RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DLC1Q96QB1 1528 aa19.35■□□□□ 0.69
CLK3-213ENST00000563842 ADGRB1O14514 1584 aa19.34■□□□□ 0.69
CLK3-213ENST00000563842 C1orf167Q5SNV9 1468 aa19.33■□□□□ 0.68
CLK3-213ENST00000563842 POGKQ9P215 609 aa19.32■□□□□ 0.68
CLK3-213ENST00000563842 COL16A1Q07092 1604 aaPredicted RBP19.32■□□□□ 0.68
CLK3-213ENST00000563842 NHSL1Q5SYE7 1610 aa19.32■□□□□ 0.68
CLK3-213ENST00000563842 NEUROD1Q13562 356 aa19.31■□□□□ 0.68
CLK3-213ENST00000563842 SIN3AQ96ST3 1273 aa19.31■□□□□ 0.68
CLK3-213ENST00000563842 JCADQ9P266 1359 aa19.3■□□□□ 0.68
CLK3-213ENST00000563842 PLEKHH1Q9ULM0 1364 aa19.3■□□□□ 0.68
CLK3-213ENST00000563842 PRAM1Q96QH2 718 aa19.29■□□□□ 0.68
CLK3-213ENST00000563842 TRAK1Q9UPV9 953 aa19.29■□□□□ 0.68
CLK3-213ENST00000563842 L3MBTL2Q969R5 705 aa19.28■□□□□ 0.68
CLK3-213ENST00000563842 FMN2Q9NZ56 1722 aa19.28■□□□□ 0.68
CLK3-213ENST00000563842 SHPRHQ149N8 1683 aa19.26■□□□□ 0.67
CLK3-213ENST00000563842 ARHGEF28Q8N1W1 1705 aaKnown RBP19.25■□□□□ 0.67
CLK3-213ENST00000563842 SAFB2Q14151 953 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLK3-213ENST00000563842 LRRC59Q96AG4 307 aaKnown RBP19.25■□□□□ 0.67
CLK3-213ENST00000563842 ORAI2Q96SN7 254 aa19.25■□□□□ 0.67
CLK3-213ENST00000563842 ESCO1Q5FWF5 840 aa19.24■□□□□ 0.67
CLK3-213ENST00000563842 RGPD8O14715 1765 aaPredicted RBP19.24■□□□□ 0.67
CLK3-213ENST00000563842 ADGRB2O60241 1585 aa19.23■□□□□ 0.67
CLK3-213ENST00000563842 SPATA31A6Q5VVP1 1343 aa19.23■□□□□ 0.67
CLK3-213ENST00000563842 KIF1AQ12756 1690 aa19.22■□□□□ 0.67
CLK3-213ENST00000563842 NPHP3Q7Z494 1330 aa19.22■□□□□ 0.67
CLK3-213ENST00000563842 NUTM2FA1L443 756 aa19.21■□□□□ 0.67
CLK3-213ENST00000563842 EIF3AQ14152 1382 aaKnown RBP19.2■□□□□ 0.66
CLK3-213ENST00000563842 TONSLQ96HA7 1378 aa19.19■□□□□ 0.66
CLK3-213ENST00000563842 TRPM1Q7Z4N2 1603 aa19.19■□□□□ 0.66
CLK3-213ENST00000563842 NBPF1Q3BBV0 1214 aa19.19■□□□□ 0.66
CLK3-213ENST00000563842 SOS2Q07890 1332 aaPredicted RBP19.19■□□□□ 0.66
CLK3-213ENST00000563842 DDX17Q92841 729 aaKnown RBP19.18■□□□□ 0.66
CLK3-213ENST00000563842 PCGF6Q9BYE7 350 aa19.18■□□□□ 0.66
CLK3-213ENST00000563842 MINK1Q8N4C8 1332 aaPredicted RBP19.18■□□□□ 0.66
CLK3-213ENST00000563842 ANKARQ7Z5J8 1434 aa19.17■□□□□ 0.66
CLK3-213ENST00000563842 WASLO00401 505 aaPredicted RBP19.15■□□□□ 0.66
CLK3-213ENST00000563842 FOXO3O43524 673 aa19.15■□□□□ 0.66
CLK3-213ENST00000563842 HIRIP3Q9BW71 556 aaPredicted RBP19.15■□□□□ 0.66
CLK3-213ENST00000563842 PHF8Q9UPP1 1060 aa19.14■□□□□ 0.65
CLK3-213ENST00000563842 ITSN1Q15811 1721 aa19.14■□□□□ 0.65
CLK3-213ENST00000563842 MEX3CQ5U5Q3 659 aaKnown RBP19.13■□□□□ 0.65
CLK3-213ENST00000563842 ROCK2O75116 1388 aaKnown RBP19.13■□□□□ 0.65
CLK3-213ENST00000563842 TULP4Q9NRJ4 1543 aa19.13■□□□□ 0.65
CLK3-213ENST00000563842 USP32Q8NFA0 1604 aa19.12■□□□□ 0.65
CLK3-213ENST00000563842 PNPLA6Q8IY17 1366 aa19.12■□□□□ 0.65
CLK3-213ENST00000563842 PXDNQ92626 1479 aa19.11■□□□□ 0.65
CLK3-213ENST00000563842 CLSPNQ9HAW4 1339 aa19.11■□□□□ 0.65
CLK3-213ENST00000563842 CENPJQ9HC77 1338 aaPredicted RBP19.11■□□□□ 0.65
CLK3-213ENST00000563842 PSME1Q06323 249 aa19.11■□□□□ 0.65
CLK3-213ENST00000563842 NUTM2BA6NNL0 878 aaPredicted RBP19.1■□□□□ 0.65
CLK3-213ENST00000563842 NUTM2EB1AL46 878 aaPredicted RBP19.1■□□□□ 0.65
CLK3-213ENST00000563842 NUTM2AQ8IVF1 878 aaPredicted RBP19.1■□□□□ 0.65
CLK3-213ENST00000563842 QRICH2Q9H0J4 1663 aa19.1■□□□□ 0.65
CLK3-213ENST00000563842 KRT28Q7Z3Y7 464 aa19.09■□□□□ 0.65
CLK3-213ENST00000563842 LRP6O75581 1613 aa19.09■□□□□ 0.65
CLK3-213ENST00000563842 COL22A1Q8NFW1 1626 aaPredicted RBP19.08■□□□□ 0.65
CLK3-213ENST00000563842 NBPF8Q3BBV2 869 aa19.08■□□□□ 0.64
CLK3-213ENST00000563842 XPCQ01831 940 aaPredicted RBP19.07■□□□□ 0.64
CLK3-213ENST00000563842 CDK19Q9BWU1 502 aa19.07■□□□□ 0.64
CLK3-213ENST00000563842 GPRASP1Q5JY77 1395 aa19.06■□□□□ 0.64
CLK3-213ENST00000563842 PMFBP1Q8TBY8 1022 aa19.06■□□□□ 0.64
CLK3-213ENST00000563842 NUDT16Q96DE0 195 aaKnown RBP19.06■□□□□ 0.64
CLK3-213ENST00000563842 PRR36Q9H6K5 1346 aa19.05■□□□□ 0.64
CLK3-213ENST00000563842 RGS17Q9UGC6 210 aaPredicted RBP19.05■□□□□ 0.64
CLK3-213ENST00000563842 SPATA31A3Q5VYP0 1347 aa19.04■□□□□ 0.64
CLK3-213ENST00000563842 RALGAPBQ86X10 1494 aa19.04■□□□□ 0.64
CLK3-213ENST00000563842 ZNF772Q68DY9 489 aaPredicted RBP19.04■□□□□ 0.64
CLK3-213ENST00000563842 CARD11Q9BXL7 1154 aa19.04■□□□□ 0.64
CLK3-213ENST00000563842 TIMELESSQ9UNS1 1208 aa19.04■□□□□ 0.64
CLK3-213ENST00000563842 SBNO1A3KN83 1393 aa19.04■□□□□ 0.64
CLK3-213ENST00000563842 ATP7BP35670 1465 aa19.03■□□□□ 0.64
CLK3-213ENST00000563842 NGDNQ8NEJ9 315 aaKnown RBP19.03■□□□□ 0.64
CLK3-213ENST00000563842 CCDC61Q9Y6R9 512 aa19.03■□□□□ 0.64
CLK3-213ENST00000563842 TNS3Q68CZ2 1445 aa19.02■□□□□ 0.64
CLK3-213ENST00000563842 SRPK2P78362 688 aaKnown RBP19.02■□□□□ 0.64
CLK3-213ENST00000563842 MARF1Q9Y4F3 1742 aaKnown RBP19.02■□□□□ 0.63
CLK3-213ENST00000563842 TOPAZ1Q8N9V7 1692 aa19.01■□□□□ 0.63
CLK3-213ENST00000563842 ARHGEF10O15013 1369 aa19.01■□□□□ 0.63
CLK3-213ENST00000563842 EVC2Q86UK5 1308 aa19■□□□□ 0.63
CLK3-213ENST00000563842 ADAMTS2O95450 1211 aa18.99■□□□□ 0.63
CLK3-213ENST00000563842 C8orf37Q96NL8 207 aa18.99■□□□□ 0.63
CLK3-213ENST00000563842 TRPM3Q9HCF6 1732 aaPredicted RBP18.99■□□□□ 0.63
CLK3-213ENST00000563842 LMOD2Q6P5Q4 547 aa18.98■□□□□ 0.63
CLK3-213ENST00000563842 POTEAQ6S8J7 498 aa18.98■□□□□ 0.63
CLK3-213ENST00000563842 CCER1Q8TC90 406 aaPredicted RBP18.98■□□□□ 0.63
CLK3-213ENST00000563842 NGLY1Q96IV0 654 aa18.98■□□□□ 0.63
CLK3-213ENST00000563842 PLEKHG3A1L390 1219 aa18.97■□□□□ 0.63
CLK3-213ENST00000563842 AFF2P51816 1311 aa18.97■□□□□ 0.63
CLK3-213ENST00000563842 SBNO2Q9Y2G9 1366 aa18.96■□□□□ 0.63
CLK3-213ENST00000563842 HAP1P54257 671 aaPredicted RBP18.96■□□□□ 0.63
CLK3-213ENST00000563842 CABP2Q9NPB3 220 aa18.96■□□□□ 0.63
CLK3-213ENST00000563842 ALS2Q96Q42 1657 aa18.95■□□□□ 0.62
CLK3-213ENST00000563842 POLR3AO14802 1390 aaPredicted RBP18.95■□□□□ 0.62
CLK3-213ENST00000563842 ACEP12821 1306 aa18.95■□□□□ 0.62
CLK3-213ENST00000563842 PPIP5K1Q6PFW1 1433 aa18.94■□□□□ 0.62
CLK3-213ENST00000563842 SLC24A1O60721 1099 aa18.94■□□□□ 0.62
CLK3-213ENST00000563842 PAK3O75914 559 aaPredicted RBP18.94■□□□□ 0.62
CLK3-213ENST00000563842 ABCA3Q99758 1704 aa18.92■□□□□ 0.62
CLK3-213ENST00000563842 BRD4O60885 1362 aaPredicted RBP18.92■□□□□ 0.62
CLK3-213ENST00000563842 FNBP4Q8N3X1 1017 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms