RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 KIF7Q2M1P5 1343 aa17.34■□□□□ 0.37
SMAD3-204ENST00000540846 NALCNQ8IZF0 1738 aa17.34■□□□□ 0.37
SMAD3-204ENST00000540846 PRAM1Q96QH2 718 aa17.34■□□□□ 0.37
SMAD3-204ENST00000540846 DISP3Q9P2K9 1392 aa17.34■□□□□ 0.37
SMAD3-204ENST00000540846 AEBP2Q6ZN18 517 aaPredicted RBP17.33■□□□□ 0.37
SMAD3-204ENST00000540846 WAPLQ7Z5K2 1190 aa17.32■□□□□ 0.36
SMAD3-204ENST00000540846 XIRP1Q702N8 1843 aaKnown RBP17.32■□□□□ 0.36
SMAD3-204ENST00000540846 MYOM1P52179 1685 aa17.31■□□□□ 0.36
SMAD3-204ENST00000540846 CENPBP07199 599 aaPredicted RBP17.3■□□□□ 0.36
SMAD3-204ENST00000540846 ANP32CO43423 234 aa17.29■□□□□ 0.36
SMAD3-204ENST00000540846 SAFB2Q14151 953 aaKnown RBP eCLIP17.28■□□□□ 0.36
SMAD3-204ENST00000540846 POGKQ9P215 609 aa17.28■□□□□ 0.36
SMAD3-204ENST00000540846 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
SMAD3-204ENST00000540846 ZNF335Q9H4Z2 1342 aaPredicted RBP17.26■□□□□ 0.35
SMAD3-204ENST00000540846 CDC42BPGQ6DT37 1551 aa17.26■□□□□ 0.35
SMAD3-204ENST00000540846 CCER2I3L3R5 266 aa17.26■□□□□ 0.35
SMAD3-204ENST00000540846 MINK1Q8N4C8 1332 aaPredicted RBP17.25■□□□□ 0.35
SMAD3-204ENST00000540846 YTHDC1Q96MU7 727 aaKnown RBP17.25■□□□□ 0.35
SMAD3-204ENST00000540846 FMN2Q9NZ56 1722 aa17.25■□□□□ 0.35
SMAD3-204ENST00000540846 ADGRL3Q9HAR2 1447 aa17.25■□□□□ 0.35
SMAD3-204ENST00000540846 LTBP4Q8N2S1 1624 aa17.24■□□□□ 0.35
SMAD3-204ENST00000540846 USP32Q8NFA0 1604 aa17.24■□□□□ 0.35
SMAD3-204ENST00000540846 TMF1P82094 1093 aa17.24■□□□□ 0.35
SMAD3-204ENST00000540846 LRRC7Q96NW7 1537 aa17.24■□□□□ 0.35
SMAD3-204ENST00000540846 TOPAZ1Q8N9V7 1692 aa17.24■□□□□ 0.35
SMAD3-204ENST00000540846 SLC24A1O60721 1099 aa17.23■□□□□ 0.35
SMAD3-204ENST00000540846 NCOA3Q9Y6Q9 1424 aa17.21■□□□□ 0.35
SMAD3-204ENST00000540846 EVC2Q86UK5 1308 aa17.21■□□□□ 0.35
SMAD3-204ENST00000540846 ATP7BP35670 1465 aa17.21■□□□□ 0.35
SMAD3-204ENST00000540846 RGPD8O14715 1765 aaPredicted RBP17.21■□□□□ 0.35
SMAD3-204ENST00000540846 TMEM94Q12767 1356 aa17.2■□□□□ 0.34
SMAD3-204ENST00000540846 RBM33Q96EV2 1170 aaKnown RBP17.2■□□□□ 0.34
SMAD3-204ENST00000540846 PUS7Q96PZ0 661 aaKnown RBP17.19■□□□□ 0.34
SMAD3-204ENST00000540846 WASLO00401 505 aaPredicted RBP17.19■□□□□ 0.34
SMAD3-204ENST00000540846 PROSER2Q86WR7 435 aaPredicted RBP17.18■□□□□ 0.34
SMAD3-204ENST00000540846 CDK19Q9BWU1 502 aa17.18■□□□□ 0.34
SMAD3-204ENST00000540846 ITSN1Q15811 1721 aa17.17■□□□□ 0.34
SMAD3-204ENST00000540846 CDCA8Q53HL2 280 aa17.17■□□□□ 0.34
SMAD3-204ENST00000540846 CABP2Q9NPB3 220 aa17.16■□□□□ 0.34
SMAD3-204ENST00000540846 PRR36Q9H6K5 1346 aa17.16■□□□□ 0.34
SMAD3-204ENST00000540846 DCCP43146 1447 aa17.16■□□□□ 0.34
SMAD3-204ENST00000540846 ATAD2Q6PL18 1390 aa17.14■□□□□ 0.34
SMAD3-204ENST00000540846 ANKARQ7Z5J8 1434 aa17.14■□□□□ 0.33
SMAD3-204ENST00000540846 CD163L1Q9NR16 1453 aa17.14■□□□□ 0.33
SMAD3-204ENST00000540846 AKAP12Q02952 1782 aa17.13■□□□□ 0.33
SMAD3-204ENST00000540846 SRPK2P78362 688 aaKnown RBP17.13■□□□□ 0.33
SMAD3-204ENST00000540846 PRKRIP1Q9H875 184 aaPredicted RBP17.13■□□□□ 0.33
SMAD3-204ENST00000540846 NINLQ9Y2I6 1382 aa17.11■□□□□ 0.33
SMAD3-204ENST00000540846 POLR3GLQ9BT43 218 aa17.11■□□□□ 0.33
SMAD3-204ENST00000540846 MON2Q7Z3U7 1717 aa17.11■□□□□ 0.33
SMAD3-204ENST00000540846 C19orf44Q9H6X5 657 aa17.11■□□□□ 0.33
SMAD3-204ENST00000540846 MST1RQ04912 1400 aa17.1■□□□□ 0.33
SMAD3-204ENST00000540846 NUDT16Q96DE0 195 aaKnown RBP17.1■□□□□ 0.33
SMAD3-204ENST00000540846 PPIP5K1Q6PFW1 1433 aa17.09■□□□□ 0.33
SMAD3-204ENST00000540846 SLC12A5Q9H2X9 1139 aa17.09■□□□□ 0.33
SMAD3-204ENST00000540846 NRKQ7Z2Y5 1582 aa17.08■□□□□ 0.33
SMAD3-204ENST00000540846 MSH6P52701 1360 aa17.08■□□□□ 0.32
SMAD3-204ENST00000540846 CPSF1Q10570 1443 aaKnown RBP17.07■□□□□ 0.32
SMAD3-204ENST00000540846 ANKRD36BQ8N2N9 1353 aa17.07■□□□□ 0.32
SMAD3-204ENST00000540846 C1orf167Q5SNV9 1468 aa17.07■□□□□ 0.32
SMAD3-204ENST00000540846 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
SMAD3-204ENST00000540846 CCDC61Q9Y6R9 512 aa17.06■□□□□ 0.32
SMAD3-204ENST00000540846 A0A1W2PP64 1363 aa17.06■□□□□ 0.32
SMAD3-204ENST00000540846 NUTM2FA1L443 756 aa17.06■□□□□ 0.32
SMAD3-204ENST00000540846 PER1O15534 1290 aaPredicted RBP17.06■□□□□ 0.32
SMAD3-204ENST00000540846 KTN1Q86UP2 1357 aaKnown RBP17.05■□□□□ 0.32
SMAD3-204ENST00000540846 KIF1AQ12756 1690 aa17.05■□□□□ 0.32
SMAD3-204ENST00000540846 PANK3Q9H999 370 aa17.05■□□□□ 0.32
SMAD3-204ENST00000540846 CABP1Q9NZU7 370 aa17.05■□□□□ 0.32
SMAD3-204ENST00000540846 PLEKHG3A1L390 1219 aa17.04■□□□□ 0.32
SMAD3-204ENST00000540846 CARD14Q9BXL6 1004 aa17.04■□□□□ 0.32
SMAD3-204ENST00000540846 POLR3AO14802 1390 aaPredicted RBP17.04■□□□□ 0.32
SMAD3-204ENST00000540846 TMC1Q8TDI8 760 aa17.03■□□□□ 0.32
SMAD3-204ENST00000540846 CADPS2Q86UW7 1296 aa17.02■□□□□ 0.32
SMAD3-204ENST00000540846 ATF3P18847 181 aa17.01■□□□□ 0.31
SMAD3-204ENST00000540846 KIF20BQ96Q89 1820 aa17.01■□□□□ 0.31
SMAD3-204ENST00000540846 IQSEC2Q5JU85 1478 aa17■□□□□ 0.31
SMAD3-204ENST00000540846 SSH2Q76I76 1423 aa17■□□□□ 0.31
SMAD3-204ENST00000540846 NSD3Q9BZ95 1437 aa17■□□□□ 0.31
SMAD3-204ENST00000540846 ANKRD26Q9UPS8 1709 aa17■□□□□ 0.31
SMAD3-204ENST00000540846 SCAF1Q9H7N4 1312 aaKnown RBP17■□□□□ 0.31
SMAD3-204ENST00000540846 TRPM3Q9HCF6 1732 aaPredicted RBP16.99■□□□□ 0.31
SMAD3-204ENST00000540846 USP6P35125 1406 aa16.99■□□□□ 0.31
SMAD3-204ENST00000540846 ACEP12821 1306 aa16.99■□□□□ 0.31
SMAD3-204ENST00000540846 ORAI2Q96SN7 254 aa16.98■□□□□ 0.31
SMAD3-204ENST00000540846 TERF2IPQ9NYB0 399 aa16.98■□□□□ 0.31
SMAD3-204ENST00000540846 PARD3Q8TEW0 1356 aa16.98■□□□□ 0.31
SMAD3-204ENST00000540846 EDC4Q6P2E9 1401 aaKnown RBP16.98■□□□□ 0.31
SMAD3-204ENST00000540846 CCDC184Q52MB2 194 aa16.98■□□□□ 0.31
SMAD3-204ENST00000540846 NHSL1Q5SYE7 1610 aa16.97■□□□□ 0.31
SMAD3-204ENST00000540846 AMER1Q5JTC6 1135 aaPredicted RBP16.97■□□□□ 0.31
SMAD3-204ENST00000540846 PMFBP1Q8TBY8 1022 aa16.97■□□□□ 0.31
SMAD3-204ENST00000540846 PHF8Q9UPP1 1060 aa16.97■□□□□ 0.31
SMAD3-204ENST00000540846 NPC1L1Q9UHC9 1359 aa16.96■□□□□ 0.31
SMAD3-204ENST00000540846 MARF1Q9Y4F3 1742 aaKnown RBP16.96■□□□□ 0.31
SMAD3-204ENST00000540846 RALBP1Q15311 655 aa16.96■□□□□ 0.31
SMAD3-204ENST00000540846 MRS2Q9HD23 443 aa16.96■□□□□ 0.31
SMAD3-204ENST00000540846 USP54Q70EL1 1684 aa16.96■□□□□ 0.31
SMAD3-204ENST00000540846 PIK3C2AO00443 1686 aa16.95■□□□□ 0.3
SMAD3-204ENST00000540846 ESCO1Q5FWF5 840 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms