RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 JCADQ9P266 1359 aa6.27□□□□□ -1.41
SNX1-205ENST00000559339 XIRP1Q702N8 1843 aaKnown RBP6.27□□□□□ -1.41
SNX1-205ENST00000559339 ROBO1Q9Y6N7 1651 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 SPATA31A6Q5VVP1 1343 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 MST1RQ04912 1400 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.26□□□□□ -1.41
SNX1-205ENST00000559339 NUTM2FA1L443 756 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 MEX3CQ5U5Q3 659 aaKnown RBP6.26□□□□□ -1.41
SNX1-205ENST00000559339 L3MBTL2Q969R5 705 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 ORAI2Q96SN7 254 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 SIN3AQ96ST3 1273 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 C1orf167Q5SNV9 1468 aa6.26□□□□□ -1.41
SNX1-205ENST00000559339 NPHP3Q7Z494 1330 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 LAMC1P11047 1609 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 FOXO3O43524 673 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 PCGF6Q9BYE7 350 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 EIF3AQ14152 1382 aaKnown RBP6.25□□□□□ -1.41
SNX1-205ENST00000559339 TONSLQ96HA7 1378 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 PLEKHH1Q9ULM0 1364 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 IFT172Q9UG01 1749 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 ASXL1Q8IXJ9 1541 aa6.25□□□□□ -1.41
SNX1-205ENST00000559339 PSME1Q06323 249 aa6.24□□□□□ -1.41
SNX1-205ENST00000559339 HIRIP3Q9BW71 556 aaPredicted RBP6.24□□□□□ -1.41
SNX1-205ENST00000559339 SETD1AO15047 1707 aaKnown RBP6.24□□□□□ -1.41
SNX1-205ENST00000559339 MINK1Q8N4C8 1332 aaPredicted RBP6.24□□□□□ -1.41
SNX1-205ENST00000559339 CDC42BPGQ6DT37 1551 aa6.23□□□□□ -1.41
SNX1-205ENST00000559339 ROCK2O75116 1388 aaKnown RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 NUTM2BA6NNL0 878 aaPredicted RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 NUTM2EB1AL46 878 aaPredicted RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 WASLO00401 505 aaPredicted RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 NBPF1Q3BBV0 1214 aa6.23□□□□□ -1.41
SNX1-205ENST00000559339 NUTM2AQ8IVF1 878 aaPredicted RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 DDX17Q92841 729 aaKnown RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 DLC1Q96QB1 1528 aa6.23□□□□□ -1.41
SNX1-205ENST00000559339 SOS2Q07890 1332 aaPredicted RBP6.23□□□□□ -1.41
SNX1-205ENST00000559339 ADGRB1O14514 1584 aa6.23□□□□□ -1.41
SNX1-205ENST00000559339 PHLPP1O60346 1717 aa6.22□□□□□ -1.41
SNX1-205ENST00000559339 AHDC1Q5TGY3 1603 aaPredicted RBP6.22□□□□□ -1.41
SNX1-205ENST00000559339 HOXD11P31277 338 aaPredicted RBP6.22□□□□□ -1.41
SNX1-205ENST00000559339 ZNF772Q68DY9 489 aaPredicted RBP6.22□□□□□ -1.41
SNX1-205ENST00000559339 PHF8Q9UPP1 1060 aa6.22□□□□□ -1.41
SNX1-205ENST00000559339 MED1Q15648 1581 aaPredicted RBP6.22□□□□□ -1.41
SNX1-205ENST00000559339 CENPJQ9HC77 1338 aaPredicted RBP6.22□□□□□ -1.41
SNX1-205ENST00000559339 NALCNQ8IZF0 1738 aa6.22□□□□□ -1.41
SNX1-205ENST00000559339 GPRASP1Q5JY77 1395 aa6.21□□□□□ -1.41
SNX1-205ENST00000559339 HAP1P54257 671 aaPredicted RBP6.21□□□□□ -1.42
SNX1-205ENST00000559339 SRPK2P78362 688 aaKnown RBP6.21□□□□□ -1.42
SNX1-205ENST00000559339 XPCQ01831 940 aaPredicted RBP6.21□□□□□ -1.42
SNX1-205ENST00000559339 KRT28Q7Z3Y7 464 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 NGDNQ8NEJ9 315 aaKnown RBP6.21□□□□□ -1.42
SNX1-205ENST00000559339 PMFBP1Q8TBY8 1022 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 CDK19Q9BWU1 502 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 ANKARQ7Z5J8 1434 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 KNDC1Q76NI1 1749 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 CLSPNQ9HAW4 1339 aa6.21□□□□□ -1.42
SNX1-205ENST00000559339 LMOD2Q6P5Q4 547 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 ILDR2Q71H61 639 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 NGLY1Q96IV0 654 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 C8orf37Q96NL8 207 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 CARD11Q9BXL7 1154 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 TIMELESSQ9UNS1 1208 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 CCDC61Q9Y6R9 512 aa6.2□□□□□ -1.42
SNX1-205ENST00000559339 COL16A1Q07092 1604 aaPredicted RBP6.2□□□□□ -1.42
SNX1-205ENST00000559339 PNPLA6Q8IY17 1366 aa6.19□□□□□ -1.42
SNX1-205ENST00000559339 SLC24A1O60721 1099 aa6.19□□□□□ -1.42
SNX1-205ENST00000559339 PAK3O75914 559 aaPredicted RBP6.19□□□□□ -1.42
SNX1-205ENST00000559339 ADAMTS2O95450 1211 aa6.19□□□□□ -1.42
SNX1-205ENST00000559339 CCER1Q8TC90 406 aaPredicted RBP6.19□□□□□ -1.42
SNX1-205ENST00000559339 NUDT16Q96DE0 195 aaKnown RBP6.19□□□□□ -1.42
SNX1-205ENST00000559339 SPATA31A3Q5VYP0 1347 aa6.19□□□□□ -1.42
SNX1-205ENST00000559339 EVC2Q86UK5 1308 aa6.19□□□□□ -1.42
SNX1-205ENST00000559339 ARHGEF10O15013 1369 aa6.18□□□□□ -1.42
SNX1-205ENST00000559339 SOCS7O14512 581 aa6.18□□□□□ -1.42
SNX1-205ENST00000559339 RGS17Q9UGC6 210 aaPredicted RBP6.18□□□□□ -1.42
SNX1-205ENST00000559339 KIAA1210Q9ULL0 1709 aa6.18□□□□□ -1.42
SNX1-205ENST00000559339 SBNO1A3KN83 1393 aa6.18□□□□□ -1.42
SNX1-205ENST00000559339 PXDNQ92626 1479 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 TULP4Q9NRJ4 1543 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 RXRBP28702 533 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 NBPF8Q3BBV2 869 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 CABP2Q9NPB3 220 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 ADGRB2O60241 1585 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 AFF2P51816 1311 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 PRR36Q9H6K5 1346 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 NHSL1Q5SYE7 1610 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 KIF1AQ12756 1690 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 SHPRHQ149N8 1683 aa6.17□□□□□ -1.42
SNX1-205ENST00000559339 TNS3Q68CZ2 1445 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 PLEKHG3A1L390 1219 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 DCAF8L1A6NGE4 600 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 PLEKHG5O94827 1062 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 POTEAQ6S8J7 498 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 QTRT2Q9H974 415 aaKnown RBP6.16□□□□□ -1.42
SNX1-205ENST00000559339 CABP1Q9NZU7 370 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 USP21Q9UK80 565 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 LRP6O75581 1613 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 ACEP12821 1306 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 FMN2Q9NZ56 1722 aa6.16□□□□□ -1.42
SNX1-205ENST00000559339 FNBP4Q8N3X1 1017 aaPredicted RBP6.15□□□□□ -1.42
SNX1-205ENST00000559339 ABTB2Q8N961 1025 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms