RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 BRICD5Q6PL45 260 aa10.82□□□□□ -0.68
VPS29-210ENST00000552130 TREML4Q6UXN2 200 aa10.82□□□□□ -0.68
VPS29-210ENST00000552130 RDH13Q8NBN7 331 aa10.82□□□□□ -0.68
VPS29-210ENST00000552130 CD2BP2O95400 341 aaKnown RBP10.81□□□□□ -0.68
VPS29-210ENST00000552130 FMNL1O95466 1100 aaPredicted RBP10.81□□□□□ -0.68
VPS29-210ENST00000552130 DACH1Q9UI36 760 aa10.81□□□□□ -0.68
VPS29-210ENST00000552130 DDX11L8A8MPP1 907 aa10.8□□□□□ -0.68
VPS29-210ENST00000552130 SMCPP49901 116 aaPredicted RBP10.8□□□□□ -0.68
VPS29-210ENST00000552130 MSS51Q4VC12 460 aa10.79□□□□□ -0.68
VPS29-210ENST00000552130 SMYD5Q6GMV2 418 aa10.79□□□□□ -0.68
VPS29-210ENST00000552130 NLRP7Q8WX94 980 aa10.79□□□□□ -0.68
VPS29-210ENST00000552130 PRDM9Q9NQV7 894 aa10.79□□□□□ -0.68
VPS29-210ENST00000552130 CTC1Q2NKJ3 1217 aa10.77□□□□□ -0.69
VPS29-210ENST00000552130 SULF1Q8IWU6 871 aa10.77□□□□□ -0.69
VPS29-210ENST00000552130 RNF19BQ6ZMZ0 732 aa10.75□□□□□ -0.69
VPS29-210ENST00000552130 CYP4X1Q8N118 509 aa10.75□□□□□ -0.69
VPS29-210ENST00000552130 TTBK1Q5TCY1 1321 aaPredicted RBP10.75□□□□□ -0.69
VPS29-210ENST00000552130 TRIM26Q12899 539 aaPredicted RBP10.74□□□□□ -0.69
VPS29-210ENST00000552130 GMPR2Q9P2T1 348 aaKnown RBP10.74□□□□□ -0.69
VPS29-210ENST00000552130 AXIN1O15169 862 aa10.73□□□□□ -0.69
VPS29-210ENST00000552130 MMP16P51512 607 aa10.72□□□□□ -0.69
VPS29-210ENST00000552130 WNT7AO00755 349 aa10.71□□□□□ -0.69
VPS29-210ENST00000552130 SMPD1P17405 629 aa10.69□□□□□ -0.7
VPS29-210ENST00000552130 ZBTB24O43167 697 aaPredicted RBP10.68□□□□□ -0.7
VPS29-210ENST00000552130 CD46P15529 392 aa10.68□□□□□ -0.7
VPS29-210ENST00000552130 UBTFP17480 764 aaKnown RBP10.68□□□□□ -0.7
VPS29-210ENST00000552130 NFX1Q12986 1120 aaKnown RBP10.68□□□□□ -0.7
VPS29-210ENST00000552130 TRIM32Q13049 653 aa10.68□□□□□ -0.7
VPS29-210ENST00000552130 GRIPAP1Q4V328 841 aa10.68□□□□□ -0.7
VPS29-210ENST00000552130 C11orf95C9JLR9 678 aaPredicted RBP10.67□□□□□ -0.7
VPS29-210ENST00000552130 SNIP1Q8TAD8 396 aaKnown RBP10.67□□□□□ -0.7
VPS29-210ENST00000552130 TTC24A2A3L6 582 aaPredicted RBP10.66□□□□□ -0.7
VPS29-210ENST00000552130 WFS1O76024 890 aa10.66□□□□□ -0.7
VPS29-210ENST00000552130 Q3C1V9 767 aa10.66□□□□□ -0.7
VPS29-210ENST00000552130 DXOO77932 396 aaKnown RBP10.65□□□□□ -0.7
VPS29-210ENST00000552130 GPIHBP1Q8IV16 184 aa10.65□□□□□ -0.7
VPS29-210ENST00000552130 MRGPRX2Q96LB1 330 aa10.64□□□□□ -0.71
VPS29-210ENST00000552130 WIPF1O43516 503 aa10.63□□□□□ -0.71
VPS29-210ENST00000552130 LCE2CQ5TA81 110 aa10.62□□□□□ -0.71
VPS29-210ENST00000552130 USB1Q9BQ65 265 aaKnown RBP10.62□□□□□ -0.71
VPS29-210ENST00000552130 ATP13A2Q9NQ11 1180 aa10.62□□□□□ -0.71
VPS29-210ENST00000552130 J3QL48 77 aa10.61□□□□□ -0.71
VPS29-210ENST00000552130 KDM4AO75164 1064 aa10.6□□□□□ -0.71
VPS29-210ENST00000552130 HRCP23327 699 aa10.59□□□□□ -0.71
VPS29-210ENST00000552130 MAP2K5Q13163 448 aa10.59□□□□□ -0.71
VPS29-210ENST00000552130 SNRPBP14678 240 aaKnown RBP10.58□□□□□ -0.72
VPS29-210ENST00000552130 SKOR1P84550 965 aa10.58□□□□□ -0.72
VPS29-210ENST00000552130 TRIM47Q96LD4 638 aa10.58□□□□□ -0.72
VPS29-210ENST00000552130 REPIN1Q9BWE0 567 aaKnown RBP10.58□□□□□ -0.72
VPS29-210ENST00000552130 USP46P62068 366 aa10.57□□□□□ -0.72
VPS29-210ENST00000552130 HPS1Q92902 700 aa10.57□□□□□ -0.72
VPS29-210ENST00000552130 HLA-CQ95604 372 aa10.57□□□□□ -0.72
VPS29-210ENST00000552130 IRF6O14896 467 aa10.56□□□□□ -0.72
VPS29-210ENST00000552130 WNT7BP56706 349 aa10.56□□□□□ -0.72
VPS29-210ENST00000552130 HOXA2O43364 376 aa10.55□□□□□ -0.72
VPS29-210ENST00000552130 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
VPS29-210ENST00000552130 SENP2Q9HC62 589 aa10.55□□□□□ -0.72
VPS29-210ENST00000552130 TERTO14746 1132 aaKnown RBP10.54□□□□□ -0.72
VPS29-210ENST00000552130 STK17AQ9UEE5 414 aa10.54□□□□□ -0.72
VPS29-210ENST00000552130 MDM2Q00987 491 aaPredicted RBP10.52□□□□□ -0.73
VPS29-210ENST00000552130 MINK1Q8N4C8 1332 aaPredicted RBP10.51□□□□□ -0.73
VPS29-210ENST00000552130 SIAH2O43255 324 aa10.5□□□□□ -0.73
VPS29-210ENST00000552130 JUNDP17535 347 aa10.5□□□□□ -0.73
VPS29-210ENST00000552130 INSM1Q01101 510 aaPredicted RBP10.5□□□□□ -0.73
VPS29-210ENST00000552130 KIFC2Q96AC6 838 aa10.5□□□□□ -0.73
VPS29-210ENST00000552130 CCDC24Q8N4L8 307 aa10.49□□□□□ -0.73
VPS29-210ENST00000552130 GUCA2AQ02747 115 aa10.48□□□□□ -0.73
VPS29-210ENST00000552130 PTCRAQ6ISU1 281 aaPredicted RBP10.47□□□□□ -0.73
VPS29-210ENST00000552130 SYMPKQ92797 1274 aaKnown RBP10.47□□□□□ -0.73
VPS29-210ENST00000552130 FAM217BQ9NTX9 383 aaPredicted RBP10.47□□□□□ -0.73
VPS29-210ENST00000552130 BRPF1P55201 1214 aaPredicted RBP10.46□□□□□ -0.73
VPS29-210ENST00000552130 RETREG3Q86VR2 466 aa10.45□□□□□ -0.74
VPS29-210ENST00000552130 CCDC102AQ96A19 550 aa10.45□□□□□ -0.74
VPS29-210ENST00000552130 GPCPD1Q9NPB8 672 aa10.45□□□□□ -0.74
VPS29-210ENST00000552130 ALDH1A1P00352 501 aa10.44□□□□□ -0.74
VPS29-210ENST00000552130 NUDT12Q9BQG2 462 aa10.44□□□□□ -0.74
VPS29-210ENST00000552130 CLCN1P35523 988 aa10.42□□□□□ -0.74
VPS29-210ENST00000552130 PCDHGC3Q9UN70 934 aa10.42□□□□□ -0.74
VPS29-210ENST00000552130 TRIM46Q7Z4K8 759 aa10.41□□□□□ -0.74
VPS29-210ENST00000552130 LORP23490 312 aaPredicted RBP10.39□□□□□ -0.75
VPS29-210ENST00000552130 SH3BP2P78314 561 aa10.39□□□□□ -0.75
VPS29-210ENST00000552130 NXF1Q9UBU9 619 aaKnown RBP10.39□□□□□ -0.75
VPS29-210ENST00000552130 NPAS3Q8IXF0 933 aa10.38□□□□□ -0.75
VPS29-210ENST00000552130 EHBP1Q8NDI1 1231 aa10.38□□□□□ -0.75
VPS29-210ENST00000552130 CCDC9Q9Y3X0 531 aaKnown RBP10.38□□□□□ -0.75
VPS29-210ENST00000552130 FDX1P10109 184 aa10.37□□□□□ -0.75
VPS29-210ENST00000552130 NUTM1Q86Y26 1132 aa10.37□□□□□ -0.75
VPS29-210ENST00000552130 CAPN5O15484 640 aaPredicted RBP10.36□□□□□ -0.75
VPS29-210ENST00000552130 CCNYL3P0C7X3 344 aa10.36□□□□□ -0.75
VPS29-210ENST00000552130 BMP1P13497 986 aa10.36□□□□□ -0.75
VPS29-210ENST00000552130 EVA1BQ9NVM1 165 aa10.36□□□□□ -0.75
VPS29-210ENST00000552130 PTPRNQ16849 979 aa10.35□□□□□ -0.75
VPS29-210ENST00000552130 MS4A1P11836 297 aa10.34□□□□□ -0.75
VPS29-210ENST00000552130 MPNDQ8N594 471 aa10.34□□□□□ -0.75
VPS29-210ENST00000552130 SLC16A10Q8TF71 515 aa10.34□□□□□ -0.75
VPS29-210ENST00000552130 UNC93B1Q9H1C4 597 aa10.33□□□□□ -0.76
VPS29-210ENST00000552130 WASF2Q9Y6W5 498 aa10.33□□□□□ -0.76
VPS29-210ENST00000552130 H3BM21 787 aa10.32□□□□□ -0.76
VPS29-210ENST00000552130 C6orf229H3BNL8 230 aa10.32□□□□□ -0.76
VPS29-210ENST00000552130 GMPRP36959 345 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms