□□ 0.09
SF3B3-205ENST00000564899 EIF4G2P78344 907 aaKnown RBP eCLIP15.63■□□□□ 0.09
SF3B3-205ENST00000564899 C14orf93Q9H972 538 aaKnown RBP15.63■□□□□ 0.09
SF3B3-205ENST00000564899 USP47Q96K76 1375 aa15.62■□□□□ 0.09
SF3B3-205ENST00000564899 LAMC1P11047 1609 aa15.62■□□□□ 0.09
SF3B3-205ENST00000564899 ZNF316A6NFI3 1004 aaPredicted RBP15.62■□□□□ 0.09
SF3B3-205ENST00000564899 LRRC59Q96AG4 307 aaKnown RBP15.62■□□□□ 0.09
SF3B3-205ENST00000564899 HSPA5P11021 654 aaKnown RBP15.61■□□□□ 0.09
SF3B3-205ENST00000564899 C1orf167Q5SNV9 1468 aa15.6■□□□□ 0.09
SF3B3-205ENST00000564899 NGLY1Q96IV0 654 aa15.59■□□□□ 0.09
SF3B3-205ENST00000564899 ORAI2Q96SN7 254 aa15.59■□□□□ 0.09
SF3B3-205ENST00000564899 ADGRB1O14514 1584 aa15.58■□□□□ 0.09
SF3B3-205ENST00000564899 HIRIP3Q9BW71 556 aaPredicted RBP15.58■□□□□ 0.08
SF3B3-205ENST00000564899 ATAD2Q6PL18 1390 aa15.57■□□□□ 0.08
SF3B3-205ENST00000564899 TMEM132EQ6IEE7 984 aa15.56■□□□□ 0.08
SF3B3-205ENST00000564899 USP21Q9UK80 565 aa15.56■□□□□ 0.08
SF3B3-205ENST00000564899 ATRNO75882 1429 aa15.56■□□□□ 0.08
SF3B3-205ENST00000564899 EIF3AQ14152 1382 aaKnown RBP15.55■□□□□ 0.08
SF3B3-205ENST00000564899 ROBO2Q9HCK4 1378 aa15.55■□□□□ 0.08
SF3B3-205ENST00000564899 SOS2Q07890 1332 aaPredicted RBP15.55■□□□□ 0.08
SF3B3-205ENST00000564899 ST20-MTHFSA0A0A6YYL1 179 aa15.53■□□□□ 0.08
SF3B3-205ENST00000564899 COL22A1Q8NFW1 1626 aaPredicted RBP15.53■□□□□ 0.08
SF3B3-205ENST00000564899 FNBP4Q8N3X1 1017 aaPredicted RBP15.52■□□□□ 0.08
SF3B3-205ENST00000564899 BCL9LQ86UU0 1499 aa15.52■□□□□ 0.07
SF3B3-205ENST00000564899 YTHDC2Q9H6S0 1430 aaKnown RBP15.51■□□□□ 0.07
SF3B3-205ENST00000564899 TRPC5Q9UL62 973 aaPredicted RBP15.51■□□□□ 0.07
SF3B3-205ENST00000564899 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
SF3B3-205ENST00000564899 STK26Q9P289 416 aa15.5■□□□□ 0.07
SF3B3-205ENST00000564899 PTCH1Q13635 1447 aa15.5■□□□□ 0.07
SF3B3-205ENST00000564899 LRPPRCP42704 1394 aaKnown RBP15.49■□□□□ 0.07
SF3B3-205ENST00000564899 XPCQ01831 940 aaPredicted RBP15.49■□□□□ 0.07
SF3B3-205ENST00000564899 ZRANB1Q9UGI0 708 aa15.49■□□□□ 0.07
SF3B3-205ENST00000564899 PXDNQ92626 1479 aa15.48■□□□□ 0.07
SF3B3-205ENST00000564899 GLI3P10071 1580 aa15.47■□□□□ 0.07
SF3B3-205ENST00000564899 MARF1Q9Y4F3 1742 aaKnown RBP15.47■□□□□ 0.07
SF3B3-205ENST00000564899 CENPJQ9HC77 1338 aaPredicted RBP15.46■□□□□ 0.07
SF3B3-205ENST00000564899 TESK2Q96S53 571 aa15.46■□□□□ 0.07
SF3B3-205ENST00000564899 ABCC11Q96J66 1382 aa15.46■□□□□ 0.07
SF3B3-205ENST00000564899 DLC1Q96QB1 1528 aa15.45■□□□□ 0.06
SF3B3-205ENST00000564899 ARHGEF28Q8N1W1 1705 aaKnown RBP15.44■□□□□ 0.06
SF3B3-205ENST00000564899 DEFB132Q7Z7B7 95 aa15.44■□□□□ 0.06
SF3B3-205ENST00000564899 BRWD3Q6RI45 1802 aa15.44■□□□□ 0.06
SF3B3-205ENST00000564899 CCDC7Q96M83 1385 aa15.44■□□□□ 0.06
SF3B3-205ENST00000564899 WASHC2AQ641Q2 1341 aa15.43■□□□□ 0.06
SF3B3-205ENST00000564899 TECPR2O15040 1411 aa15.43■□□□□ 0.06
SF3B3-205ENST00000564899 C11orf95C9JLR9 678 aaPredicted RBP15.43■□□□□ 0.06
SF3B3-205ENST00000564899 PRAM1Q96QH2 718 aa15.43■□□□□ 0.06
SF3B3-205ENST00000564899 SBNO2Q9Y2G9 1366 aa15.43■□□□□ 0.06
SF3B3-205ENST00000564899 KIF7Q2M1P5 1343 aa15.43■□□□□ 0.06
SF3B3-205ENST00000564899 TMF1P82094 1093 aa15.42■□□□□ 0.06
SF3B3-205ENST00000564899 GJD4Q96KN9 370 aaPredicted RBP15.42■□□□□ 0.06
SF3B3-205ENST00000564899 POGKQ9P215 609 aa15.42■□□□□ 0.06
SF3B3-205ENST00000564899 KNDC1Q76NI1 1749 aa15.42■□□□□ 0.06
SF3B3-205ENST00000564899 CDC42BPGQ6DT37 1551 aa15.41■□□□□ 0.06
SF3B3-205ENST00000564899 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.41■□□□□ 0.06
SF3B3-205ENST00000564899 NUTM2FA1L443 756 aa15.41■□□□□ 0.06
SF3B3-205ENST00000564899 FOXO3O43524 673 aa15.41■□□□□ 0.06
SF3B3-205ENST00000564899 SLC24A1O60721 1099 aa15.41■□□□□ 0.06
SF3B3-205ENST00000564899 ESCO1Q5FWF5 840 aa15.41■□□□□ 0.06
SF3B3-205ENST00000564899 SAFB2Q14151 953 aaKnown RBP eCLIP15.4■□□□□ 0.06
SF3B3-205ENST00000564899 SIRT1Q96EB6 747 aa15.4■□□□□ 0.06
SF3B3-205ENST00000564899 POLR3GLQ9BT43 218 aa15.4■□□□□ 0.06
SF3B3-205ENST00000564899 QRICH2Q9H0J4 1663 aa15.4■□□□□ 0.06
SF3B3-205ENST00000564899 SLIT2O94813 1529 aa15.39■□□□□ 0.05
SF3B3-205ENST00000564899 PLEKHH1Q9ULM0 1364 aa15.38■□□□□ 0.05
SF3B3-205ENST00000564899 BLMP54132 1417 aaPredicted RBP15.38■□□□□ 0.05
SF3B3-205ENST00000564899 CDCA8Q53HL2 280 aa15.38■□□□□ 0.05
SF3B3-205ENST00000564899 WAPLQ7Z5K2 1190 aa15.38■□□□□ 0.05
SF3B3-205ENST00000564899 NPHP3Q7Z494 1330 aa15.38■□□□□ 0.05
SF3B3-205ENST00000564899 DDX10Q13206 875 aaKnown RBP15.37■□□□□ 0.05
SF3B3-205ENST00000564899 CCDC125Q86Z20 511 aa15.36■□□□□ 0.05
SF3B3-205ENST00000564899 MINK1Q8N4C8 1332 aaPredicted RBP15.36■□□□□ 0.05
SF3B3-205ENST00000564899 USP32Q8NFA0 1604 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms