RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 TECPR2O15040 1411 aa14.03□□□□□ -0.16
TOPBP1-209ENST00000513818 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.01□□□□□ -0.17
TOPBP1-209ENST00000513818 ABCC11Q96J66 1382 aa14.01□□□□□ -0.17
TOPBP1-209ENST00000513818 SAFB2Q14151 953 aaKnown RBP eCLIP14.01□□□□□ -0.17
TOPBP1-209ENST00000513818 WAPLQ7Z5K2 1190 aa14.01□□□□□ -0.17
TOPBP1-209ENST00000513818 DLC1Q96QB1 1528 aa14□□□□□ -0.17
TOPBP1-209ENST00000513818 C14orf37Q86TY3 774 aa14□□□□□ -0.17
TOPBP1-209ENST00000513818 PRAM1Q96QH2 718 aa13.99□□□□□ -0.17
TOPBP1-209ENST00000513818 ADGRL3Q9HAR2 1447 aa13.98□□□□□ -0.17
TOPBP1-209ENST00000513818 GPRASP1Q5JY77 1395 aa13.98□□□□□ -0.17
TOPBP1-209ENST00000513818 QRICH2Q9H0J4 1663 aa13.98□□□□□ -0.17
TOPBP1-209ENST00000513818 TIMELESSQ9UNS1 1208 aa13.97□□□□□ -0.17
TOPBP1-209ENST00000513818 IQSEC2Q5JU85 1478 aa13.97□□□□□ -0.17
TOPBP1-209ENST00000513818 FAM135BQ49AJ0 1406 aa13.97□□□□□ -0.17
TOPBP1-209ENST00000513818 CARD11Q9BXL7 1154 aa13.96□□□□□ -0.17
TOPBP1-209ENST00000513818 MSH6P52701 1360 aa13.96□□□□□ -0.18
TOPBP1-209ENST00000513818 POGKQ9P215 609 aa13.95□□□□□ -0.18
TOPBP1-209ENST00000513818 CDC42BPGQ6DT37 1551 aa13.95□□□□□ -0.18
TOPBP1-209ENST00000513818 MINK1Q8N4C8 1332 aaPredicted RBP13.94□□□□□ -0.18
TOPBP1-209ENST00000513818 HIRIP3Q9BW71 556 aaPredicted RBP13.94□□□□□ -0.18
TOPBP1-209ENST00000513818 FMN2Q9NZ56 1722 aa13.93□□□□□ -0.18
TOPBP1-209ENST00000513818 ADGRB2O60241 1585 aa13.93□□□□□ -0.18
TOPBP1-209ENST00000513818 UBAP1LF5GYI3 381 aa13.93□□□□□ -0.18
TOPBP1-209ENST00000513818 NCOA3Q9Y6Q9 1424 aa13.92□□□□□ -0.18
TOPBP1-209ENST00000513818 NUTM2FA1L443 756 aa13.91□□□□□ -0.18
TOPBP1-209ENST00000513818 USP47Q96K76 1375 aa13.91□□□□□ -0.18
TOPBP1-209ENST00000513818 CENPJQ9HC77 1338 aaPredicted RBP13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 MST1RQ04912 1400 aa13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 PIP4K2BP78356 416 aa13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 SIRT1Q96EB6 747 aa13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 C19orf44Q9H6X5 657 aa13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 EIF3AQ14152 1382 aaKnown RBP13.9□□□□□ -0.18
TOPBP1-209ENST00000513818 USP32Q8NFA0 1604 aa13.9□□□□□ -0.19
TOPBP1-209ENST00000513818 TULP4Q9NRJ4 1543 aa13.9□□□□□ -0.19
TOPBP1-209ENST00000513818 DCCP43146 1447 aa13.9□□□□□ -0.19
TOPBP1-209ENST00000513818 ROBO1Q9Y6N7 1651 aa13.89□□□□□ -0.19
TOPBP1-209ENST00000513818 ATF3P18847 181 aa13.89□□□□□ -0.19
TOPBP1-209ENST00000513818 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
TOPBP1-209ENST00000513818 TOM1O60784 492 aa13.86□□□□□ -0.19
TOPBP1-209ENST00000513818 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
TOPBP1-209ENST00000513818 C1orf167Q5SNV9 1468 aa13.86□□□□□ -0.19
TOPBP1-209ENST00000513818 ST20-MTHFSA0A0A6YYL1 179 aa13.85□□□□□ -0.19
TOPBP1-209ENST00000513818 ATP7BP35670 1465 aa13.84□□□□□ -0.19
TOPBP1-209ENST00000513818 PRR36Q9H6K5 1346 aa13.84□□□□□ -0.19
TOPBP1-209ENST00000513818 TOPAZ1Q8N9V7 1692 aa13.83□□□□□ -0.2
TOPBP1-209ENST00000513818 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
TOPBP1-209ENST00000513818 SLAIN2Q9P270 581 aa13.83□□□□□ -0.2
TOPBP1-209ENST00000513818 HSPA5P11021 654 aaKnown RBP13.82□□□□□ -0.2
TOPBP1-209ENST00000513818 FBXO41Q8TF61 875 aa13.82□□□□□ -0.2
TOPBP1-209ENST00000513818 ORAI2Q96SN7 254 aa13.82□□□□□ -0.2
TOPBP1-209ENST00000513818 CDK19Q9BWU1 502 aa13.82□□□□□ -0.2
TOPBP1-209ENST00000513818 CABP2Q9NPB3 220 aa13.82□□□□□ -0.2
TOPBP1-209ENST00000513818 ITSN1Q15811 1721 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 BRINP3Q76B58 766 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 DDX17Q92841 729 aaKnown RBP13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 TESK2Q96S53 571 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 NHSL1Q5SYE7 1610 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 DISP3Q9P2K9 1392 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 SBNO2Q9Y2G9 1366 aa13.81□□□□□ -0.2
TOPBP1-209ENST00000513818 KIF1AQ12756 1690 aa13.8□□□□□ -0.2
TOPBP1-209ENST00000513818 SRPK2P78362 688 aaKnown RBP13.8□□□□□ -0.2
TOPBP1-209ENST00000513818 PHLPP1O60346 1717 aa13.8□□□□□ -0.2
TOPBP1-209ENST00000513818 ANKARQ7Z5J8 1434 aa13.8□□□□□ -0.2
TOPBP1-209ENST00000513818 EIF4G2P78344 907 aaKnown RBP eCLIP13.79□□□□□ -0.2
TOPBP1-209ENST00000513818 ESCO1Q5FWF5 840 aa13.79□□□□□ -0.2
TOPBP1-209ENST00000513818 ILDR1Q86SU0 546 aaPredicted RBP13.78□□□□□ -0.2
TOPBP1-209ENST00000513818 PMFBP1Q8TBY8 1022 aa13.78□□□□□ -0.2
TOPBP1-209ENST00000513818 EVC2Q86UK5 1308 aa13.78□□□□□ -0.2
TOPBP1-209ENST00000513818 AHDC1Q5TGY3 1603 aaPredicted RBP13.78□□□□□ -0.2
TOPBP1-209ENST00000513818 COL16A1Q07092 1604 aaPredicted RBP13.77□□□□□ -0.21
TOPBP1-209ENST00000513818 NUDT16Q96DE0 195 aaKnown RBP13.77□□□□□ -0.21
TOPBP1-209ENST00000513818 PPIP5K1Q6PFW1 1433 aa13.76□□□□□ -0.21
TOPBP1-209ENST00000513818 HSPA1LP34931 641 aa13.76□□□□□ -0.21
TOPBP1-209ENST00000513818 XPCQ01831 940 aaPredicted RBP13.76□□□□□ -0.21
TOPBP1-209ENST00000513818 PHF8Q9UPP1 1060 aa13.75□□□□□ -0.21
TOPBP1-209ENST00000513818 POLR3GLQ9BT43 218 aa13.74□□□□□ -0.21
TOPBP1-209ENST00000513818 MYOM1P52179 1685 aa13.74□□□□□ -0.21
TOPBP1-209ENST00000513818 FOXO3O43524 673 aa13.73□□□□□ -0.21
TOPBP1-209ENST00000513818 ZEB1P37275 1124 aaPredicted RBP13.73□□□□□ -0.21
TOPBP1-209ENST00000513818 TMF1P82094 1093 aa13.73□□□□□ -0.21
TOPBP1-209ENST00000513818 PXDNQ92626 1479 aa13.73□□□□□ -0.21
TOPBP1-209ENST00000513818 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.21
TOPBP1-209ENST00000513818 AKAP12Q02952 1782 aa13.71□□□□□ -0.21
TOPBP1-209ENST00000513818 TRPM3Q9HCF6 1732 aaPredicted RBP13.71□□□□□ -0.21
TOPBP1-209ENST00000513818 CABP1Q9NZU7 370 aa13.71□□□□□ -0.21
TOPBP1-209ENST00000513818 CCDC61Q9Y6R9 512 aa13.71□□□□□ -0.21
TOPBP1-209ENST00000513818 NPHP3Q7Z494 1330 aa13.7□□□□□ -0.22
TOPBP1-209ENST00000513818 C11orf95C9JLR9 678 aaPredicted RBP13.7□□□□□ -0.22
TOPBP1-209ENST00000513818 NGDNQ8NEJ9 315 aaKnown RBP13.7□□□□□ -0.22
TOPBP1-209ENST00000513818 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
TOPBP1-209ENST00000513818 ACEP12821 1306 aa13.69□□□□□ -0.22
TOPBP1-209ENST00000513818 CD163L1Q9NR16 1453 aa13.69□□□□□ -0.22
TOPBP1-209ENST00000513818 NRKQ7Z2Y5 1582 aa13.69□□□□□ -0.22
TOPBP1-209ENST00000513818 MON2Q7Z3U7 1717 aa13.69□□□□□ -0.22
TOPBP1-209ENST00000513818 PLEKHG5O94827 1062 aa13.68□□□□□ -0.22
TOPBP1-209ENST00000513818 SLC12A5Q9H2X9 1139 aa13.68□□□□□ -0.22
TOPBP1-209ENST00000513818 POLR3AO14802 1390 aaPredicted RBP13.68□□□□□ -0.22
TOPBP1-209ENST00000513818 SOS2Q07890 1332 aaPredicted RBP13.67□□□□□ -0.22
TOPBP1-209ENST00000513818 PLEKHG3A1L390 1219 aa13.67□□□□□ -0.22
TOPBP1-209ENST00000513818 KRT28Q7Z3Y7 464 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms