RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 NBPF1Q3BBV0 1214 aa17.72■□□□□ 0.43
SMAD3-205ENST00000558428 PRAM1Q96QH2 718 aa17.72■□□□□ 0.43
SMAD3-205ENST00000558428 POGKQ9P215 609 aa17.72■□□□□ 0.43
SMAD3-205ENST00000558428 HSPA1LP34931 641 aa17.71■□□□□ 0.43
SMAD3-205ENST00000558428 SAFB2Q14151 953 aaKnown RBP eCLIP17.71■□□□□ 0.43
SMAD3-205ENST00000558428 TRPM1Q7Z4N2 1603 aa17.71■□□□□ 0.43
SMAD3-205ENST00000558428 MST1RQ04912 1400 aa17.71■□□□□ 0.43
SMAD3-205ENST00000558428 ARHGEF28Q8N1W1 1705 aaKnown RBP17.7■□□□□ 0.42
SMAD3-205ENST00000558428 CDC42BPGQ6DT37 1551 aa17.7■□□□□ 0.42
SMAD3-205ENST00000558428 NBPF8Q3BBV2 869 aa17.69■□□□□ 0.42
SMAD3-205ENST00000558428 ROCK2O75116 1388 aaKnown RBP17.66■□□□□ 0.42
SMAD3-205ENST00000558428 C1orf167Q5SNV9 1468 aa17.65■□□□□ 0.42
SMAD3-205ENST00000558428 BRINP3Q76B58 766 aa17.65■□□□□ 0.42
SMAD3-205ENST00000558428 FMN2Q9NZ56 1722 aa17.64■□□□□ 0.41
SMAD3-205ENST00000558428 MINK1Q8N4C8 1332 aaPredicted RBP17.64■□□□□ 0.41
SMAD3-205ENST00000558428 PHLPP1O60346 1717 aa17.64■□□□□ 0.41
SMAD3-205ENST00000558428 NUTM2FA1L443 756 aa17.63■□□□□ 0.41
SMAD3-205ENST00000558428 HIRIP3Q9BW71 556 aaPredicted RBP17.63■□□□□ 0.41
SMAD3-205ENST00000558428 ADGRB2O60241 1585 aa17.62■□□□□ 0.41
SMAD3-205ENST00000558428 TIMELESSQ9UNS1 1208 aa17.62■□□□□ 0.41
SMAD3-205ENST00000558428 RALGAPBQ86X10 1494 aa17.62■□□□□ 0.41
SMAD3-205ENST00000558428 ORAI2Q96SN7 254 aa17.6■□□□□ 0.41
SMAD3-205ENST00000558428 GPRASP1Q5JY77 1395 aa17.6■□□□□ 0.41
SMAD3-205ENST00000558428 AHDC1Q5TGY3 1603 aaPredicted RBP17.6■□□□□ 0.41
SMAD3-205ENST00000558428 RGPD8O14715 1765 aaPredicted RBP17.6■□□□□ 0.41
SMAD3-205ENST00000558428 CENPJQ9HC77 1338 aaPredicted RBP17.59■□□□□ 0.41
SMAD3-205ENST00000558428 ESCO1Q5FWF5 840 aa17.59■□□□□ 0.41
SMAD3-205ENST00000558428 CARD11Q9BXL7 1154 aa17.59■□□□□ 0.41
SMAD3-205ENST00000558428 NHSL1Q5SYE7 1610 aa17.58■□□□□ 0.41
SMAD3-205ENST00000558428 QRICH2Q9H0J4 1663 aa17.58■□□□□ 0.4
SMAD3-205ENST00000558428 COL16A1Q07092 1604 aaPredicted RBP17.58■□□□□ 0.4
SMAD3-205ENST00000558428 EIF3AQ14152 1382 aaKnown RBP17.57■□□□□ 0.4
SMAD3-205ENST00000558428 WASLO00401 505 aaPredicted RBP17.57■□□□□ 0.4
SMAD3-205ENST00000558428 DDX17Q92841 729 aaKnown RBP17.56■□□□□ 0.4
SMAD3-205ENST00000558428 ANKARQ7Z5J8 1434 aa17.55■□□□□ 0.4
SMAD3-205ENST00000558428 USP32Q8NFA0 1604 aa17.54■□□□□ 0.4
SMAD3-205ENST00000558428 TULP4Q9NRJ4 1543 aa17.54■□□□□ 0.4
SMAD3-205ENST00000558428 KIF1AQ12756 1690 aa17.53■□□□□ 0.4
SMAD3-205ENST00000558428 CDK19Q9BWU1 502 aa17.52■□□□□ 0.4
SMAD3-205ENST00000558428 NPHP3Q7Z494 1330 aa17.51■□□□□ 0.39
SMAD3-205ENST00000558428 PRR36Q9H6K5 1346 aa17.51■□□□□ 0.39
SMAD3-205ENST00000558428 FOXO3O43524 673 aa17.51■□□□□ 0.39
SMAD3-205ENST00000558428 PHF8Q9UPP1 1060 aa17.51■□□□□ 0.39
SMAD3-205ENST00000558428 JCADQ9P266 1359 aa17.51■□□□□ 0.39
SMAD3-205ENST00000558428 ITSN1Q15811 1721 aa17.5■□□□□ 0.39
SMAD3-205ENST00000558428 LRRC59Q96AG4 307 aaKnown RBP17.49■□□□□ 0.39
SMAD3-205ENST00000558428 ATP7BP35670 1465 aa17.49■□□□□ 0.39
SMAD3-205ENST00000558428 SOS2Q07890 1332 aaPredicted RBP17.48■□□□□ 0.39
SMAD3-205ENST00000558428 SRPK2P78362 688 aaKnown RBP17.48■□□□□ 0.39
SMAD3-205ENST00000558428 XPCQ01831 940 aaPredicted RBP17.48■□□□□ 0.39
SMAD3-205ENST00000558428 PMFBP1Q8TBY8 1022 aa17.48■□□□□ 0.39
SMAD3-205ENST00000558428 NUDT16Q96DE0 195 aaKnown RBP17.48■□□□□ 0.39
SMAD3-205ENST00000558428 SHPRHQ149N8 1683 aa17.48■□□□□ 0.39
SMAD3-205ENST00000558428 EVC2Q86UK5 1308 aa17.47■□□□□ 0.39
SMAD3-205ENST00000558428 MED1Q15648 1581 aaPredicted RBP17.46■□□□□ 0.39
SMAD3-205ENST00000558428 PXDNQ92626 1479 aa17.46■□□□□ 0.39
SMAD3-205ENST00000558428 CABP2Q9NPB3 220 aa17.46■□□□□ 0.39
SMAD3-205ENST00000558428 SBNO2Q9Y2G9 1366 aa17.45■□□□□ 0.38
SMAD3-205ENST00000558428 TOPAZ1Q8N9V7 1692 aa17.45■□□□□ 0.38
SMAD3-205ENST00000558428 USP47Q96K76 1375 aa17.44■□□□□ 0.38
SMAD3-205ENST00000558428 KRT28Q7Z3Y7 464 aa17.44■□□□□ 0.38
SMAD3-205ENST00000558428 CCDC61Q9Y6R9 512 aa17.44■□□□□ 0.38
SMAD3-205ENST00000558428 ST20-MTHFSA0A0A6YYL1 179 aa17.43■□□□□ 0.38
SMAD3-205ENST00000558428 PSME1Q06323 249 aa17.43■□□□□ 0.38
SMAD3-205ENST00000558428 NGDNQ8NEJ9 315 aaKnown RBP17.43■□□□□ 0.38
SMAD3-205ENST00000558428 SPATA31A6Q5VVP1 1343 aa17.43■□□□□ 0.38
SMAD3-205ENST00000558428 PNPLA6Q8IY17 1366 aa17.42■□□□□ 0.38
SMAD3-205ENST00000558428 DISP3Q9P2K9 1392 aa17.4■□□□□ 0.38
SMAD3-205ENST00000558428 PPIP5K1Q6PFW1 1433 aa17.4■□□□□ 0.38
SMAD3-205ENST00000558428 PLEKHG3A1L390 1219 aa17.39■□□□□ 0.37
SMAD3-205ENST00000558428 NUTM2BA6NNL0 878 aaPredicted RBP17.39■□□□□ 0.37
SMAD3-205ENST00000558428 NUTM2EB1AL46 878 aaPredicted RBP17.39■□□□□ 0.37
SMAD3-205ENST00000558428 NUTM2AQ8IVF1 878 aaPredicted RBP17.39■□□□□ 0.37
SMAD3-205ENST00000558428 SPATA31A3Q5VYP0 1347 aa17.39■□□□□ 0.37
SMAD3-205ENST00000558428 TESK2Q96S53 571 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 LRP6O75581 1613 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 ACEP12821 1306 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 SBNO1A3KN83 1393 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 ATAD2Q6PL18 1390 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 TRPM3Q9HCF6 1732 aaPredicted RBP17.38■□□□□ 0.37
SMAD3-205ENST00000558428 TNS3Q68CZ2 1445 aa17.38■□□□□ 0.37
SMAD3-205ENST00000558428 COL22A1Q8NFW1 1626 aaPredicted RBP17.37■□□□□ 0.37
SMAD3-205ENST00000558428 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
SMAD3-205ENST00000558428 CABP1Q9NZU7 370 aa17.37■□□□□ 0.37
SMAD3-205ENST00000558428 POLR3AO14802 1390 aaPredicted RBP17.37■□□□□ 0.37
SMAD3-205ENST00000558428 SLC24A1O60721 1099 aa17.36■□□□□ 0.37
SMAD3-205ENST00000558428 MEX3CQ5U5Q3 659 aaKnown RBP17.36■□□□□ 0.37
SMAD3-205ENST00000558428 LMOD2Q6P5Q4 547 aa17.36■□□□□ 0.37
SMAD3-205ENST00000558428 ARHGEF10O15013 1369 aa17.34■□□□□ 0.37
SMAD3-205ENST00000558428 PAK3O75914 559 aaPredicted RBP17.34■□□□□ 0.37
SMAD3-205ENST00000558428 ALS2Q96Q42 1657 aa17.33■□□□□ 0.37
SMAD3-205ENST00000558428 TMF1P82094 1093 aa17.33■□□□□ 0.36
SMAD3-205ENST00000558428 EIF4G2P78344 907 aaKnown RBP eCLIP17.32■□□□□ 0.36
SMAD3-205ENST00000558428 PLEKHG5O94827 1062 aa17.31■□□□□ 0.36
SMAD3-205ENST00000558428 ADAMTS2O95450 1211 aa17.31■□□□□ 0.36
SMAD3-205ENST00000558428 TMC1Q8TDI8 760 aa17.31■□□□□ 0.36
SMAD3-205ENST00000558428 PUS7Q96PZ0 661 aaKnown RBP17.31■□□□□ 0.36
SMAD3-205ENST00000558428 AKAP12Q02952 1782 aa17.3■□□□□ 0.36
SMAD3-205ENST00000558428 HSPA5P11021 654 aaKnown RBP17.29■□□□□ 0.36
SMAD3-205ENST00000558428 HAP1P54257 671 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms