RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 FOSBP53539 338 aa16.57■□□□□ 0.24
CSPG4P12-202ENST00000559989 FEZ1Q99689 392 aa16.57■□□□□ 0.24
CSPG4P12-202ENST00000559989 HSP90AB4PQ58FF6 505 aa16.56■□□□□ 0.24
CSPG4P12-202ENST00000559989 RALYLQ86SE5 291 aaKnown RBP16.56■□□□□ 0.24
CSPG4P12-202ENST00000559989 KIF3BO15066 747 aa16.56■□□□□ 0.24
CSPG4P12-202ENST00000559989 DHX37Q8IY37 1157 aaKnown RBP16.56■□□□□ 0.24
CSPG4P12-202ENST00000559989 NINLQ9Y2I6 1382 aa16.55■□□□□ 0.24
CSPG4P12-202ENST00000559989 SLC4A3P48751 1232 aa16.55■□□□□ 0.24
CSPG4P12-202ENST00000559989 MAP2K1Q02750 393 aaPredicted RBP16.55■□□□□ 0.24
CSPG4P12-202ENST00000559989 TSPY26PQ9H489 355 aa16.55■□□□□ 0.24
CSPG4P12-202ENST00000559989 DDX11Q96FC9 970 aa16.54■□□□□ 0.24
CSPG4P12-202ENST00000559989 KINO60870 393 aaKnown RBP16.54■□□□□ 0.24
CSPG4P12-202ENST00000559989 PSMA5P28066 241 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 ZKSCAN2Q63HK3 967 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 MLECQ14165 292 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 ERC2O15083 957 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 DACH1Q9UI36 760 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 NEBLO76041 1014 aa16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 BRPF1P55201 1214 aaPredicted RBP16.53■□□□□ 0.24
CSPG4P12-202ENST00000559989 DDX23Q9BUQ8 820 aaKnown RBP16.52■□□□□ 0.24
CSPG4P12-202ENST00000559989 FHAD1B1AJZ9 1412 aa16.52■□□□□ 0.24
CSPG4P12-202ENST00000559989 PPFIBP1Q86W92 1011 aa16.52■□□□□ 0.24
CSPG4P12-202ENST00000559989 STIM1Q13586 685 aa16.52■□□□□ 0.23
CSPG4P12-202ENST00000559989 PDCL3Q9H2J4 239 aa16.52■□□□□ 0.23
CSPG4P12-202ENST00000559989 MSH5O43196 834 aa16.52■□□□□ 0.23
CSPG4P12-202ENST00000559989 SAMD1Q6SPF0 538 aaPredicted RBP16.51■□□□□ 0.23
CSPG4P12-202ENST00000559989 G3BP1Q13283 466 aaKnown RBP eCLIP16.51■□□□□ 0.23
CSPG4P12-202ENST00000559989 NGDNQ8NEJ9 315 aaKnown RBP16.51■□□□□ 0.23
CSPG4P12-202ENST00000559989 DDX58O95786 925 aaKnown RBP16.51■□□□□ 0.23
CSPG4P12-202ENST00000559989 KRT18P05783 430 aaKnown RBP16.51■□□□□ 0.23
CSPG4P12-202ENST00000559989 FAM193AP78312 1265 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 JAKMIP3Q5VZ66 844 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 CFAP45Q9UL16 551 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 SHTN1A0MZ66 631 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 TICAM2Q86XR7 235 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 TTC5Q8N0Z6 440 aa16.5■□□□□ 0.23
CSPG4P12-202ENST00000559989 IKQ13123 557 aaPredicted RBP16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 SART3Q15020 963 aaKnown RBP16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 GRIPAP1Q4V328 841 aa16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 ZNF396Q96N95 335 aaPredicted RBP16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 ANKRD18BA2A2Z9 1011 aa16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 DDX19BQ9UMR2 479 aa16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 TRIM21P19474 475 aaKnown RBP16.49■□□□□ 0.23
CSPG4P12-202ENST00000559989 KIF15Q9NS87 1388 aa16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 EVA1CP58658 441 aa16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 LTV1Q96GA3 475 aaPredicted RBP16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 SETD5Q9C0A6 1442 aa16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 E9PSI1 815 aa16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 SERPINC1P01008 464 aa16.48■□□□□ 0.23
CSPG4P12-202ENST00000559989 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 MBD3O95983 291 aa16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 CBFA2T2O43439 604 aa16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 NLRP13Q86W25 1043 aa16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 FANCIQ9NVI1 1328 aa16.47■□□□□ 0.23
CSPG4P12-202ENST00000559989 SLC3A2P08195 630 aaKnown RBP16.46■□□□□ 0.23
CSPG4P12-202ENST00000559989 ARHGAP35Q9NRY4 1499 aa16.46■□□□□ 0.23
CSPG4P12-202ENST00000559989 RSPH4AQ5TD94 716 aa16.46■□□□□ 0.22
CSPG4P12-202ENST00000559989 FAM107BQ9H098 131 aa16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 DNAI2Q9GZS0 605 aa16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 CCDC102AQ96A19 550 aa16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 LRRFIP2Q9Y608 721 aaKnown RBP16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 MICALCLQ6ZW33 695 aa16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 CCDC27Q2M243 656 aa16.45■□□□□ 0.22
CSPG4P12-202ENST00000559989 EID1Q9Y6B2 187 aa16.44■□□□□ 0.22
CSPG4P12-202ENST00000559989 TEFQ10587 303 aa16.44■□□□□ 0.22
CSPG4P12-202ENST00000559989 SPC24Q8NBT2 197 aa16.44■□□□□ 0.22
CSPG4P12-202ENST00000559989 ERICH4A6NGS2 130 aa16.44■□□□□ 0.22
CSPG4P12-202ENST00000559989 PDCP20941 246 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 CCDC148Q8NFR7 591 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 FYB1O15117 783 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 MCM3P25205 808 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 ANAPC15P60006 121 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 NGEFQ8N5V2 710 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 CCDC175P0C221 793 aa16.43■□□□□ 0.22
CSPG4P12-202ENST00000559989 MAP9Q49MG5 647 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 TANGO6Q9C0B7 1094 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 CRBNQ96SW2 442 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 JMYQ8N9B5 988 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 CNTROBQ8N137 903 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 GBP3Q9H0R5 595 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 UQCRHLA0A096LP55 91 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 UQCRHP07919 91 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 RNF214Q8ND24 703 aa16.42■□□□□ 0.22
CSPG4P12-202ENST00000559989 TMCO3Q6UWJ1 677 aa16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 WASHC4Q2M389 1173 aa16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 PDCL2Q8N4E4 241 aa16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 C22orf23Q9BZE7 217 aa16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 GCOM1H8Y6P7 765 aaPredicted RBP16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 MYZAPP0CAP1 466 aa16.41■□□□□ 0.22
CSPG4P12-202ENST00000559989 CETN2P41208 172 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 CCDC192P0DO97 292 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 DAAM2Q86T65 1068 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 RRP9O43818 475 aaKnown RBP16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 ZWINTO95229 277 aa16.4■□□□□ 0.22
CSPG4P12-202ENST00000559989 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms