RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 MST1RQ04912 1400 aa27.52■■■□□ 2
DDX55-211ENST00000544429 ATF3P18847 181 aa27.51■■□□□ 1.99
DDX55-211ENST00000544429 NBPF8Q3BBV2 869 aa27.51■■□□□ 1.99
DDX55-211ENST00000544429 TRAK1Q9UPV9 953 aa27.48■■□□□ 1.99
DDX55-211ENST00000544429 ADGRB2O60241 1585 aa27.48■■□□□ 1.99
DDX55-211ENST00000544429 PRAM1Q96QH2 718 aa27.47■■□□□ 1.99
DDX55-211ENST00000544429 TIMELESSQ9UNS1 1208 aa27.46■■□□□ 1.99
DDX55-211ENST00000544429 GPRASP1Q5JY77 1395 aa27.46■■□□□ 1.99
DDX55-211ENST00000544429 SCAF1Q9H7N4 1312 aaKnown RBP27.45■■□□□ 1.99
DDX55-211ENST00000544429 FMN2Q9NZ56 1722 aa27.44■■□□□ 1.98
DDX55-211ENST00000544429 CCER1Q8TC90 406 aaPredicted RBP27.44■■□□□ 1.98
DDX55-211ENST00000544429 RALGAPBQ86X10 1494 aa27.44■■□□□ 1.98
DDX55-211ENST00000544429 C1orf167Q5SNV9 1468 aa27.42■■□□□ 1.98
DDX55-211ENST00000544429 HSPA1LP34931 641 aa27.41■■□□□ 1.98
DDX55-211ENST00000544429 ROCK2O75116 1388 aaKnown RBP27.39■■□□□ 1.98
DDX55-211ENST00000544429 POGKQ9P215 609 aa27.39■■□□□ 1.98
DDX55-211ENST00000544429 AHDC1Q5TGY3 1603 aaPredicted RBP27.38■■□□□ 1.97
DDX55-211ENST00000544429 BRINP3Q76B58 766 aa27.38■■□□□ 1.97
DDX55-211ENST00000544429 NHSL1Q5SYE7 1610 aa27.37■■□□□ 1.97
DDX55-211ENST00000544429 SAFB2Q14151 953 aaKnown RBP eCLIP27.36■■□□□ 1.97
DDX55-211ENST00000544429 COL16A1Q07092 1604 aaPredicted RBP27.34■■□□□ 1.97
DDX55-211ENST00000544429 USP32Q8NFA0 1604 aa27.34■■□□□ 1.97
DDX55-211ENST00000544429 PHLPP1O60346 1717 aa27.33■■□□□ 1.97
DDX55-211ENST00000544429 QRICH2Q9H0J4 1663 aa27.33■■□□□ 1.97
DDX55-211ENST00000544429 RGPD8O14715 1765 aaPredicted RBP27.32■■□□□ 1.96
DDX55-211ENST00000544429 MINK1Q8N4C8 1332 aaPredicted RBP27.3■■□□□ 1.96
DDX55-211ENST00000544429 ORAI2Q96SN7 254 aa27.29■■□□□ 1.96
DDX55-211ENST00000544429 CENPJQ9HC77 1338 aaPredicted RBP27.29■■□□□ 1.96
DDX55-211ENST00000544429 ANKARQ7Z5J8 1434 aa27.29■■□□□ 1.96
DDX55-211ENST00000544429 TULP4Q9NRJ4 1543 aa27.27■■□□□ 1.96
DDX55-211ENST00000544429 HIRIP3Q9BW71 556 aaPredicted RBP27.27■■□□□ 1.96
DDX55-211ENST00000544429 WASLO00401 505 aaPredicted RBP27.26■■□□□ 1.95
DDX55-211ENST00000544429 KIF1AQ12756 1690 aa27.25■■□□□ 1.95
DDX55-211ENST00000544429 CARD11Q9BXL7 1154 aa27.25■■□□□ 1.95
DDX55-211ENST00000544429 EIF3AQ14152 1382 aaKnown RBP27.23■■□□□ 1.95
DDX55-211ENST00000544429 NUTM2FA1L443 756 aa27.22■■□□□ 1.95
DDX55-211ENST00000544429 SBNO2Q9Y2G9 1366 aa27.22■■□□□ 1.95
DDX55-211ENST00000544429 PRR36Q9H6K5 1346 aa27.21■■□□□ 1.95
DDX55-211ENST00000544429 ATP7BP35670 1465 aa27.21■■□□□ 1.95
DDX55-211ENST00000544429 ESCO1Q5FWF5 840 aa27.21■■□□□ 1.95
DDX55-211ENST00000544429 TOPAZ1Q8N9V7 1692 aa27.2■■□□□ 1.94
DDX55-211ENST00000544429 PXDNQ92626 1479 aa27.19■■□□□ 1.94
DDX55-211ENST00000544429 ITSN1Q15811 1721 aa27.19■■□□□ 1.94
DDX55-211ENST00000544429 SOS2Q07890 1332 aaPredicted RBP27.18■■□□□ 1.94
DDX55-211ENST00000544429 DDX17Q92841 729 aaKnown RBP27.18■■□□□ 1.94
DDX55-211ENST00000544429 SHPRHQ149N8 1683 aa27.17■■□□□ 1.94
DDX55-211ENST00000544429 CDK19Q9BWU1 502 aa27.17■■□□□ 1.94
DDX55-211ENST00000544429 NPHP3Q7Z494 1330 aa27.15■■□□□ 1.94
DDX55-211ENST00000544429 JCADQ9P266 1359 aa27.14■■□□□ 1.94
DDX55-211ENST00000544429 PHF8Q9UPP1 1060 aa27.14■■□□□ 1.94
DDX55-211ENST00000544429 FOXO3O43524 673 aa27.12■■□□□ 1.93
DDX55-211ENST00000544429 NUDT16Q96DE0 195 aaKnown RBP27.12■■□□□ 1.93
DDX55-211ENST00000544429 LRRC59Q96AG4 307 aaKnown RBP27.09■■□□□ 1.93
DDX55-211ENST00000544429 USP47Q96K76 1375 aa27.09■■□□□ 1.93
DDX55-211ENST00000544429 TESK2Q96S53 571 aa27.08■■□□□ 1.93
DDX55-211ENST00000544429 MED1Q15648 1581 aaPredicted RBP27.08■■□□□ 1.93
DDX55-211ENST00000544429 EVC2Q86UK5 1308 aa27.08■■□□□ 1.93
DDX55-211ENST00000544429 CCDC61Q9Y6R9 512 aa27.07■■□□□ 1.92
DDX55-211ENST00000544429 TRPM3Q9HCF6 1732 aaPredicted RBP27.07■■□□□ 1.92
DDX55-211ENST00000544429 COL22A1Q8NFW1 1626 aaPredicted RBP27.06■■□□□ 1.92
DDX55-211ENST00000544429 PNPLA6Q8IY17 1366 aa27.06■■□□□ 1.92
DDX55-211ENST00000544429 ST20-MTHFSA0A0A6YYL1 179 aa27.05■■□□□ 1.92
DDX55-211ENST00000544429 PMFBP1Q8TBY8 1022 aa27.05■■□□□ 1.92
DDX55-211ENST00000544429 CABP2Q9NPB3 220 aa27.05■■□□□ 1.92
DDX55-211ENST00000544429 POLR3AO14802 1390 aaPredicted RBP27.05■■□□□ 1.92
DDX55-211ENST00000544429 PLEKHG3A1L390 1219 aa27.04■■□□□ 1.92
DDX55-211ENST00000544429 SRPK2P78362 688 aaKnown RBP27.04■■□□□ 1.92
DDX55-211ENST00000544429 SPATA31A6Q5VVP1 1343 aa27.03■■□□□ 1.92
DDX55-211ENST00000544429 XPCQ01831 940 aaPredicted RBP27.02■■□□□ 1.92
DDX55-211ENST00000544429 SBNO1A3KN83 1393 aa27.01■■□□□ 1.91
DDX55-211ENST00000544429 KRT28Q7Z3Y7 464 aa27.01■■□□□ 1.91
DDX55-211ENST00000544429 PPIP5K1Q6PFW1 1433 aa27■■□□□ 1.91
DDX55-211ENST00000544429 SPATA31A3Q5VYP0 1347 aa27■■□□□ 1.91
DDX55-211ENST00000544429 LRP6O75581 1613 aa27■■□□□ 1.91
DDX55-211ENST00000544429 ALS2Q96Q42 1657 aa26.99■■□□□ 1.91
DDX55-211ENST00000544429 PUS7Q96PZ0 661 aaKnown RBP26.98■■□□□ 1.91
DDX55-211ENST00000544429 TNS3Q68CZ2 1445 aa26.98■■□□□ 1.91
DDX55-211ENST00000544429 ATAD2Q6PL18 1390 aa26.97■■□□□ 1.91
DDX55-211ENST00000544429 SLC24A1O60721 1099 aa26.97■■□□□ 1.91
DDX55-211ENST00000544429 ACEP12821 1306 aa26.96■■□□□ 1.91
DDX55-211ENST00000544429 PSME1Q06323 249 aa26.96■■□□□ 1.91
DDX55-211ENST00000544429 NGDNQ8NEJ9 315 aaKnown RBP26.95■■□□□ 1.9
DDX55-211ENST00000544429 AKAP12Q02952 1782 aa26.94■■□□□ 1.9
DDX55-211ENST00000544429 CABP1Q9NZU7 370 aa26.93■■□□□ 1.9
DDX55-211ENST00000544429 DISP3Q9P2K9 1392 aa26.92■■□□□ 1.9
DDX55-211ENST00000544429 ABCA3Q99758 1704 aa26.9■■□□□ 1.9
DDX55-211ENST00000544429 CPSF1Q10570 1443 aaKnown RBP26.9■■□□□ 1.9
DDX55-211ENST00000544429 ARHGEF10O15013 1369 aa26.89■■□□□ 1.9
DDX55-211ENST00000544429 CRYBG1Q9Y4K1 1723 aa26.89■■□□□ 1.9
DDX55-211ENST00000544429 SSH2Q76I76 1423 aa26.89■■□□□ 1.89
DDX55-211ENST00000544429 CD163L1Q9NR16 1453 aa26.88■■□□□ 1.89
DDX55-211ENST00000544429 BRD4O60885 1362 aaPredicted RBP26.88■■□□□ 1.89
DDX55-211ENST00000544429 USP6P35125 1406 aa26.88■■□□□ 1.89
DDX55-211ENST00000544429 EIF4G2P78344 907 aaKnown RBP eCLIP26.87■■□□□ 1.89
DDX55-211ENST00000544429 MON2Q7Z3U7 1717 aa26.87■■□□□ 1.89
DDX55-211ENST00000544429 TMF1P82094 1093 aa26.86■■□□□ 1.89
DDX55-211ENST00000544429 NRKQ7Z2Y5 1582 aa26.86■■□□□ 1.89
DDX55-211ENST00000544429 MARF1Q9Y4F3 1742 aaKnown RBP26.86■■□□□ 1.89
DDX55-211ENST00000544429 HSPA5P11021 654 aaKnown RBP26.84■■□□□ 1.89
DDX55-211ENST00000544429 NINLQ9Y2I6 1382 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms