RNA–Protein interactions for RNA: ENST00000562702.2

HDGFL3-202, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 449 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-202ENST00000562702 SNIP1Q8TAD8 396 aaKnown RBP9.04□□□□□ -0.96
HDGFL3-202ENST00000562702 LCE2AQ5TA79 106 aaPredicted RBP9.03□□□□□ -0.96
HDGFL3-202ENST00000562702 REPIN1Q9BWE0 567 aaKnown RBP9.03□□□□□ -0.96
HDGFL3-202ENST00000562702 SENP2Q9HC62 589 aa9.03□□□□□ -0.96
HDGFL3-202ENST00000562702 PRDM9Q9NQV7 894 aa9.02□□□□□ -0.97
HDGFL3-202ENST00000562702 STK17AQ9UEE5 414 aa9.02□□□□□ -0.97
HDGFL3-202ENST00000562702 TRIM32Q13049 653 aa9□□□□□ -0.97
HDGFL3-202ENST00000562702 RNF19BQ6ZMZ0 732 aa8.99□□□□□ -0.97
HDGFL3-202ENST00000562702 NLRP7Q8WX94 980 aa8.99□□□□□ -0.97
HDGFL3-202ENST00000562702 KIFC2Q96AC6 838 aa8.98□□□□□ -0.97
HDGFL3-202ENST00000562702 ATP13A2Q9NQ11 1180 aa8.98□□□□□ -0.97
HDGFL3-202ENST00000562702 WIPF1O43516 503 aa8.97□□□□□ -0.97
HDGFL3-202ENST00000562702 SMPD1P17405 629 aa8.97□□□□□ -0.97
HDGFL3-202ENST00000562702 MMP16P51512 607 aa8.97□□□□□ -0.97
HDGFL3-202ENST00000562702 NFX1Q12986 1120 aaKnown RBP8.97□□□□□ -0.97
HDGFL3-202ENST00000562702 GPIHBP1Q8IV16 184 aa8.97□□□□□ -0.97
HDGFL3-202ENST00000562702 MRGPRX2Q96LB1 330 aa8.96□□□□□ -0.98
HDGFL3-202ENST00000562702 USB1Q9BQ65 265 aaKnown RBP8.96□□□□□ -0.98
HDGFL3-202ENST00000562702 GPR37O15354 613 aa8.95□□□□□ -0.98
HDGFL3-202ENST00000562702 CCDC24Q8N4L8 307 aa8.95□□□□□ -0.98
HDGFL3-202ENST00000562702 TRIM47Q96LD4 638 aa8.95□□□□□ -0.98
HDGFL3-202ENST00000562702 KDM4AO75164 1064 aa8.94□□□□□ -0.98
HDGFL3-202ENST00000562702 USP46P62068 366 aa8.94□□□□□ -0.98
HDGFL3-202ENST00000562702 TERTO14746 1132 aaKnown RBP8.93□□□□□ -0.98
HDGFL3-202ENST00000562702 WNT7BP56706 349 aa8.93□□□□□ -0.98
HDGFL3-202ENST00000562702 PHOX2BQ99453 314 aa8.93□□□□□ -0.98
HDGFL3-202ENST00000562702 FAM181BA6NEQ2 426 aa8.92□□□□□ -0.98
HDGFL3-202ENST00000562702 J3QL48 77 aa8.92□□□□□ -0.98
HDGFL3-202ENST00000562702 DXOO77932 396 aaKnown RBP8.92□□□□□ -0.98
HDGFL3-202ENST00000562702 SLC16A10Q8TF71 515 aa8.92□□□□□ -0.98
HDGFL3-202ENST00000562702 SNRPBP14678 240 aaKnown RBP8.91□□□□□ -0.98
HDGFL3-202ENST00000562702 CD46P15529 392 aa8.91□□□□□ -0.98
HDGFL3-202ENST00000562702 RC3H1Q5TC82 1133 aaKnown RBP8.91□□□□□ -0.98
HDGFL3-202ENST00000562702 TULP1O00294 542 aaPredicted RBP8.9□□□□□ -0.98
HDGFL3-202ENST00000562702 HPS1Q92902 700 aa8.89□□□□□ -0.99
HDGFL3-202ENST00000562702 ALDH1A1P00352 501 aa8.87□□□□□ -0.99
HDGFL3-202ENST00000562702 MAP2K5Q13163 448 aa8.86□□□□□ -0.99
HDGFL3-202ENST00000562702 WASF2Q9Y6W5 498 aa8.85□□□□□ -0.99
HDGFL3-202ENST00000562702 JUNDP17535 347 aa8.84□□□□□ -0.99
HDGFL3-202ENST00000562702 MDM2Q00987 491 aaPredicted RBP8.84□□□□□ -0.99
HDGFL3-202ENST00000562702 EHBP1Q8NDI1 1231 aa8.84□□□□□ -0.99
HDGFL3-202ENST00000562702 HOXA2O43364 376 aa8.83□□□□□ -1
HDGFL3-202ENST00000562702 SKOR1P84550 965 aa8.83□□□□□ -1
HDGFL3-202ENST00000562702 NXF1Q9UBU9 619 aaKnown RBP8.83□□□□□ -1
HDGFL3-202ENST00000562702 NUTM1Q86Y26 1132 aa8.82□□□□□ -1
HDGFL3-202ENST00000562702 NPAS3Q8IXF0 933 aa8.82□□□□□ -1
HDGFL3-202ENST00000562702 KRI1Q8N9T8 703 aaKnown RBP8.82□□□□□ -1
HDGFL3-202ENST00000562702 NUDT12Q9BQG2 462 aa8.82□□□□□ -1
HDGFL3-202ENST00000562702 MINK1Q8N4C8 1332 aaPredicted RBP8.81□□□□□ -1
HDGFL3-202ENST00000562702 IRF6O14896 467 aa8.81□□□□□ -1
HDGFL3-202ENST00000562702 RETREG3Q86VR2 466 aa8.81□□□□□ -1
HDGFL3-202ENST00000562702 IRF7Q92985 503 aa8.81□□□□□ -1
HDGFL3-202ENST00000562702 CAPN5O15484 640 aaPredicted RBP8.8□□□□□ -1
HDGFL3-202ENST00000562702 CLCN1P35523 988 aa8.79□□□□□ -1
HDGFL3-202ENST00000562702 PLCB2Q00722 1185 aa8.79□□□□□ -1
HDGFL3-202ENST00000562702 HLA-CQ95604 372 aa8.78□□□□□ -1
HDGFL3-202ENST00000562702 GPCPD1Q9NPB8 672 aa8.78□□□□□ -1
HDGFL3-202ENST00000562702 MS4A1P11836 297 aa8.76□□□□□ -1.01
HDGFL3-202ENST00000562702 ZSCAN1Q8NBB4 408 aa8.76□□□□□ -1.01
HDGFL3-202ENST00000562702 PLEKHG3A1L390 1219 aa8.75□□□□□ -1.01
HDGFL3-202ENST00000562702 C6orf229H3BNL8 230 aa8.75□□□□□ -1.01
HDGFL3-202ENST00000562702 SIAH2O43255 324 aa8.75□□□□□ -1.01
HDGFL3-202ENST00000562702 CCNYL3P0C7X3 344 aa8.75□□□□□ -1.01
HDGFL3-202ENST00000562702 GUCA2AQ02747 115 aa8.75□□□□□ -1.01
HDGFL3-202ENST00000562702 FDX1P10109 184 aa8.74□□□□□ -1.01
HDGFL3-202ENST00000562702 BMP1P13497 986 aa8.74□□□□□ -1.01
HDGFL3-202ENST00000562702 LCE2CQ5TA81 110 aa8.74□□□□□ -1.01
HDGFL3-202ENST00000562702 SYMPKQ92797 1274 aaKnown RBP8.74□□□□□ -1.01
HDGFL3-202ENST00000562702 FAM217BQ9NTX9 383 aaPredicted RBP8.74□□□□□ -1.01
HDGFL3-202ENST00000562702 GMPRP36959 345 aa8.73□□□□□ -1.01
HDGFL3-202ENST00000562702 SCARF1Q14162 830 aa8.73□□□□□ -1.01
HDGFL3-202ENST00000562702 CCDC102AQ96A19 550 aa8.73□□□□□ -1.01
HDGFL3-202ENST00000562702 PTPRNQ16849 979 aa8.72□□□□□ -1.01
HDGFL3-202ENST00000562702 PTCRAQ6ISU1 281 aaPredicted RBP8.72□□□□□ -1.01
HDGFL3-202ENST00000562702 TRIM46Q7Z4K8 759 aa8.72□□□□□ -1.01
HDGFL3-202ENST00000562702 SH3BP2P78314 561 aa8.71□□□□□ -1.02
HDGFL3-202ENST00000562702 H3BM21 787 aa8.7□□□□□ -1.02
HDGFL3-202ENST00000562702 VARSP26640 1264 aaKnown RBP8.7□□□□□ -1.02
HDGFL3-202ENST00000562702 UNC93B1Q9H1C4 597 aa8.7□□□□□ -1.02
HDGFL3-202ENST00000562702 HAP1P54257 671 aaPredicted RBP8.69□□□□□ -1.02
HDGFL3-202ENST00000562702 ZFP42Q96MM3 310 aa8.69□□□□□ -1.02
HDGFL3-202ENST00000562702 EVA1BQ9NVM1 165 aa8.69□□□□□ -1.02
HDGFL3-202ENST00000562702 SPDYE5A6NIY4 337 aa8.68□□□□□ -1.02
HDGFL3-202ENST00000562702 LINC01559Q495D7 138 aa8.68□□□□□ -1.02
HDGFL3-202ENST00000562702 VEGFBP49765 207 aa8.67□□□□□ -1.02
HDGFL3-202ENST00000562702 KCNH2Q12809 1159 aa8.67□□□□□ -1.02
HDGFL3-202ENST00000562702 MPNDQ8N594 471 aa8.67□□□□□ -1.02
HDGFL3-202ENST00000562702 NNTQ13423 1086 aa8.66□□□□□ -1.02
HDGFL3-202ENST00000562702 ZNF511Q8NB15 262 aa8.66□□□□□ -1.02
HDGFL3-202ENST00000562702 BAP1Q92560 729 aa8.66□□□□□ -1.02
HDGFL3-202ENST00000562702 ADH1CP00326 375 aa8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 DESI1Q6ICB0 168 aa8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 MRPL14Q6P1L8 145 aaKnown RBP8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 FAM174AQ8TBP5 190 aa8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 PCDHGC3Q9UN70 934 aa8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 TLL2Q9Y6L7 1015 aa8.65□□□□□ -1.02
HDGFL3-202ENST00000562702 SSTR3P32745 418 aaPredicted RBP8.64□□□□□ -1.03
HDGFL3-202ENST00000562702 MTMR2Q13614 643 aa8.64□□□□□ -1.03
HDGFL3-202ENST00000562702 PRR7Q8TB68 274 aa8.64□□□□□ -1.03
HDGFL3-202ENST00000562702 WDR4P57081 412 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms