RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 PLCD4Q9BRC7 762 aa12.02□□□□□ -0.49
COL4A6-208ENST00000538570 FANCD2Q9BXW9 1451 aa12.01□□□□□ -0.49
COL4A6-208ENST00000538570 DDX58O95786 925 aaKnown RBP12.01□□□□□ -0.49
COL4A6-208ENST00000538570 G3BP1Q13283 466 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL4A6-208ENST00000538570 FBXW7Q969H0 707 aa12.01□□□□□ -0.49
COL4A6-208ENST00000538570 APAF1O14727 1248 aa12.01□□□□□ -0.49
COL4A6-208ENST00000538570 HSP90B2PQ58FF3 399 aa12.01□□□□□ -0.49
COL4A6-208ENST00000538570 SAFBQ15424 915 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL4A6-208ENST00000538570 CCDC39Q9UFE4 941 aa12□□□□□ -0.49
COL4A6-208ENST00000538570 EVA1CP58658 441 aa12□□□□□ -0.49
COL4A6-208ENST00000538570 VPS37DQ86XT2 251 aa12□□□□□ -0.49
COL4A6-208ENST00000538570 IRX3P78415 501 aaPredicted RBP12□□□□□ -0.49
COL4A6-208ENST00000538570 CCDC43Q96MW1 224 aaKnown RBP12□□□□□ -0.49
COL4A6-208ENST00000538570 DIAPH1O60610 1272 aaKnown RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 NAT10Q9H0A0 1025 aaKnown RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 ERC2O15083 957 aa11.99□□□□□ -0.49
COL4A6-208ENST00000538570 CT47A1Q5JQC4 288 aaPredicted RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 AEBP2Q6ZN18 517 aaPredicted RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 H0YHG0 523 aa11.99□□□□□ -0.49
COL4A6-208ENST00000538570 HSP90AB4PQ58FF6 505 aa11.99□□□□□ -0.49
COL4A6-208ENST00000538570 OLFM4Q6UX06 510 aa11.99□□□□□ -0.49
COL4A6-208ENST00000538570 USP47Q96K76 1375 aa11.99□□□□□ -0.49
COL4A6-208ENST00000538570 NASPP49321 788 aaPredicted RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 BCL11BQ9C0K0 894 aaPredicted RBP11.99□□□□□ -0.49
COL4A6-208ENST00000538570 RIPK4P57078 832 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 FOSBP53539 338 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 GPATCH11Q8N954 259 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 NECTIN2Q92692 538 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 C22orf23Q9BZE7 217 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 VGFO15240 615 aaPredicted RBP11.98□□□□□ -0.49
COL4A6-208ENST00000538570 ODF2Q5BJF6 829 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 DEF6Q9H4E7 631 aa11.98□□□□□ -0.49
COL4A6-208ENST00000538570 FKBP5Q13451 457 aaPredicted RBP11.97□□□□□ -0.49
COL4A6-208ENST00000538570 CCDC173Q0VFZ6 552 aa11.97□□□□□ -0.49
COL4A6-208ENST00000538570 ERCC4Q92889 916 aaPredicted RBP11.96□□□□□ -0.49
COL4A6-208ENST00000538570 RBM25P49756 843 aaKnown RBP11.96□□□□□ -0.49
COL4A6-208ENST00000538570 DCTN1Q14203 1278 aa11.96□□□□□ -0.49
COL4A6-208ENST00000538570 HOMEZQ8IX15 550 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 CCDC191Q8NCU4 936 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 EPS15P42566 896 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 RALYLQ86SE5 291 aaKnown RBP11.96□□□□□ -0.5
COL4A6-208ENST00000538570 PDILTQ8N807 584 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 CAGE1Q8TC20 777 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 RUNDC1Q96C34 613 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 BRMS1Q9HCU9 246 aa11.96□□□□□ -0.5
COL4A6-208ENST00000538570 MSH5O43196 834 aa11.95□□□□□ -0.5
COL4A6-208ENST00000538570 CNKSR2Q8WXI2 1034 aa11.95□□□□□ -0.5
COL4A6-208ENST00000538570 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-208ENST00000538570 LETM1O95202 739 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-208ENST00000538570 AAMPQ13685 434 aa11.95□□□□□ -0.5
COL4A6-208ENST00000538570 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL4A6-208ENST00000538570 DHX57Q6P158 1386 aaKnown RBP11.95□□□□□ -0.5
COL4A6-208ENST00000538570 TNNT1P13805 278 aa11.95□□□□□ -0.5
COL4A6-208ENST00000538570 LNPKQ9C0E8 428 aa11.95□□□□□ -0.5
COL4A6-208ENST00000538570 MINK1Q8N4C8 1332 aaPredicted RBP11.95□□□□□ -0.5
COL4A6-208ENST00000538570 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.94□□□□□ -0.5
COL4A6-208ENST00000538570 NINLQ9Y2I6 1382 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 CDC45O75419 566 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 OFD1O75665 1012 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 HSP90AB2PQ58FF8 381 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 MYO6Q9UM54 1294 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 RUSC2Q8N2Y8 1516 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 GNAI1P63096 354 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 PRDM10Q9NQV6 1147 aa11.94□□□□□ -0.5
COL4A6-208ENST00000538570 XBP1P17861 261 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 PSMA5P28066 241 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 PTPRGP23470 1445 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 LEKR1Q6ZMV7 388 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 KRI1Q8N9T8 703 aaKnown RBP11.93□□□□□ -0.5
COL4A6-208ENST00000538570 TSPYL4Q9UJ04 414 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 SDF4Q9BRK5 362 aa11.93□□□□□ -0.5
COL4A6-208ENST00000538570 HMGN5P82970 282 aaKnown RBP11.92□□□□□ -0.5
COL4A6-208ENST00000538570 WASHC4Q2M389 1173 aa11.92□□□□□ -0.5
COL4A6-208ENST00000538570 TSPYL1Q9H0U9 437 aa11.92□□□□□ -0.5
COL4A6-208ENST00000538570 GIMAP7Q8NHV1 300 aa11.92□□□□□ -0.5
COL4A6-208ENST00000538570 ZFYVE27Q5T4F4 411 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 CCP110O43303 1012 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 PLCD3Q8N3E9 789 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 DYDC1Q8WWB3 177 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 TRAK2O60296 914 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 CNTROBQ8N137 903 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 NEUROD6Q96NK8 337 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 UQCRHLA0A096LP55 91 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 UQCRHP07919 91 aa11.91□□□□□ -0.5
COL4A6-208ENST00000538570 TRIM5Q9C035 493 aa11.9□□□□□ -0.5
COL4A6-208ENST00000538570 RNF214Q8ND24 703 aa11.9□□□□□ -0.5
COL4A6-208ENST00000538570 SMARCE1Q969G3 411 aa11.9□□□□□ -0.5
COL4A6-208ENST00000538570 CWC22Q9HCG8 908 aaKnown RBP11.9□□□□□ -0.5
COL4A6-208ENST00000538570 ZHX1Q9UKY1 873 aaPredicted RBP11.9□□□□□ -0.5
COL4A6-208ENST00000538570 TTLL5Q6EMB2 1281 aa11.9□□□□□ -0.5
COL4A6-208ENST00000538570 RIC3Q7Z5B4 369 aa11.9□□□□□ -0.5
COL4A6-208ENST00000538570 TSPY26PQ9H489 355 aa11.9□□□□□ -0.51
COL4A6-208ENST00000538570 IGF1RP08069 1367 aa11.9□□□□□ -0.51
COL4A6-208ENST00000538570 MBD3O95983 291 aa11.89□□□□□ -0.51
COL4A6-208ENST00000538570 SYTL4Q96C24 671 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-208ENST00000538570 SMC2O95347 1197 aa11.89□□□□□ -0.51
COL4A6-208ENST00000538570 RBM33Q96EV2 1170 aaKnown RBP11.89□□□□□ -0.51
COL4A6-208ENST00000538570 UBTFL1P0CB47 393 aaPredicted RBP11.89□□□□□ -0.51
COL4A6-208ENST00000538570 FILIP1LQ4L180 1135 aa11.89□□□□□ -0.51
COL4A6-208ENST00000538570 CCDC27Q2M243 656 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms