RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 C1orf141Q5JVX7 400 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 RNF20Q5VTR2 975 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 CTDP1Q9Y5B0 961 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-209ENST00000537178 ELL2O00472 640 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-209ENST00000537178 BICD2Q8TD16 824 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 TRDNQ13061 729 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 MIA2Q96PC5 1412 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 IL27Q8NEV9 243 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 ACBD3Q9H3P7 528 aa12.95□□□□□ -0.34
CLIP1-209ENST00000537178 CCDC7Q96M83 1385 aa12.94□□□□□ -0.34
CLIP1-209ENST00000537178 PKNOX2Q96KN3 472 aa12.94□□□□□ -0.34
CLIP1-209ENST00000537178 TRIM34Q9BYJ4 488 aa12.94□□□□□ -0.34
CLIP1-209ENST00000537178 RRP7AQ9Y3A4 280 aaKnown RBP12.94□□□□□ -0.34
CLIP1-209ENST00000537178 PZPP20742 1482 aa12.94□□□□□ -0.34
CLIP1-209ENST00000537178 EPRSP07814 1512 aaKnown RBP12.94□□□□□ -0.34
CLIP1-209ENST00000537178 ARGLU1Q9NWB6 273 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-209ENST00000537178 CHMP5Q9NZZ3 219 aa12.94□□□□□ -0.34
CLIP1-209ENST00000537178 RUFY1Q96T51 708 aa12.93□□□□□ -0.34
CLIP1-209ENST00000537178 C9orf78Q9NZ63 289 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-209ENST00000537178 NGEFQ8N5V2 710 aa12.93□□□□□ -0.34
CLIP1-209ENST00000537178 ADCY10Q96PN6 1610 aa12.93□□□□□ -0.34
CLIP1-209ENST00000537178 DDX19BQ9UMR2 479 aa12.93□□□□□ -0.34
CLIP1-209ENST00000537178 BCL2L13Q9BXK5 485 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 WASHC2CQ9Y4E1 1318 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 ADGBQ8N7X0 1667 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 IFIT2P09913 472 aaKnown RBP12.92□□□□□ -0.34
CLIP1-209ENST00000537178 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-209ENST00000537178 COG3Q96JB2 828 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 AK7Q96M32 723 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 API5Q9BZZ5 524 aaKnown RBP12.92□□□□□ -0.34
CLIP1-209ENST00000537178 KIF14Q15058 1648 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 DHX16O60231 1041 aaKnown RBP12.92□□□□□ -0.34
CLIP1-209ENST00000537178 ROCK1Q13464 1354 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 ADAMTS12P58397 1594 aa12.92□□□□□ -0.34
CLIP1-209ENST00000537178 APPP05067 770 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 TTC5Q8N0Z6 440 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 ANO2Q9NQ90 1003 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 SLC4A3P48751 1232 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 NUCB2P80303 420 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 HSP90B2PQ58FF3 399 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 CCDC73Q6ZRK6 1079 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 MNS1Q8NEH6 495 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 CCDC43Q96MW1 224 aaKnown RBP12.91□□□□□ -0.34
CLIP1-209ENST00000537178 TRAK1Q9UPV9 953 aa12.91□□□□□ -0.34
CLIP1-209ENST00000537178 SASS6Q6UVJ0 657 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 PRKRIP1Q9H875 184 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-209ENST00000537178 ZBED9Q6R2W3 1325 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 RAD21O60216 631 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 COG6Q9Y2V7 657 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 RRP1P56182 461 aaKnown RBP12.9□□□□□ -0.34
CLIP1-209ENST00000537178 SAFBQ15424 915 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLIP1-209ENST00000537178 FAM13BQ9NYF5 915 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 NBPF8Q3BBV2 869 aa12.9□□□□□ -0.34
CLIP1-209ENST00000537178 DDX58O95786 925 aaKnown RBP12.89□□□□□ -0.35
CLIP1-209ENST00000537178 SMG6Q86US8 1419 aaKnown RBP12.89□□□□□ -0.35
CLIP1-209ENST00000537178 NUTM2FA1L443 756 aa12.89□□□□□ -0.35
CLIP1-209ENST00000537178 CT47A1Q5JQC4 288 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-209ENST00000537178 NOM1Q5C9Z4 860 aaKnown RBP12.89□□□□□ -0.35
CLIP1-209ENST00000537178 KRI1Q8N9T8 703 aaKnown RBP12.89□□□□□ -0.35
CLIP1-209ENST00000537178 PANK3Q9H999 370 aa12.89□□□□□ -0.35
CLIP1-209ENST00000537178 SMC3Q9UQE7 1217 aa12.89□□□□□ -0.35
CLIP1-209ENST00000537178 ERICH2A1L162 156 aa12.89□□□□□ -0.35
CLIP1-209ENST00000537178 VPS37CA5D8V6 355 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-209ENST00000537178 CNKSR2Q8WXI2 1034 aa12.88□□□□□ -0.35
CLIP1-209ENST00000537178 HSP90AB4PQ58FF6 505 aa12.88□□□□□ -0.35
CLIP1-209ENST00000537178 EXOC6Q8TAG9 804 aa12.88□□□□□ -0.35
CLIP1-209ENST00000537178 CDK13Q14004 1512 aaKnown RBP12.88□□□□□ -0.35
CLIP1-209ENST00000537178 CCDC173Q0VFZ6 552 aa12.88□□□□□ -0.35
CLIP1-209ENST00000537178 G3BP1Q13283 466 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLIP1-209ENST00000537178 FAM43AQ8N2R8 423 aa12.88□□□□□ -0.35
CLIP1-209ENST00000537178 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 GAPVD1Q14C86 1478 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 NFXL1Q6ZNB6 911 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 VPS37DQ86XT2 251 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 CRBNQ96SW2 442 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 IQGAP2Q13576 1575 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 ODF2Q5BJF6 829 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 ST20-MTHFSA0A0A6YYL1 179 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 NUTM2DQ5VT03 806 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-209ENST00000537178 ABCC5O15440 1437 aa12.87□□□□□ -0.35
CLIP1-209ENST00000537178 NAP1L1P55209 391 aaKnown RBP12.86□□□□□ -0.35
CLIP1-209ENST00000537178 EVC2Q86UK5 1308 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 IFT57Q9NWB7 429 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 PLIN1O60240 522 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 OFD1O75665 1012 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 EIF2S2P20042 333 aaKnown RBP12.86□□□□□ -0.35
CLIP1-209ENST00000537178 DCTN1Q14203 1278 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 INTS3Q68E01 1043 aaKnown RBP12.86□□□□□ -0.35
CLIP1-209ENST00000537178 DZIP1LQ8IYY4 767 aaKnown RBP12.86□□□□□ -0.35
CLIP1-209ENST00000537178 DISP1Q96F81 1524 aa12.86□□□□□ -0.35
CLIP1-209ENST00000537178 ADGRL2O95490 1459 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 DAPK1P53355 1430 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 CDC42BPAQ5VT25 1732 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 EVA1CP58658 441 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 VGFO15240 615 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-209ENST00000537178 R3HCC1Q9Y3T6 440 aaKnown RBP12.85□□□□□ -0.35
CLIP1-209ENST00000537178 UHRF1BP1Q6BDS2 1440 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 LRPPRCP42704 1394 aaKnown RBP12.85□□□□□ -0.35
CLIP1-209ENST00000537178 ERC2O15083 957 aa12.85□□□□□ -0.35
CLIP1-209ENST00000537178 CCDC191Q8NCU4 936 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms