RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	PLEKHH1	Q9ULM0	1364 aa		33.34	■■■□□ 2.93
CAPN1-222	ENST00000532285	JCAD	Q9P266	1359 aa		33.32	■■■□□ 2.92
CAPN1-222	ENST00000532285	DLC1	Q96QB1	1528 aa		33.31	■■■□□ 2.92
CAPN1-222	ENST00000532285	KIAA1210	Q9ULL0	1709 aa		33.27	■■■□□ 2.92
CAPN1-222	ENST00000532285	PRAM1	Q96QH2	718 aa		33.25	■■■□□ 2.91
CAPN1-222	ENST00000532285	SHPRH	Q149N8	1683 aa		33.25	■■■□□ 2.91
CAPN1-222	ENST00000532285	FMN2	Q9NZ56	1722 aa		33.25	■■■□□ 2.91
CAPN1-222	ENST00000532285	ORAI2	Q96SN7	254 aa		33.24	■■■□□ 2.91
CAPN1-222	ENST00000532285	SIN3A	Q96ST3	1273 aa		33.24	■■■□□ 2.91
CAPN1-222	ENST00000532285	PHF23	Q9BUL5	403 aa	Predicted RBP	33.24	■■■□□ 2.91
CAPN1-222	ENST00000532285	POGK	Q9P215	609 aa		33.23	■■■□□ 2.91
CAPN1-222	ENST00000532285	TRAK1	Q9UPV9	953 aa		33.23	■■■□□ 2.91
CAPN1-222	ENST00000532285	ILDR2	Q71H61	639 aa		33.21	■■■□□ 2.91
CAPN1-222	ENST00000532285	NEUROD1	Q13562	356 aa		33.19	■■■□□ 2.9
CAPN1-222	ENST00000532285	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.19	■■■□□ 2.9
CAPN1-222	ENST00000532285	DDX17	Q92841	729 aa	Known RBP	33.19	■■■□□ 2.9
CAPN1-222	ENST00000532285	ESCO1	Q5FWF5	840 aa		33.18	■■■□□ 2.9
CAPN1-222	ENST00000532285	L3MBTL2	Q969R5	705 aa		33.18	■■■□□ 2.9
CAPN1-222	ENST00000532285	LRRC59	Q96AG4	307 aa	Known RBP	33.18	■■■□□ 2.9
CAPN1-222	ENST00000532285	SPATA31A6	Q5VVP1	1343 aa		33.18	■■■□□ 2.9
CAPN1-222	ENST00000532285	ARHGEF28	Q8N1W1	1705 aa	Known RBP	33.16	■■■□□ 2.9
CAPN1-222	ENST00000532285	NUTM2F	A1L443	756 aa		33.15	■■■□□ 2.9
CAPN1-222	ENST00000532285	RGPD8	O14715	1765 aa	Predicted RBP	33.15	■■■□□ 2.9
CAPN1-222	ENST00000532285	ADGRB2	O60241	1585 aa		33.13	■■■□□ 2.89
CAPN1-222	ENST00000532285	SOS2	Q07890	1332 aa	Predicted RBP	33.11	■■■□□ 2.89
CAPN1-222	ENST00000532285	KIF1A	Q12756	1690 aa		33.1	■■■□□ 2.89
CAPN1-222	ENST00000532285	NPHP3	Q7Z494	1330 aa		33.09	■■■□□ 2.89
CAPN1-222	ENST00000532285	NBPF1	Q3BBV0	1214 aa		33.07	■■■□□ 2.88
CAPN1-222	ENST00000532285	MINK1	Q8N4C8	1332 aa	Predicted RBP	33.06	■■■□□ 2.88
CAPN1-222	ENST00000532285	LRP6	O75581	1613 aa		33.06	■■■□□ 2.88
CAPN1-222	ENST00000532285	FOXO3	O43524	673 aa		33.05	■■■□□ 2.88
CAPN1-222	ENST00000532285	PNPLA6	Q8IY17	1366 aa		33.05	■■■□□ 2.88
CAPN1-222	ENST00000532285	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.04	■■■□□ 2.88
CAPN1-222	ENST00000532285	RGS17	Q9UGC6	210 aa	Predicted RBP	33.04	■■■□□ 2.88
CAPN1-222	ENST00000532285	PXDN	Q92626	1479 aa		33.02	■■■□□ 2.88
CAPN1-222	ENST00000532285	TRPM1	Q7Z4N2	1603 aa		33.02	■■■□□ 2.88
CAPN1-222	ENST00000532285	USP32	Q8NFA0	1604 aa		33.02	■■■□□ 2.88
CAPN1-222	ENST00000532285	ANKAR	Q7Z5J8	1434 aa		33.02	■■■□□ 2.88
CAPN1-222	ENST00000532285	EIF3A	Q14152	1382 aa	Known RBP	33.01	■■■□□ 2.88
CAPN1-222	ENST00000532285	MEX3C	Q5U5Q3	659 aa	Known RBP	33.01	■■■□□ 2.87
CAPN1-222	ENST00000532285	NUTM2B	A6NNL0	878 aa	Predicted RBP	33	■■■□□ 2.87
CAPN1-222	ENST00000532285	NUTM2E	B1AL46	878 aa	Predicted RBP	33	■■■□□ 2.87
CAPN1-222	ENST00000532285	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33	■■■□□ 2.87
CAPN1-222	ENST00000532285	PHF8	Q9UPP1	1060 aa		33	■■■□□ 2.87
CAPN1-222	ENST00000532285	WASL	O00401	505 aa	Predicted RBP	32.99	■■■□□ 2.87
CAPN1-222	ENST00000532285	XPC	Q01831	940 aa	Predicted RBP	32.96	■■■□□ 2.87
CAPN1-222	ENST00000532285	TULP4	Q9NRJ4	1543 aa		32.96	■■■□□ 2.87
CAPN1-222	ENST00000532285	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.95	■■■□□ 2.86
CAPN1-222	ENST00000532285	TONSL	Q96HA7	1378 aa		32.94	■■■□□ 2.86
CAPN1-222	ENST00000532285	KRT28	Q7Z3Y7	464 aa		32.91	■■■□□ 2.86
CAPN1-222	ENST00000532285	ITSN1	Q15811	1721 aa		32.91	■■■□□ 2.86
CAPN1-222	ENST00000532285	SOCS7	O14512	581 aa		32.9	■■■□□ 2.86
CAPN1-222	ENST00000532285	ROCK2	O75116	1388 aa	Known RBP	32.89	■■■□□ 2.86
CAPN1-222	ENST00000532285	PRR36	Q9H6K5	1346 aa		32.89	■■■□□ 2.86
CAPN1-222	ENST00000532285	PSME1	Q06323	249 aa		32.89	■■■□□ 2.86
CAPN1-222	ENST00000532285	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.88	■■■□□ 2.85
CAPN1-222	ENST00000532285	POTEA	Q6S8J7	498 aa		32.88	■■■□□ 2.85
CAPN1-222	ENST00000532285	PMFBP1	Q8TBY8	1022 aa		32.88	■■■□□ 2.85
CAPN1-222	ENST00000532285	QRICH2	Q9H0J4	1663 aa		32.88	■■■□□ 2.85
CAPN1-222	ENST00000532285	NBPF8	Q3BBV2	869 aa		32.87	■■■□□ 2.85
CAPN1-222	ENST00000532285	SPATA31A3	Q5VYP0	1347 aa		32.86	■■■□□ 2.85
CAPN1-222	ENST00000532285	CDK19	Q9BWU1	502 aa		32.86	■■■□□ 2.85
CAPN1-222	ENST00000532285	ZNF772	Q68DY9	489 aa	Predicted RBP	32.85	■■■□□ 2.85
CAPN1-222	ENST00000532285	PCGF6	Q9BYE7	350 aa		32.85	■■■□□ 2.85
CAPN1-222	ENST00000532285	ATP7B	P35670	1465 aa		32.83	■■■□□ 2.85
CAPN1-222	ENST00000532285	NUDT16	Q96DE0	195 aa	Known RBP	32.83	■■■□□ 2.85
CAPN1-222	ENST00000532285	SBNO1	A3KN83	1393 aa		32.82	■■■□□ 2.84
CAPN1-222	ENST00000532285	ADAMTS2	O95450	1211 aa		32.81	■■■□□ 2.84
CAPN1-222	ENST00000532285	TNS3	Q68CZ2	1445 aa		32.8	■■■□□ 2.84
CAPN1-222	ENST00000532285	C8orf37	Q96NL8	207 aa		32.8	■■■□□ 2.84
CAPN1-222	ENST00000532285	GPRASP1	Q5JY77	1395 aa		32.8	■■■□□ 2.84
CAPN1-222	ENST00000532285	MARF1	Q9Y4F3	1742 aa	Known RBP	32.8	■■■□□ 2.84
CAPN1-222	ENST00000532285	AFF2	P51816	1311 aa		32.79	■■■□□ 2.84
CAPN1-222	ENST00000532285	TOPAZ1	Q8N9V7	1692 aa		32.78	■■■□□ 2.84
CAPN1-222	ENST00000532285	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.77	■■■□□ 2.84
CAPN1-222	ENST00000532285	NGDN	Q8NEJ9	315 aa	Known RBP	32.77	■■■□□ 2.84
CAPN1-222	ENST00000532285	NGLY1	Q96IV0	654 aa		32.75	■■■□□ 2.83
CAPN1-222	ENST00000532285	CCDC61	Q9Y6R9	512 aa		32.75	■■■□□ 2.83
CAPN1-222	ENST00000532285	RALGAPB	Q86X10	1494 aa		32.74	■■■□□ 2.83
CAPN1-222	ENST00000532285	ARHGEF10	O15013	1369 aa		32.73	■■■□□ 2.83
CAPN1-222	ENST00000532285	SRPK2	P78362	688 aa	Known RBP	32.73	■■■□□ 2.83
CAPN1-222	ENST00000532285	LMOD2	Q6P5Q4	547 aa		32.71	■■■□□ 2.83
CAPN1-222	ENST00000532285	CARD11	Q9BXL7	1154 aa		32.71	■■■□□ 2.83
CAPN1-222	ENST00000532285	ALS2	Q96Q42	1657 aa		32.71	■■■□□ 2.83
CAPN1-222	ENST00000532285	CLSPN	Q9HAW4	1339 aa		32.7	■■■□□ 2.82
CAPN1-222	ENST00000532285	PLEKHG3	A1L390	1219 aa		32.68	■■■□□ 2.82
CAPN1-222	ENST00000532285	EVC2	Q86UK5	1308 aa		32.68	■■■□□ 2.82
CAPN1-222	ENST00000532285	CABP2	Q9NPB3	220 aa		32.67	■■■□□ 2.82
CAPN1-222	ENST00000532285	POLR3A	O14802	1390 aa	Predicted RBP	32.67	■■■□□ 2.82
CAPN1-222	ENST00000532285	ABCA3	Q99758	1704 aa		32.66	■■■□□ 2.82
CAPN1-222	ENST00000532285	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.65	■■■□□ 2.82
CAPN1-222	ENST00000532285	ACE	P12821	1306 aa		32.65	■■■□□ 2.82
CAPN1-222	ENST00000532285	RXRB	P28702	533 aa		32.64	■■■□□ 2.82
CAPN1-222	ENST00000532285	HAP1	P54257	671 aa	Predicted RBP	32.64	■■■□□ 2.82
CAPN1-222	ENST00000532285	QTRT2	Q9H974	415 aa	Known RBP	32.64	■■■□□ 2.82
CAPN1-222	ENST00000532285	PPIP5K1	Q6PFW1	1433 aa		32.63	■■■□□ 2.81
CAPN1-222	ENST00000532285	PAK3	O75914	559 aa	Predicted RBP	32.63	■■■□□ 2.81
CAPN1-222	ENST00000532285	USP21	Q9UK80	565 aa		32.63	■■■□□ 2.81
CAPN1-222	ENST00000532285	CABLES1	Q8TDN4	633 aa		32.62	■■■□□ 2.81
CAPN1-222	ENST00000532285	TIMELESS	Q9UNS1	1208 aa		32.6	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms