RNA–Protein interactions for RNA: ENST00000517138.1

SCARNA1-201, small Cajal body-specific RNA 1, humanhuman

BASIC

Gene SCARNA1, Length 166 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA1-201ENST00000517138 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
SCARNA1-201ENST00000517138 PCDHB15Q9Y5E8 787 aa12.3□□□□□ -0.44
SCARNA1-201ENST00000517138 RSBN1LQ6PCB5 846 aaPredicted RBP12.29□□□□□ -0.44
SCARNA1-201ENST00000517138 LIMD1Q9UGP4 676 aa12.28□□□□□ -0.44
SCARNA1-201ENST00000517138 Q3C1V9 767 aa12.27□□□□□ -0.45
SCARNA1-201ENST00000517138 EMID1Q96A84 441 aaPredicted RBP12.27□□□□□ -0.45
SCARNA1-201ENST00000517138 RIC3Q7Z5B4 369 aa12.26□□□□□ -0.45
SCARNA1-201ENST00000517138 USB1Q9BQ65 265 aaKnown RBP12.26□□□□□ -0.45
SCARNA1-201ENST00000517138 SPTLC1O15269 473 aa12.25□□□□□ -0.45
SCARNA1-201ENST00000517138 CSPP1Q1MSJ5 1256 aa12.25□□□□□ -0.45
SCARNA1-201ENST00000517138 PLA2G2CQ5R387 149 aa12.25□□□□□ -0.45
SCARNA1-201ENST00000517138 C6orf229H3BNL8 230 aa12.24□□□□□ -0.45
SCARNA1-201ENST00000517138 POLR3EQ9NVU0 708 aa12.24□□□□□ -0.45
SCARNA1-201ENST00000517138 GGCXP38435 758 aa12.23□□□□□ -0.45
SCARNA1-201ENST00000517138 MSS51Q4VC12 460 aa12.23□□□□□ -0.45
SCARNA1-201ENST00000517138 DIXDC1Q155Q3 683 aa12.22□□□□□ -0.45
SCARNA1-201ENST00000517138 CABLES1Q8TDN4 633 aa12.22□□□□□ -0.45
SCARNA1-201ENST00000517138 QPCTQ16769 361 aa12.21□□□□□ -0.45
SCARNA1-201ENST00000517138 IL27Q8NEV9 243 aa12.21□□□□□ -0.45
SCARNA1-201ENST00000517138 DDRGK1Q96HY6 314 aa12.21□□□□□ -0.45
SCARNA1-201ENST00000517138 PRKD2Q9BZL6 878 aa12.21□□□□□ -0.45
SCARNA1-201ENST00000517138 FBXO31Q5XUX0 539 aaPredicted RBP12.2□□□□□ -0.46
SCARNA1-201ENST00000517138 RETREG3Q86VR2 466 aa12.2□□□□□ -0.46
SCARNA1-201ENST00000517138 ANKLE1Q8NAG6 615 aa12.2□□□□□ -0.46
SCARNA1-201ENST00000517138 FCF1Q9Y324 198 aaKnown RBP12.2□□□□□ -0.46
SCARNA1-201ENST00000517138 HRCP23327 699 aa12.19□□□□□ -0.46
SCARNA1-201ENST00000517138 GJA5P36382 358 aa12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 CLK2P49760 499 aaKnown RBP12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 MMP16P51512 607 aa12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 MTMR2Q13614 643 aa12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 LIAT1Q6ZQX7 453 aa12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 PROCA1Q8NCQ7 364 aaPredicted RBP12.18□□□□□ -0.46
SCARNA1-201ENST00000517138 DXOO77932 396 aaKnown RBP12.17□□□□□ -0.46
SCARNA1-201ENST00000517138 CFAP99D6REC4 459 aa12.16□□□□□ -0.46
SCARNA1-201ENST00000517138 RGS20O76081 388 aa12.16□□□□□ -0.46
SCARNA1-201ENST00000517138 PRR7Q8TB68 274 aa12.16□□□□□ -0.46
SCARNA1-201ENST00000517138 RSPH6AQ9H0K4 717 aa12.16□□□□□ -0.46
SCARNA1-201ENST00000517138 SH3D19Q5HYK7 790 aa12.15□□□□□ -0.46
SCARNA1-201ENST00000517138 JUNDP17535 347 aa12.14□□□□□ -0.47
SCARNA1-201ENST00000517138 SKIV2LQ15477 1246 aaKnown RBP12.14□□□□□ -0.47
SCARNA1-201ENST00000517138 RTL5Q5HYW3 569 aaPredicted RBP12.14□□□□□ -0.47
SCARNA1-201ENST00000517138 LILRB3O75022 631 aa12.13□□□□□ -0.47
SCARNA1-201ENST00000517138 ZBTB3Q9H5J0 574 aa12.13□□□□□ -0.47
SCARNA1-201ENST00000517138 SLC19A1P41440 591 aa12.12□□□□□ -0.47
SCARNA1-201ENST00000517138 TUSC1Q2TAM9 212 aa12.11□□□□□ -0.47
SCARNA1-201ENST00000517138 PRPF38BQ5VTL8 546 aaKnown RBP12.11□□□□□ -0.47
SCARNA1-201ENST00000517138 NUTM2BA6NNL0 878 aaPredicted RBP12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 NUTM2EB1AL46 878 aaPredicted RBP12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 NUTM2DQ5VT03 806 aaPredicted RBP12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 NUTM2AQ8IVF1 878 aaPredicted RBP12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 CCDC24Q8N4L8 307 aa12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 V9GY48 417 aaPredicted RBP12.1□□□□□ -0.47
SCARNA1-201ENST00000517138 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.09□□□□□ -0.47
SCARNA1-201ENST00000517138 SPDYE5A6NIY4 337 aa12.08□□□□□ -0.48
SCARNA1-201ENST00000517138 SPRYD7Q5W111 196 aa12.08□□□□□ -0.48
SCARNA1-201ENST00000517138 PTCRAQ6ISU1 281 aaPredicted RBP12.07□□□□□ -0.48
SCARNA1-201ENST00000517138 PER1O15534 1290 aaPredicted RBP12.06□□□□□ -0.48
SCARNA1-201ENST00000517138 TSC1Q92574 1164 aa12.06□□□□□ -0.48
SCARNA1-201ENST00000517138 NUDT12Q9BQG2 462 aa12.06□□□□□ -0.48
SCARNA1-201ENST00000517138 ATP1B4Q9UN42 357 aaPredicted RBP12.06□□□□□ -0.48
SCARNA1-201ENST00000517138 DESI1Q6ICB0 168 aa12.04□□□□□ -0.48
SCARNA1-201ENST00000517138 TRIM67Q6ZTA4 783 aa12.03□□□□□ -0.48
SCARNA1-201ENST00000517138 CCNYL3P0C7X3 344 aa12.02□□□□□ -0.49
SCARNA1-201ENST00000517138 PTPRNQ16849 979 aa12.02□□□□□ -0.49
SCARNA1-201ENST00000517138 ZNF697Q5TEC3 545 aa12.02□□□□□ -0.49
SCARNA1-201ENST00000517138 LYPD8Q6UX82 237 aa12.02□□□□□ -0.49
SCARNA1-201ENST00000517138 ZNF598Q86UK7 904 aaKnown RBP12.02□□□□□ -0.49
SCARNA1-201ENST00000517138 RPIAP49247 311 aa12.01□□□□□ -0.49
SCARNA1-201ENST00000517138 CTDSPL2Q05D32 466 aa12□□□□□ -0.49
SCARNA1-201ENST00000517138 PPP2R2DQ66LE6 453 aa12□□□□□ -0.49
SCARNA1-201ENST00000517138 GOPCQ9HD26 462 aa12□□□□□ -0.49
SCARNA1-201ENST00000517138 EVA1BQ9NVM1 165 aa12□□□□□ -0.49
SCARNA1-201ENST00000517138 TRIM32Q13049 653 aa11.99□□□□□ -0.49
SCARNA1-201ENST00000517138 PCMTD1Q96MG8 357 aaPredicted RBP11.99□□□□□ -0.49
SCARNA1-201ENST00000517138 MAP10Q9P2G4 905 aa11.99□□□□□ -0.49
SCARNA1-201ENST00000517138 ZBTB24O43167 697 aaPredicted RBP11.98□□□□□ -0.49
SCARNA1-201ENST00000517138 IRX2Q9BZI1 471 aaPredicted RBP11.98□□□□□ -0.49
SCARNA1-201ENST00000517138 KCNH2Q12809 1159 aa11.97□□□□□ -0.49
SCARNA1-201ENST00000517138 TNFRSF10AO00220 468 aa11.96□□□□□ -0.49
SCARNA1-201ENST00000517138 F12P00748 615 aaPredicted RBP11.96□□□□□ -0.49
SCARNA1-201ENST00000517138 SKOR1P84550 965 aa11.96□□□□□ -0.49
SCARNA1-201ENST00000517138 PKD2L1Q9P0L9 805 aa11.96□□□□□ -0.49
SCARNA1-201ENST00000517138 GDF9O60383 454 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 CD2BP2O95400 341 aaKnown RBP11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 CTHP32929 405 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 RFC5P40937 340 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 FOXC1Q12948 553 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 LRRN4Q8WUT4 740 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 UNC93B1Q9H1C4 597 aa11.95□□□□□ -0.5
SCARNA1-201ENST00000517138 GFRA3O60609 400 aa11.94□□□□□ -0.5
SCARNA1-201ENST00000517138 HELBQ8NG08 1087 aaPredicted RBP11.94□□□□□ -0.5
SCARNA1-201ENST00000517138 PDZRN3Q9UPQ7 1066 aa11.94□□□□□ -0.5
SCARNA1-201ENST00000517138 AP1G2O75843 785 aa11.93□□□□□ -0.5
SCARNA1-201ENST00000517138 LINC01559Q495D7 138 aa11.92□□□□□ -0.5
SCARNA1-201ENST00000517138 BAP1Q92560 729 aa11.91□□□□□ -0.5
SCARNA1-201ENST00000517138 SH3BP2P78314 561 aa11.89□□□□□ -0.51
SCARNA1-201ENST00000517138 HMX1Q9NP08 348 aaPredicted RBP11.89□□□□□ -0.51
SCARNA1-201ENST00000517138 EPS8L1Q8TE68 723 aa11.88□□□□□ -0.51
SCARNA1-201ENST00000517138 USP17L8P0C7I0 530 aa11.87□□□□□ -0.51
SCARNA1-201ENST00000517138 PRR20EP86478 221 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms