RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	ADGRL3	Q9HAR2	1447 aa		13.22	□□□□□ -0.29
NXF1-209	ENST00000531474	NCOA3	Q9Y6Q9	1424 aa		13.22	□□□□□ -0.29
NXF1-209	ENST00000531474	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.21	□□□□□ -0.29
NXF1-209	ENST00000531474	XIRP1	Q702N8	1843 aa	Known RBP	13.21	□□□□□ -0.29
NXF1-209	ENST00000531474	USP47	Q96K76	1375 aa		13.2	□□□□□ -0.3
NXF1-209	ENST00000531474	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.2	□□□□□ -0.3
NXF1-209	ENST00000531474	NALCN	Q8IZF0	1738 aa		13.2	□□□□□ -0.3
NXF1-209	ENST00000531474	CENPB	P07199	599 aa	Predicted RBP	13.2	□□□□□ -0.3
NXF1-209	ENST00000531474	C19orf44	Q9H6X5	657 aa		13.2	□□□□□ -0.3
NXF1-209	ENST00000531474	ATF3	P18847	181 aa		13.19	□□□□□ -0.3
NXF1-209	ENST00000531474	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.19	□□□□□ -0.3
NXF1-209	ENST00000531474	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.19	□□□□□ -0.3
NXF1-209	ENST00000531474	UBAP1L	F5GYI3	381 aa		13.18	□□□□□ -0.3
NXF1-209	ENST00000531474	MIER1	Q8N108	512 aa		13.18	□□□□□ -0.3
NXF1-209	ENST00000531474	CDC42BPG	Q6DT37	1551 aa		13.17	□□□□□ -0.3
NXF1-209	ENST00000531474	DCC	P43146	1447 aa		13.17	□□□□□ -0.3
NXF1-209	ENST00000531474	CADPS2	Q86UW7	1296 aa		13.17	□□□□□ -0.3
NXF1-209	ENST00000531474	QRICH2	Q9H0J4	1663 aa		13.17	□□□□□ -0.3
NXF1-209	ENST00000531474	ADGRB2	O60241	1585 aa		13.15	□□□□□ -0.3
NXF1-209	ENST00000531474	ST20-MTHFS	A0A0A6YYL1	179 aa		13.15	□□□□□ -0.3
NXF1-209	ENST00000531474	TOM1	O60784	492 aa		13.15	□□□□□ -0.3
NXF1-209	ENST00000531474	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
NXF1-209	ENST00000531474	SCAF1	Q9H7N4	1312 aa	Known RBP	13.13	□□□□□ -0.31
NXF1-209	ENST00000531474	NUTM2F	A1L443	756 aa		13.13	□□□□□ -0.31
NXF1-209	ENST00000531474	WASL	O00401	505 aa	Predicted RBP	13.13	□□□□□ -0.31
NXF1-209	ENST00000531474	PIP4K2B	P78356	416 aa		13.13	□□□□□ -0.31
NXF1-209	ENST00000531474	MST1R	Q04912	1400 aa		13.13	□□□□□ -0.31
NXF1-209	ENST00000531474	SBNO2	Q9Y2G9	1366 aa		13.12	□□□□□ -0.31
NXF1-209	ENST00000531474	HSPA5	P11021	654 aa	Known RBP	13.12	□□□□□ -0.31
NXF1-209	ENST00000531474	SLAIN2	Q9P270	581 aa		13.12	□□□□□ -0.31
NXF1-209	ENST00000531474	TULP4	Q9NRJ4	1543 aa		13.12	□□□□□ -0.31
NXF1-209	ENST00000531474	EVC2	Q86UK5	1308 aa		13.12	□□□□□ -0.31
NXF1-209	ENST00000531474	FMN2	Q9NZ56	1722 aa		13.11	□□□□□ -0.31
NXF1-209	ENST00000531474	SRPK2	P78362	688 aa	Known RBP	13.11	□□□□□ -0.31
NXF1-209	ENST00000531474	CDK19	Q9BWU1	502 aa		13.11	□□□□□ -0.31
NXF1-209	ENST00000531474	C1orf167	Q5SNV9	1468 aa		13.1	□□□□□ -0.31
NXF1-209	ENST00000531474	TESK2	Q96S53	571 aa		13.1	□□□□□ -0.31
NXF1-209	ENST00000531474	ANKAR	Q7Z5J8	1434 aa		13.09	□□□□□ -0.31
NXF1-209	ENST00000531474	CABP2	Q9NPB3	220 aa		13.09	□□□□□ -0.31
NXF1-209	ENST00000531474	DDX10	Q13206	875 aa	Known RBP	13.08	□□□□□ -0.32
NXF1-209	ENST00000531474	ESCO1	Q5FWF5	840 aa		13.08	□□□□□ -0.32
NXF1-209	ENST00000531474	PRR36	Q9H6K5	1346 aa		13.08	□□□□□ -0.32
NXF1-209	ENST00000531474	SLC24A1	O60721	1099 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	TMF1	P82094	1093 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	BRINP3	Q76B58	766 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	FBXO41	Q8TF61	875 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	NUDT16	Q96DE0	195 aa	Known RBP	13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	ATP7B	P35670	1465 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	DISP3	Q9P2K9	1392 aa		13.07	□□□□□ -0.32
NXF1-209	ENST00000531474	USP32	Q8NFA0	1604 aa		13.06	□□□□□ -0.32
NXF1-209	ENST00000531474	ROBO1	Q9Y6N7	1651 aa		13.06	□□□□□ -0.32
NXF1-209	ENST00000531474	ORAI2	Q96SN7	254 aa		13.06	□□□□□ -0.32
NXF1-209	ENST00000531474	ANP32C	O43423	234 aa		13.04	□□□□□ -0.32
NXF1-209	ENST00000531474	KCNA4	P22459	653 aa		13.04	□□□□□ -0.32
NXF1-209	ENST00000531474	PHF8	Q9UPP1	1060 aa		13.04	□□□□□ -0.32
NXF1-209	ENST00000531474	CCDC61	Q9Y6R9	512 aa		13.04	□□□□□ -0.32
NXF1-209	ENST00000531474	ATAD2	Q6PL18	1390 aa		13.04	□□□□□ -0.32
NXF1-209	ENST00000531474	CDCA8	Q53HL2	280 aa		13.03	□□□□□ -0.32
NXF1-209	ENST00000531474	PMFBP1	Q8TBY8	1022 aa		13.03	□□□□□ -0.32
NXF1-209	ENST00000531474	POLR3GL	Q9BT43	218 aa		13.03	□□□□□ -0.32
NXF1-209	ENST00000531474	PPIP5K1	Q6PFW1	1433 aa		13.03	□□□□□ -0.32
NXF1-209	ENST00000531474	KIF1A	Q12756	1690 aa		13.02	□□□□□ -0.32
NXF1-209	ENST00000531474	DDX17	Q92841	729 aa	Known RBP	13.02	□□□□□ -0.33
NXF1-209	ENST00000531474	TOPAZ1	Q8N9V7	1692 aa		13.02	□□□□□ -0.33
NXF1-209	ENST00000531474	ITSN1	Q15811	1721 aa		13.02	□□□□□ -0.33
NXF1-209	ENST00000531474	CCER2	I3L3R5	266 aa		13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	FOXO3	O43524	673 aa		13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	NGDN	Q8NEJ9	315 aa	Known RBP	13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	TMC1	Q8TDI8	760 aa		13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	PUS7	Q96PZ0	661 aa	Known RBP	13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	RGPD8	O14715	1765 aa	Predicted RBP	13.01	□□□□□ -0.33
NXF1-209	ENST00000531474	NPHP3	Q7Z494	1330 aa		13	□□□□□ -0.33
NXF1-209	ENST00000531474	CABP1	Q9NZU7	370 aa		13	□□□□□ -0.33
NXF1-209	ENST00000531474	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.99	□□□□□ -0.33
NXF1-209	ENST00000531474	PLEKHG3	A1L390	1219 aa		12.99	□□□□□ -0.33
NXF1-209	ENST00000531474	HSPA1L	P34931	641 aa		12.99	□□□□□ -0.33
NXF1-209	ENST00000531474	XPC	Q01831	940 aa	Predicted RBP	12.99	□□□□□ -0.33
NXF1-209	ENST00000531474	NHSL1	Q5SYE7	1610 aa		12.99	□□□□□ -0.33
NXF1-209	ENST00000531474	ACE	P12821	1306 aa		12.98	□□□□□ -0.33
NXF1-209	ENST00000531474	C11orf95	C9JLR9	678 aa	Predicted RBP	12.98	□□□□□ -0.33
NXF1-209	ENST00000531474	PSME1	Q06323	249 aa		12.98	□□□□□ -0.33
NXF1-209	ENST00000531474	POLR3A	O14802	1390 aa	Predicted RBP	12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	NINL	Q9Y2I6	1382 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	PHLPP1	O60346	1717 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	KIF7	Q2M1P5	1343 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	KRT28	Q7Z3Y7	464 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	SLC12A5	Q9H2X9	1139 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	PXDN	Q92626	1479 aa		12.97	□□□□□ -0.33
NXF1-209	ENST00000531474	COL16A1	Q07092	1604 aa	Predicted RBP	12.95	□□□□□ -0.34
NXF1-209	ENST00000531474	SOS2	Q07890	1332 aa	Predicted RBP	12.95	□□□□□ -0.34
NXF1-209	ENST00000531474	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.95	□□□□□ -0.34
NXF1-209	ENST00000531474	ILDR1	Q86SU0	546 aa	Predicted RBP	12.95	□□□□□ -0.34
NXF1-209	ENST00000531474	TERF2IP	Q9NYB0	399 aa		12.95	□□□□□ -0.34
NXF1-209	ENST00000531474	CCDC7	Q96M83	1385 aa		12.94	□□□□□ -0.34
NXF1-209	ENST00000531474	WASHC2A	Q641Q2	1341 aa		12.94	□□□□□ -0.34
NXF1-209	ENST00000531474	PAK3	O75914	559 aa	Predicted RBP	12.94	□□□□□ -0.34
NXF1-209	ENST00000531474		A0A1W2PP64	1363 aa		12.94	□□□□□ -0.34
NXF1-209	ENST00000531474	KTN1	Q86UP2	1357 aa	Known RBP	12.94	□□□□□ -0.34
NXF1-209	ENST00000531474	MYOM1	P52179	1685 aa		12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	CD163L1	Q9NR16	1453 aa		12.93	□□□□□ -0.34

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