RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 SMC5Q8IY18 1101 aa16.24■□□□□ 0.19
GAPVD1-220ENST00000497580 IQGAP2Q13576 1575 aa16.24■□□□□ 0.19
GAPVD1-220ENST00000497580 MVPQ14764 893 aaKnown RBP16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 GAS2L2Q8NHY3 880 aa16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 DZIP1LQ8IYY4 767 aaKnown RBP16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 SMC4Q9NTJ3 1288 aa16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 BAG4O95429 457 aaKnown RBP16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 BBXQ8WY36 941 aaPredicted RBP16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 CIZ1Q9ULV3 898 aaPredicted RBP16.23■□□□□ 0.19
GAPVD1-220ENST00000497580 PTMSP20962 102 aa16.22■□□□□ 0.19
GAPVD1-220ENST00000497580 VIRMAQ69YN4 1812 aaKnown RBP16.22■□□□□ 0.19
GAPVD1-220ENST00000497580 PRIM1P49642 420 aaKnown RBP16.22■□□□□ 0.19
GAPVD1-220ENST00000497580 ZKSCAN2Q63HK3 967 aa16.22■□□□□ 0.19
GAPVD1-220ENST00000497580 TCP11L2Q8N4U5 519 aa16.22■□□□□ 0.19
GAPVD1-220ENST00000497580 IGSF3O75054 1194 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 NOL7Q9UMY1 257 aaKnown RBP16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 NINLQ9Y2I6 1382 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 K7ELQ4 463 aaPredicted RBP16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 KLHL40Q2TBA0 621 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 ZSCAN23Q3MJ62 389 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 RTEL1-TNFRSF6BF6WH68 1400 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 DYNC1I1O14576 645 aa16.21■□□□□ 0.19
GAPVD1-220ENST00000497580 TSR2Q969E8 191 aaKnown RBP16.2■□□□□ 0.18
GAPVD1-220ENST00000497580 CHAMP1Q96JM3 812 aa16.2■□□□□ 0.18
GAPVD1-220ENST00000497580 NUP153P49790 1475 aaKnown RBP16.2■□□□□ 0.18
GAPVD1-220ENST00000497580 PRPF40AO75400 957 aaKnown RBP16.2■□□□□ 0.18
GAPVD1-220ENST00000497580 PDE4CQ08493 712 aa16.2■□□□□ 0.18
GAPVD1-220ENST00000497580 SASS6Q6UVJ0 657 aa16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 ZKSCAN5Q9Y2L8 839 aa16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 DDIT3P35638 169 aa16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 CSPP1Q1MSJ5 1256 aa16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 MTERF4Q7Z6M4 381 aaKnown RBP16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 C9orf84Q5VXU9 1444 aa16.19■□□□□ 0.18
GAPVD1-220ENST00000497580 CDCA8Q53HL2 280 aa16.18■□□□□ 0.18
GAPVD1-220ENST00000497580 TERF1P54274 439 aa16.18■□□□□ 0.18
GAPVD1-220ENST00000497580 SNX21Q969T3 373 aa16.18■□□□□ 0.18
GAPVD1-220ENST00000497580 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.18■□□□□ 0.18
GAPVD1-220ENST00000497580 TROQ12816 1431 aaPredicted RBP16.17■□□□□ 0.18
GAPVD1-220ENST00000497580 SYCE3A1L190 88 aa16.17■□□□□ 0.18
GAPVD1-220ENST00000497580 CCDC94Q9BW85 323 aaPredicted RBP16.17■□□□□ 0.18
GAPVD1-220ENST00000497580 SPDYE4A6NLX3 237 aa16.17■□□□□ 0.18
GAPVD1-220ENST00000497580 FOXD4L6Q3SYB3 417 aaPredicted RBP16.16■□□□□ 0.18
GAPVD1-220ENST00000497580 ANKRD45Q5TZF3 282 aa16.16■□□□□ 0.18
GAPVD1-220ENST00000497580 FOXD4L3Q6VB84 417 aaPredicted RBP16.16■□□□□ 0.18
GAPVD1-220ENST00000497580 ZNF500O60304 480 aaPredicted RBP16.16■□□□□ 0.18
GAPVD1-220ENST00000497580 PKP1Q13835 747 aa16.16■□□□□ 0.18
GAPVD1-220ENST00000497580 GPATCH8Q9UKJ3 1502 aaKnown RBP16.15■□□□□ 0.18
GAPVD1-220ENST00000497580 RBM25P49756 843 aaKnown RBP16.15■□□□□ 0.18
GAPVD1-220ENST00000497580 ZNF830Q96NB3 372 aaPredicted RBP16.15■□□□□ 0.18
GAPVD1-220ENST00000497580 DMTNQ08495 405 aa16.15■□□□□ 0.18
GAPVD1-220ENST00000497580 MAPK8IP2Q13387 824 aaPredicted RBP16.14■□□□□ 0.17
GAPVD1-220ENST00000497580 MORC1Q86VD1 984 aa16.14■□□□□ 0.17
GAPVD1-220ENST00000497580 PLCB2Q00722 1185 aa16.14■□□□□ 0.17
GAPVD1-220ENST00000497580 CCDC39Q9UFE4 941 aa16.14■□□□□ 0.17
GAPVD1-220ENST00000497580 TRIM27P14373 513 aa16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 SAFB2Q14151 953 aaKnown RBP eCLIP16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 C17orf53Q8N3J3 647 aaPredicted RBP16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 C1orf115Q9H7X2 142 aa16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 A2MP01023 1474 aa16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 RUNDC1Q96C34 613 aa16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 WDR7Q9Y4E6 1490 aa16.13■□□□□ 0.17
GAPVD1-220ENST00000497580 ZSCAN20P17040 1043 aaPredicted RBP16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 PPP4R3BQ5MIZ7 849 aa16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 NUTM2DQ5VT03 806 aaPredicted RBP16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 KDM5DQ9BY66 1539 aa16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 PIK3C2GO75747 1445 aa16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 GPRASP1Q5JY77 1395 aa16.12■□□□□ 0.17
GAPVD1-220ENST00000497580 U2AF1L5P0DN76 240 aaPredicted RBP16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 U2AF1Q01081 240 aaKnown RBP eCLIP16.11■□□□□ 0.172e-9■□□□□ 11.3
GAPVD1-220ENST00000497580 EXOSC9Q06265 439 aaKnown RBP16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 TMEM57Q8N5G2 664 aa16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 DDX19BQ9UMR2 479 aa16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 NCOA3Q9Y6Q9 1424 aa16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 ZNF445P59923 1031 aa16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 KIAA2012Q0VF49 1180 aa16.11■□□□□ 0.17
GAPVD1-220ENST00000497580 KIF2CQ99661 725 aa16.1■□□□□ 0.17
GAPVD1-220ENST00000497580 HS1BP3Q53T59 392 aa16.1■□□□□ 0.17
GAPVD1-220ENST00000497580 NOB1Q9ULX3 412 aaKnown RBP16.1■□□□□ 0.17
GAPVD1-220ENST00000497580 TBC1D9Q6ZT07 1266 aa16.1■□□□□ 0.17
GAPVD1-220ENST00000497580 ASXL1Q8IXJ9 1541 aa16.1■□□□□ 0.17
GAPVD1-220ENST00000497580 VGLL3A8MV65 326 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 CHD1LQ86WJ1 897 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 LMBRD1Q9NUN5 540 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 TRPM1Q7Z4N2 1603 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 SSH1Q8WYL5 1049 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 KIF16BQ96L93 1317 aa16.09■□□□□ 0.17
GAPVD1-220ENST00000497580 BCL11BQ9C0K0 894 aaPredicted RBP16.08■□□□□ 0.17
GAPVD1-220ENST00000497580 CHMP4BQ9H444 224 aaKnown RBP16.08■□□□□ 0.17
GAPVD1-220ENST00000497580 ADGRL2O95490 1459 aa16.08■□□□□ 0.17
GAPVD1-220ENST00000497580 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.08■□□□□ 0.16
GAPVD1-220ENST00000497580 CEP170Q5SW79 1584 aa16.08■□□□□ 0.16
GAPVD1-220ENST00000497580 CARD14Q9BXL6 1004 aa16.08■□□□□ 0.16
GAPVD1-220ENST00000497580 ZMYM3Q14202 1370 aa16.08■□□□□ 0.16
GAPVD1-220ENST00000497580 FAM135AQ9P2D6 1515 aa16.07■□□□□ 0.16
GAPVD1-220ENST00000497580 NGEFQ8N5V2 710 aa16.07■□□□□ 0.16
GAPVD1-220ENST00000497580 PDLIM2Q96JY6 352 aa16.07■□□□□ 0.16
GAPVD1-220ENST00000497580 HDAC1Q13547 482 aaPredicted RBP16.07■□□□□ 0.16
GAPVD1-220ENST00000497580 ATP2B3Q16720 1220 aa16.07■□□□□ 0.16
GAPVD1-220ENST00000497580 NOL8Q76FK4 1167 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms