RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 ATP1B4Q9UN42 357 aaPredicted RBP11.61□□□□□ -0.55
PRKDC-205ENST00000535375 GJA5P36382 358 aa11.6□□□□□ -0.55
PRKDC-205ENST00000535375 MYSM1Q5VVJ2 828 aa11.6□□□□□ -0.55
PRKDC-205ENST00000535375 RSBN1LQ6PCB5 846 aaPredicted RBP11.6□□□□□ -0.55
PRKDC-205ENST00000535375 S1PR4O95977 384 aa11.59□□□□□ -0.55
PRKDC-205ENST00000535375 USB1Q9BQ65 265 aaKnown RBP11.59□□□□□ -0.55
PRKDC-205ENST00000535375 IRX2Q9BZI1 471 aaPredicted RBP11.59□□□□□ -0.55
PRKDC-205ENST00000535375 PCDHGC3Q9UN70 934 aa11.59□□□□□ -0.55
PRKDC-205ENST00000535375 SPTLC1O15269 473 aa11.58□□□□□ -0.56
PRKDC-205ENST00000535375 IL27Q8NEV9 243 aa11.58□□□□□ -0.56
PRKDC-205ENST00000535375 CSPP1Q1MSJ5 1256 aa11.57□□□□□ -0.56
PRKDC-205ENST00000535375 SYMPKQ92797 1274 aaKnown RBP11.57□□□□□ -0.56
PRKDC-205ENST00000535375 POLR3EQ9NVU0 708 aa11.57□□□□□ -0.56
PRKDC-205ENST00000535375 FAM160A2Q8N612 972 aaPredicted RBP11.56□□□□□ -0.56
PRKDC-205ENST00000535375 PLEKHG3A1L390 1219 aa11.55□□□□□ -0.56
PRKDC-205ENST00000535375 CLK2P49760 499 aaKnown RBP11.55□□□□□ -0.56
PRKDC-205ENST00000535375 MTMR2Q13614 643 aa11.55□□□□□ -0.56
PRKDC-205ENST00000535375 MSS51Q4VC12 460 aa11.55□□□□□ -0.56
PRKDC-205ENST00000535375 RETREG3Q86VR2 466 aa11.55□□□□□ -0.56
PRKDC-205ENST00000535375 SPDYE5A6NIY4 337 aa11.54□□□□□ -0.56
PRKDC-205ENST00000535375 RNF223E7ERA6 249 aa11.54□□□□□ -0.56
PRKDC-205ENST00000535375 SKIV2LQ15477 1246 aaKnown RBP11.54□□□□□ -0.56
PRKDC-205ENST00000535375 ZBTB3Q9H5J0 574 aa11.54□□□□□ -0.56
PRKDC-205ENST00000535375 PCDHB15Q9Y5E8 787 aa11.54□□□□□ -0.56
PRKDC-205ENST00000535375 NUTM2BA6NNL0 878 aaPredicted RBP11.53□□□□□ -0.56
PRKDC-205ENST00000535375 NUTM2EB1AL46 878 aaPredicted RBP11.53□□□□□ -0.56
PRKDC-205ENST00000535375 SH3D19Q5HYK7 790 aa11.53□□□□□ -0.56
PRKDC-205ENST00000535375 NUTM2DQ5VT03 806 aaPredicted RBP11.53□□□□□ -0.56
PRKDC-205ENST00000535375 NUTM2AQ8IVF1 878 aaPredicted RBP11.53□□□□□ -0.56
PRKDC-205ENST00000535375 PRKD2Q9BZL6 878 aa11.53□□□□□ -0.56
PRKDC-205ENST00000535375 LIMD1Q9UGP4 676 aa11.53□□□□□ -0.56
PRKDC-205ENST00000535375 PPEF1O14829 653 aaPredicted RBP11.52□□□□□ -0.57
PRKDC-205ENST00000535375 PRPF38BQ5VTL8 546 aaKnown RBP11.51□□□□□ -0.57
PRKDC-205ENST00000535375 ANKLE1Q8NAG6 615 aa11.51□□□□□ -0.57
PRKDC-205ENST00000535375 PRDM9Q9NQV7 894 aa11.51□□□□□ -0.57
PRKDC-205ENST00000535375 TUSC1Q2TAM9 212 aa11.5□□□□□ -0.57
PRKDC-205ENST00000535375 HRCP23327 699 aa11.49□□□□□ -0.57
PRKDC-205ENST00000535375 PRR7Q8TB68 274 aa11.49□□□□□ -0.57
PRKDC-205ENST00000535375 CABLES1Q8TDN4 633 aa11.49□□□□□ -0.57
PRKDC-205ENST00000535375 V9GY48 417 aaPredicted RBP11.49□□□□□ -0.57
PRKDC-205ENST00000535375 MMP16P51512 607 aa11.48□□□□□ -0.57
PRKDC-205ENST00000535375 DXOO77932 396 aaKnown RBP11.47□□□□□ -0.57
PRKDC-205ENST00000535375 JUNDP17535 347 aa11.47□□□□□ -0.57
PRKDC-205ENST00000535375 PCMTD1Q96MG8 357 aaPredicted RBP11.47□□□□□ -0.57
PRKDC-205ENST00000535375 FCF1Q9Y324 198 aaKnown RBP11.47□□□□□ -0.57
PRKDC-205ENST00000535375 LILRB3O75022 631 aa11.46□□□□□ -0.57
PRKDC-205ENST00000535375 QPCTQ16769 361 aa11.46□□□□□ -0.57
PRKDC-205ENST00000535375 PROCA1Q8NCQ7 364 aaPredicted RBP11.46□□□□□ -0.57
PRKDC-205ENST00000535375 GOPCQ9HD26 462 aa11.46□□□□□ -0.57
PRKDC-205ENST00000535375 CCDC24Q8N4L8 307 aa11.45□□□□□ -0.58
PRKDC-205ENST00000535375 TSC1Q92574 1164 aa11.45□□□□□ -0.58
PRKDC-205ENST00000535375 SLC19A1P41440 591 aa11.44□□□□□ -0.58
PRKDC-205ENST00000535375 CFAP99D6REC4 459 aa11.42□□□□□ -0.58
PRKDC-205ENST00000535375 ZBTB24O43167 697 aaPredicted RBP11.42□□□□□ -0.58
PRKDC-205ENST00000535375 DESI1Q6ICB0 168 aa11.42□□□□□ -0.58
PRKDC-205ENST00000535375 LAPTM4AQ15012 233 aa11.41□□□□□ -0.58
PRKDC-205ENST00000535375 HELBQ8NG08 1087 aaPredicted RBP11.41□□□□□ -0.58
PRKDC-205ENST00000535375 NUDT12Q9BQG2 462 aa11.41□□□□□ -0.58
PRKDC-205ENST00000535375 RTL5Q5HYW3 569 aaPredicted RBP11.4□□□□□ -0.58
PRKDC-205ENST00000535375 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.4□□□□□ -0.58
PRKDC-205ENST00000535375 GFRA3O60609 400 aa11.39□□□□□ -0.59
PRKDC-205ENST00000535375 CD2BP2O95400 341 aaKnown RBP11.38□□□□□ -0.59
PRKDC-205ENST00000535375 CCNYL3P0C7X3 344 aa11.38□□□□□ -0.59
PRKDC-205ENST00000535375 PTPRNQ16849 979 aa11.38□□□□□ -0.59
PRKDC-205ENST00000535375 PLA2G2CQ5R387 149 aa11.38□□□□□ -0.59
PRKDC-205ENST00000535375 RPIAP49247 311 aa11.37□□□□□ -0.59
PRKDC-205ENST00000535375 Q6ZNB5 142 aa11.37□□□□□ -0.59
PRKDC-205ENST00000535375 LIAT1Q6ZQX7 453 aa11.37□□□□□ -0.59
PRKDC-205ENST00000535375 LYPD8Q6UX82 237 aa11.36□□□□□ -0.59
PRKDC-205ENST00000535375 CTHP32929 405 aa11.35□□□□□ -0.59
PRKDC-205ENST00000535375 PPP2R2DQ66LE6 453 aa11.35□□□□□ -0.59
PRKDC-205ENST00000535375 SPRYD7Q5W111 196 aa11.34□□□□□ -0.59
PRKDC-205ENST00000535375 EMID1Q96A84 441 aaPredicted RBP11.33□□□□□ -0.6
PRKDC-205ENST00000535375 EVA1BQ9NVM1 165 aa11.33□□□□□ -0.6
PRKDC-205ENST00000535375 PDZRN3Q9UPQ7 1066 aa11.33□□□□□ -0.6
PRKDC-205ENST00000535375 NRG2O14511 850 aaPredicted RBP11.32□□□□□ -0.6
PRKDC-205ENST00000535375 AP1G2O75843 785 aa11.32□□□□□ -0.6
PRKDC-205ENST00000535375 KCNH2Q12809 1159 aa11.32□□□□□ -0.6
PRKDC-205ENST00000535375 ZNF598Q86UK7 904 aaKnown RBP11.32□□□□□ -0.6
PRKDC-205ENST00000535375 RFC5P40937 340 aa11.31□□□□□ -0.6
PRKDC-205ENST00000535375 ZNF697Q5TEC3 545 aa11.31□□□□□ -0.6
PRKDC-205ENST00000535375 PER1O15534 1290 aaPredicted RBP11.3□□□□□ -0.6
PRKDC-205ENST00000535375 CTDSPL2Q05D32 466 aa11.3□□□□□ -0.6
PRKDC-205ENST00000535375 TRIM32Q13049 653 aa11.3□□□□□ -0.6
PRKDC-205ENST00000535375 TMEM259Q4ZIN3 620 aa11.29□□□□□ -0.6
PRKDC-205ENST00000535375 FBXO31Q5XUX0 539 aaPredicted RBP11.29□□□□□ -0.6
PRKDC-205ENST00000535375 PTCRAQ6ISU1 281 aaPredicted RBP11.29□□□□□ -0.6
PRKDC-205ENST00000535375 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.61
PRKDC-205ENST00000535375 MAP10Q9P2G4 905 aa11.26□□□□□ -0.61
PRKDC-205ENST00000535375 FOXC1Q12948 553 aa11.25□□□□□ -0.61
PRKDC-205ENST00000535375 F12P00748 615 aaPredicted RBP11.24□□□□□ -0.61
PRKDC-205ENST00000535375 LRRN4Q8WUT4 740 aa11.24□□□□□ -0.61
PRKDC-205ENST00000535375 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
PRKDC-205ENST00000535375 TRIM67Q6ZTA4 783 aa11.23□□□□□ -0.61
PRKDC-205ENST00000535375 ARMC2Q8NEN0 867 aa11.23□□□□□ -0.61
PRKDC-205ENST00000535375 WNT7BP56706 349 aa11.22□□□□□ -0.61
PRKDC-205ENST00000535375 BAP1Q92560 729 aa11.22□□□□□ -0.61
PRKDC-205ENST00000535375 PRR20EP86478 221 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 PRR20CP86479 221 aa11.21□□□□□ -0.61
PRKDC-205ENST00000535375 PRR20DP86480 221 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 2145.7 ms