RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 ABCC3O15438 1527 aa11.27□□□□□ -0.6
DDB1-217ENST00000540166 EFCAB6Q5THR3 1501 aa11.27□□□□□ -0.61
DDB1-217ENST00000540166 INO80Q9ULG1 1556 aaPredicted RBP11.27□□□□□ -0.61
DDB1-217ENST00000540166 XPCQ01831 940 aaPredicted RBP11.26□□□□□ -0.61
DDB1-217ENST00000540166 ZNF772Q68DY9 489 aaPredicted RBP11.26□□□□□ -0.61
DDB1-217ENST00000540166 FOXO3O43524 673 aa11.25□□□□□ -0.61
DDB1-217ENST00000540166 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
DDB1-217ENST00000540166 C3P01024 1663 aa11.25□□□□□ -0.61
DDB1-217ENST00000540166 L1TD1Q5T7N2 865 aaKnown RBP11.25□□□□□ -0.61
DDB1-217ENST00000540166 EVA1CP58658 441 aa11.24□□□□□ -0.61
DDB1-217ENST00000540166 MINK1Q8N4C8 1332 aaPredicted RBP11.24□□□□□ -0.61
DDB1-217ENST00000540166 ZMYND15Q9H091 742 aa11.24□□□□□ -0.61
DDB1-217ENST00000540166 ARHGAP31Q2M1Z3 1444 aa11.23□□□□□ -0.61
DDB1-217ENST00000540166 TCOF1Q13428 1488 aaKnown RBP11.23□□□□□ -0.61
DDB1-217ENST00000540166 HFM1A2PYH4 1435 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 CPS1P31327 1500 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 LRRIQ1Q96JM4 1722 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 RXRBP28702 533 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 LRPPRCP42704 1394 aaKnown RBP11.22□□□□□ -0.61
DDB1-217ENST00000540166 CCDC7Q96M83 1385 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 MS4A1P11836 297 aa11.22□□□□□ -0.61
DDB1-217ENST00000540166 GPRASP1Q5JY77 1395 aa11.21□□□□□ -0.61
DDB1-217ENST00000540166 PLEKHG1Q9ULL1 1385 aa11.21□□□□□ -0.61
DDB1-217ENST00000540166 NPHP3Q7Z494 1330 aa11.21□□□□□ -0.61
DDB1-217ENST00000540166 DNMT1P26358 1616 aaKnown RBP11.21□□□□□ -0.61
DDB1-217ENST00000540166 SOX12O15370 315 aa11.21□□□□□ -0.62
DDB1-217ENST00000540166 ANKRD30BQ9BXX2 1392 aa11.21□□□□□ -0.62
DDB1-217ENST00000540166 SOCS7O14512 581 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 PMFBP1Q8TBY8 1022 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 NAIPQ13075 1403 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 CSB-PGBD3P0DP91 1061 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 CFAP70Q5T0N1 1121 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 WAPLQ7Z5K2 1190 aa11.2□□□□□ -0.62
DDB1-217ENST00000540166 PRAM1Q96QH2 718 aa11.19□□□□□ -0.62
DDB1-217ENST00000540166 RPRD2Q5VT52 1461 aaKnown RBP11.19□□□□□ -0.62
DDB1-217ENST00000540166 CARD11Q9BXL7 1154 aa11.19□□□□□ -0.62
DDB1-217ENST00000540166 BACH2Q9BYV9 841 aa11.19□□□□□ -0.62
DDB1-217ENST00000540166 KIF7Q2M1P5 1343 aa11.19□□□□□ -0.62
DDB1-217ENST00000540166 JCADQ9P266 1359 aa11.19□□□□□ -0.62
DDB1-217ENST00000540166 TRIM44Q96DX7 344 aaPredicted RBP11.18□□□□□ -0.62
DDB1-217ENST00000540166 BECN1Q14457 450 aa11.18□□□□□ -0.62
DDB1-217ENST00000540166 EXOC6Q8TAG9 804 aa11.18□□□□□ -0.62
DDB1-217ENST00000540166 NBPF8Q3BBV2 869 aa11.17□□□□□ -0.62
DDB1-217ENST00000540166 QTRT2Q9H974 415 aaKnown RBP11.17□□□□□ -0.62
DDB1-217ENST00000540166 KRT28Q7Z3Y7 464 aa11.17□□□□□ -0.62
DDB1-217ENST00000540166 PHF8Q9UPP1 1060 aa11.17□□□□□ -0.62
DDB1-217ENST00000540166 ADGRL2O95490 1459 aa11.17□□□□□ -0.62
DDB1-217ENST00000540166 MAST1Q9Y2H9 1570 aa11.17□□□□□ -0.62
DDB1-217ENST00000540166 STAC3Q96MF2 364 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 RCAN3Q9UKA8 241 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 PLXNC1O60486 1568 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 MYO3AQ8NEV4 1616 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 PRDM11Q9NQV5 511 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 USP21Q9UK80 565 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 NOS1P29475 1434 aa11.16□□□□□ -0.62
DDB1-217ENST00000540166 FRAT2O75474 233 aaPredicted RBP11.16□□□□□ -0.62
DDB1-217ENST00000540166 DDX17Q92841 729 aaKnown RBP11.15□□□□□ -0.62
DDB1-217ENST00000540166 DCAF8L1A6NGE4 600 aa11.15□□□□□ -0.62
DDB1-217ENST00000540166 ORAI2Q96SN7 254 aa11.15□□□□□ -0.62
DDB1-217ENST00000540166 PIK3R4Q99570 1358 aa11.15□□□□□ -0.62
DDB1-217ENST00000540166 MROH2AA6NES4 1674 aa11.14□□□□□ -0.63
DDB1-217ENST00000540166 RRP9O43818 475 aaKnown RBP11.14□□□□□ -0.63
DDB1-217ENST00000540166 UPF2Q9HAU5 1272 aaKnown RBP11.14□□□□□ -0.63
DDB1-217ENST00000540166 STRN4Q9NRL3 753 aa11.14□□□□□ -0.63
DDB1-217ENST00000540166 RGS3P49796 1198 aa11.14□□□□□ -0.63
DDB1-217ENST00000540166 ADGRF5Q8IZF2 1346 aa11.14□□□□□ -0.63
DDB1-217ENST00000540166 RRP1P56182 461 aaKnown RBP11.14□□□□□ -0.63
DDB1-217ENST00000540166 EIF2AK4Q9P2K8 1649 aaKnown RBP11.13□□□□□ -0.63
DDB1-217ENST00000540166 SPATA31A6Q5VVP1 1343 aa11.13□□□□□ -0.63
DDB1-217ENST00000540166 NUTM2GQ5VZR2 741 aa11.13□□□□□ -0.63
DDB1-217ENST00000540166 BRINP3Q76B58 766 aa11.13□□□□□ -0.63
DDB1-217ENST00000540166 ANP32BQ92688 251 aaKnown RBP11.13□□□□□ -0.63
DDB1-217ENST00000540166 TRPC5Q9UL62 973 aaPredicted RBP11.12□□□□□ -0.63
DDB1-217ENST00000540166 SMG6Q86US8 1419 aaKnown RBP11.12□□□□□ -0.63
DDB1-217ENST00000540166 CEP152O94986 1710 aa11.11□□□□□ -0.63
DDB1-217ENST00000540166 IQSEC2Q5JU85 1478 aa11.11□□□□□ -0.63
DDB1-217ENST00000540166 A0A0U1RQG5 324 aaPredicted RBP11.11□□□□□ -0.63
DDB1-217ENST00000540166 GOLGA6L3A6NEY3 463 aa11.11□□□□□ -0.63
DDB1-217ENST00000540166 AFF2P51816 1311 aa11.11□□□□□ -0.63
DDB1-217ENST00000540166 SLKQ9H2G2 1235 aaPredicted RBP11.11□□□□□ -0.63
DDB1-217ENST00000540166 EIF3AQ14152 1382 aaKnown RBP11.11□□□□□ -0.63
DDB1-217ENST00000540166 PRDM15P57071 1507 aaPredicted RBP11.11□□□□□ -0.63
DDB1-217ENST00000540166 ABTB2Q8N961 1025 aa11.1□□□□□ -0.63
DDB1-217ENST00000540166 SPATA31D1Q6ZQQ2 1576 aa11.1□□□□□ -0.63
DDB1-217ENST00000540166 PDE3BQ13370 1112 aa11.1□□□□□ -0.63
DDB1-217ENST00000540166 ZC3H13Q5T200 1668 aaKnown RBP11.1□□□□□ -0.63
DDB1-217ENST00000540166 ILDR2Q71H61 639 aa11.1□□□□□ -0.63
DDB1-217ENST00000540166 HDGFL2Q7Z4V5 671 aaPredicted RBP11.09□□□□□ -0.63
DDB1-217ENST00000540166 GZF1Q9H116 711 aaPredicted RBP11.09□□□□□ -0.63
DDB1-217ENST00000540166 USP47Q96K76 1375 aa11.09□□□□□ -0.63
DDB1-217ENST00000540166 RBM6P78332 1123 aaKnown RBP11.09□□□□□ -0.63
DDB1-217ENST00000540166 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.09□□□□□ -0.63
DDB1-217ENST00000540166 LRRC7Q96NW7 1537 aa11.08□□□□□ -0.64
DDB1-217ENST00000540166 FAM135BQ49AJ0 1406 aa11.08□□□□□ -0.64
DDB1-217ENST00000540166 CC2D1BQ5T0F9 858 aaKnown RBP11.08□□□□□ -0.64
DDB1-217ENST00000540166 ADGRB3O60242 1522 aa11.08□□□□□ -0.64
DDB1-217ENST00000540166 ST20-MTHFSA0A0A6YYL1 179 aa11.07□□□□□ -0.64
DDB1-217ENST00000540166 SLC24A1O60721 1099 aa11.07□□□□□ -0.64
DDB1-217ENST00000540166 ZC3H6P61129 1189 aaKnown RBP11.07□□□□□ -0.64
DDB1-217ENST00000540166 FAM161AQ3B820 660 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms