RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PLEKHH1Q9ULM0 1364 aa20.71■□□□□ 0.91
CPSF1-206ENST00000531480 CDC42BPGQ6DT37 1551 aa20.7■□□□□ 0.9
CPSF1-206ENST00000531480 ROCK2O75116 1388 aaKnown RBP20.7■□□□□ 0.9
CPSF1-206ENST00000531480 ADGRB2O60241 1585 aa20.69■□□□□ 0.9
CPSF1-206ENST00000531480 HSPA1LP34931 641 aa20.68■□□□□ 0.9
CPSF1-206ENST00000531480 WAPLQ7Z5K2 1190 aa20.68■□□□□ 0.9
CPSF1-206ENST00000531480 TRAK1Q9UPV9 953 aa20.68■□□□□ 0.9
CPSF1-206ENST00000531480 PRAM1Q96QH2 718 aa20.66■□□□□ 0.9
CPSF1-206ENST00000531480 ILDR2Q71H61 639 aa20.65■□□□□ 0.9
CPSF1-206ENST00000531480 CADPS2Q86UW7 1296 aa20.65■□□□□ 0.9
CPSF1-206ENST00000531480 MST1RQ04912 1400 aa20.62■□□□□ 0.89
CPSF1-206ENST00000531480 FMN2Q9NZ56 1722 aa20.62■□□□□ 0.89
CPSF1-206ENST00000531480 C14orf37Q86TY3 774 aa20.62■□□□□ 0.89
CPSF1-206ENST00000531480 MED1Q15648 1581 aaPredicted RBP20.62■□□□□ 0.89
CPSF1-206ENST00000531480 QRICH2Q9H0J4 1663 aa20.61■□□□□ 0.89
CPSF1-206ENST00000531480 ATF3P18847 181 aa20.6■□□□□ 0.89
CPSF1-206ENST00000531480 POGKQ9P215 609 aa20.6■□□□□ 0.89
CPSF1-206ENST00000531480 CARD11Q9BXL7 1154 aa20.59■□□□□ 0.89
CPSF1-206ENST00000531480 SLAIN2Q9P270 581 aa20.59■□□□□ 0.89
CPSF1-206ENST00000531480 EIF3AQ14152 1382 aaKnown RBP20.59■□□□□ 0.89
CPSF1-206ENST00000531480 ROBO1Q9Y6N7 1651 aa20.58■□□□□ 0.89
CPSF1-206ENST00000531480 SBNO2Q9Y2G9 1366 aa20.58■□□□□ 0.88
CPSF1-206ENST00000531480 CENPJQ9HC77 1338 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-206ENST00000531480 C1orf167Q5SNV9 1468 aa20.57■□□□□ 0.88
CPSF1-206ENST00000531480 USP32Q8NFA0 1604 aa20.55■□□□□ 0.88
CPSF1-206ENST00000531480 SAFB2Q14151 953 aaKnown RBP eCLIP20.54■□□□□ 0.88
CPSF1-206ENST00000531480 TULP4Q9NRJ4 1543 aa20.53■□□□□ 0.88
CPSF1-206ENST00000531480 ANKARQ7Z5J8 1434 aa20.53■□□□□ 0.88
CPSF1-206ENST00000531480 MINK1Q8N4C8 1332 aaPredicted RBP20.53■□□□□ 0.88
CPSF1-206ENST00000531480 RGPD8O14715 1765 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-206ENST00000531480 WASLO00401 505 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-206ENST00000531480 NHSL1Q5SYE7 1610 aa20.5■□□□□ 0.87
CPSF1-206ENST00000531480 AHDC1Q5TGY3 1603 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-206ENST00000531480 BRINP3Q76B58 766 aa20.5■□□□□ 0.87
CPSF1-206ENST00000531480 USP47Q96K76 1375 aa20.49■□□□□ 0.87
CPSF1-206ENST00000531480 HIRIP3Q9BW71 556 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-206ENST00000531480 TOPAZ1Q8N9V7 1692 aa20.48■□□□□ 0.87
CPSF1-206ENST00000531480 ATP7BP35670 1465 aa20.48■□□□□ 0.87
CPSF1-206ENST00000531480 KIF1AQ12756 1690 aa20.48■□□□□ 0.87
CPSF1-206ENST00000531480 ITSN1Q15811 1721 aa20.47■□□□□ 0.87
CPSF1-206ENST00000531480 TESK2Q96S53 571 aa20.47■□□□□ 0.87
CPSF1-206ENST00000531480 PRR36Q9H6K5 1346 aa20.46■□□□□ 0.87
CPSF1-206ENST00000531480 ST20-MTHFSA0A0A6YYL1 179 aa20.45■□□□□ 0.86
CPSF1-206ENST00000531480 CDK19Q9BWU1 502 aa20.45■□□□□ 0.86
CPSF1-206ENST00000531480 ORAI2Q96SN7 254 aa20.44■□□□□ 0.86
CPSF1-206ENST00000531480 COL16A1Q07092 1604 aaPredicted RBP20.44■□□□□ 0.86
CPSF1-206ENST00000531480 SOCS7O14512 581 aa20.43■□□□□ 0.86
CPSF1-206ENST00000531480 PHF23Q9BUL5 403 aaPredicted RBP20.43■□□□□ 0.86
CPSF1-206ENST00000531480 PHLPP1O60346 1717 aa20.43■□□□□ 0.86
CPSF1-206ENST00000531480 EVC2Q86UK5 1308 aa20.43■□□□□ 0.86
CPSF1-206ENST00000531480 SLC24A1O60721 1099 aa20.42■□□□□ 0.86
CPSF1-206ENST00000531480 PUS7Q96PZ0 661 aaKnown RBP20.41■□□□□ 0.86
CPSF1-206ENST00000531480 ESCO1Q5FWF5 840 aa20.4■□□□□ 0.86
CPSF1-206ENST00000531480 NUDT16Q96DE0 195 aaKnown RBP20.4■□□□□ 0.86
CPSF1-206ENST00000531480 NUTM2FA1L443 756 aa20.39■□□□□ 0.85
CPSF1-206ENST00000531480 PXDNQ92626 1479 aa20.38■□□□□ 0.85
CPSF1-206ENST00000531480 CCDC61Q9Y6R9 512 aa20.38■□□□□ 0.85
CPSF1-206ENST00000531480 SOS2Q07890 1332 aaPredicted RBP20.37■□□□□ 0.85
CPSF1-206ENST00000531480 EIF4G2P78344 907 aaKnown RBP eCLIP20.37■□□□□ 0.85
CPSF1-206ENST00000531480 PHF8Q9UPP1 1060 aa20.37■□□□□ 0.85
CPSF1-206ENST00000531480 POLR3AO14802 1390 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-206ENST00000531480 NPHP3Q7Z494 1330 aa20.36■□□□□ 0.85
CPSF1-206ENST00000531480 PLEKHG3A1L390 1219 aa20.36■□□□□ 0.85
CPSF1-206ENST00000531480 CABP2Q9NPB3 220 aa20.36■□□□□ 0.85
CPSF1-206ENST00000531480 ATAD2Q6PL18 1390 aa20.35■□□□□ 0.85
CPSF1-206ENST00000531480 SRPK2P78362 688 aaKnown RBP20.35■□□□□ 0.85
CPSF1-206ENST00000531480 TRPM3Q9HCF6 1732 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-206ENST00000531480 ZEB1P37275 1124 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-206ENST00000531480 SHPRHQ149N8 1683 aa20.33■□□□□ 0.85
CPSF1-206ENST00000531480 HSPA5P11021 654 aaKnown RBP20.33■□□□□ 0.85
CPSF1-206ENST00000531480 PPIP5K1Q6PFW1 1433 aa20.33■□□□□ 0.84
CPSF1-206ENST00000531480 FOXO3O43524 673 aa20.32■□□□□ 0.84
CPSF1-206ENST00000531480 DDX17Q92841 729 aaKnown RBP20.32■□□□□ 0.84
CPSF1-206ENST00000531480 AKAP12Q02952 1782 aa20.31■□□□□ 0.84
CPSF1-206ENST00000531480 TMF1P82094 1093 aa20.3■□□□□ 0.84
CPSF1-206ENST00000531480 COL22A1Q8NFW1 1626 aaPredicted RBP20.29■□□□□ 0.84
CPSF1-206ENST00000531480 PMFBP1Q8TBY8 1022 aa20.29■□□□□ 0.84
CPSF1-206ENST00000531480 SBNO1A3KN83 1393 aa20.29■□□□□ 0.84
CPSF1-206ENST00000531480 LRRC59Q96AG4 307 aaKnown RBP20.28■□□□□ 0.84
CPSF1-206ENST00000531480 JCADQ9P266 1359 aa20.28■□□□□ 0.84
CPSF1-206ENST00000531480 NINLQ9Y2I6 1382 aa20.28■□□□□ 0.84
CPSF1-206ENST00000531480 ALS2Q96Q42 1657 aa20.28■□□□□ 0.84
CPSF1-206ENST00000531480 ACEP12821 1306 aa20.27■□□□□ 0.84
CPSF1-206ENST00000531480 CPSF1Q10570 1443 aaKnown RBP20.27■□□□□ 0.84
CPSF1-206ENST00000531480 CD163L1Q9NR16 1453 aa20.27■□□□□ 0.84
CPSF1-206ENST00000531480 CABP1Q9NZU7 370 aa20.27■□□□□ 0.84
CPSF1-206ENST00000531480 MYOM1P52179 1685 aa20.26■□□□□ 0.83
CPSF1-206ENST00000531480 BRD4O60885 1362 aaPredicted RBP20.26■□□□□ 0.83
CPSF1-206ENST00000531480 CDCA8Q53HL2 280 aa20.26■□□□□ 0.83
CPSF1-206ENST00000531480 KRT28Q7Z3Y7 464 aa20.26■□□□□ 0.83
CPSF1-206ENST00000531480 MON2Q7Z3U7 1717 aa20.26■□□□□ 0.83
CPSF1-206ENST00000531480 SSH2Q76I76 1423 aa20.25■□□□□ 0.83
CPSF1-206ENST00000531480 NRKQ7Z2Y5 1582 aa20.25■□□□□ 0.83
CPSF1-206ENST00000531480 SPATA31A3Q5VYP0 1347 aa20.25■□□□□ 0.83
CPSF1-206ENST00000531480 PNPLA6Q8IY17 1366 aa20.24■□□□□ 0.83
CPSF1-206ENST00000531480 PSME1Q06323 249 aa20.24■□□□□ 0.83
CPSF1-206ENST00000531480 NGDNQ8NEJ9 315 aaKnown RBP20.24■□□□□ 0.83
CPSF1-206ENST00000531480 TNS3Q68CZ2 1445 aa20.24■□□□□ 0.83
CPSF1-206ENST00000531480 USP6P35125 1406 aa20.23■□□□□ 0.83
CPSF1-206ENST00000531480 XPCQ01831 940 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms