RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 ATF3P18847 181 aa13.45□□□□□ -0.26
BRCA1-219ENST00000491747 CADPS2Q86UW7 1296 aa13.44□□□□□ -0.26
BRCA1-219ENST00000491747 MST1RQ04912 1400 aa13.43□□□□□ -0.26
BRCA1-219ENST00000491747 NBPF1Q3BBV0 1214 aa13.43□□□□□ -0.26
BRCA1-219ENST00000491747 DLC1Q96QB1 1528 aa13.42□□□□□ -0.26
BRCA1-219ENST00000491747 ARHGEF28Q8N1W1 1705 aaKnown RBP13.42□□□□□ -0.26
BRCA1-219ENST00000491747 SIRT1Q96EB6 747 aa13.42□□□□□ -0.26
BRCA1-219ENST00000491747 TRAK1Q9UPV9 953 aa13.42□□□□□ -0.26
BRCA1-219ENST00000491747 TRPM1Q7Z4N2 1603 aa13.42□□□□□ -0.26
BRCA1-219ENST00000491747 PHLPP1O60346 1717 aa13.41□□□□□ -0.26
BRCA1-219ENST00000491747 CDC42BPGQ6DT37 1551 aa13.41□□□□□ -0.26
BRCA1-219ENST00000491747 PRAM1Q96QH2 718 aa13.4□□□□□ -0.26
BRCA1-219ENST00000491747 SAFB2Q14151 953 aaKnown RBP eCLIP13.4□□□□□ -0.261e-6■□□□□ 10.7
BRCA1-219ENST00000491747 BRINP3Q76B58 766 aa13.39□□□□□ -0.27
BRCA1-219ENST00000491747 RGPD8O14715 1765 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-219ENST00000491747 FMN2Q9NZ56 1722 aa13.39□□□□□ -0.27
BRCA1-219ENST00000491747 NBPF8Q3BBV2 869 aa13.39□□□□□ -0.27
BRCA1-219ENST00000491747 C1orf167Q5SNV9 1468 aa13.39□□□□□ -0.27
BRCA1-219ENST00000491747 COL16A1Q07092 1604 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-219ENST00000491747 NHSL1Q5SYE7 1610 aa13.37□□□□□ -0.27
BRCA1-219ENST00000491747 TONSLQ96HA7 1378 aa13.37□□□□□ -0.27
BRCA1-219ENST00000491747 AHDC1Q5TGY3 1603 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-219ENST00000491747 POGKQ9P215 609 aa13.37□□□□□ -0.27
BRCA1-219ENST00000491747 ORAI2Q96SN7 254 aa13.36□□□□□ -0.27
BRCA1-219ENST00000491747 NUTM2FA1L443 756 aa13.36□□□□□ -0.27
BRCA1-219ENST00000491747 DDX17Q92841 729 aaKnown RBP13.36□□□□□ -0.27
BRCA1-219ENST00000491747 ADGRB2O60241 1585 aa13.35□□□□□ -0.27
BRCA1-219ENST00000491747 USP32Q8NFA0 1604 aa13.34□□□□□ -0.27
BRCA1-219ENST00000491747 HIRIP3Q9BW71 556 aaPredicted RBP13.34□□□□□ -0.27
BRCA1-219ENST00000491747 MINK1Q8N4C8 1332 aaPredicted RBP13.34□□□□□ -0.27
BRCA1-219ENST00000491747 MYT1Q01538 1121 aa13.34□□□□□ -0.27
BRCA1-219ENST00000491747 QRICH2Q9H0J4 1663 aa13.32□□□□□ -0.28
BRCA1-219ENST00000491747 ESCO1Q5FWF5 840 aa13.31□□□□□ -0.28
BRCA1-219ENST00000491747 ROCK2O75116 1388 aaKnown RBP13.31□□□□□ -0.28
BRCA1-219ENST00000491747 CLSPNQ9HAW4 1339 aa13.31□□□□□ -0.28
BRCA1-219ENST00000491747 MED1Q15648 1581 aaPredicted RBP13.31□□□□□ -0.28
BRCA1-219ENST00000491747 RALGAPBQ86X10 1494 aa13.3□□□□□ -0.28
BRCA1-219ENST00000491747 GPRASP1Q5JY77 1395 aa13.29□□□□□ -0.28
BRCA1-219ENST00000491747 SHPRHQ149N8 1683 aa13.29□□□□□ -0.28
BRCA1-219ENST00000491747 WASLO00401 505 aaPredicted RBP13.29□□□□□ -0.28
BRCA1-219ENST00000491747 PRR36Q9H6K5 1346 aa13.29□□□□□ -0.28
BRCA1-219ENST00000491747 KIF1AQ12756 1690 aa13.28□□□□□ -0.28
BRCA1-219ENST00000491747 TULP4Q9NRJ4 1543 aa13.28□□□□□ -0.28
BRCA1-219ENST00000491747 CENPJQ9HC77 1338 aaPredicted RBP13.27□□□□□ -0.28
BRCA1-219ENST00000491747 FOXO3O43524 673 aa13.27□□□□□ -0.29
BRCA1-219ENST00000491747 PXDNQ92626 1479 aa13.27□□□□□ -0.29
BRCA1-219ENST00000491747 JCADQ9P266 1359 aa13.27□□□□□ -0.29
BRCA1-219ENST00000491747 SOS2Q07890 1332 aaPredicted RBP13.27□□□□□ -0.29
BRCA1-219ENST00000491747 ANKARQ7Z5J8 1434 aa13.26□□□□□ -0.29
BRCA1-219ENST00000491747 XPCQ01831 940 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-219ENST00000491747 YTHDC1Q96MU7 727 aaKnown RBP13.26□□□□□ -0.29
BRCA1-219ENST00000491747 CDK19Q9BWU1 502 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 MIER1Q8N108 512 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 PHF8Q9UPP1 1060 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 ATP7BP35670 1465 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 TOPAZ1Q8N9V7 1692 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 ITSN1Q15811 1721 aa13.25□□□□□ -0.29
BRCA1-219ENST00000491747 PMFBP1Q8TBY8 1022 aa13.24□□□□□ -0.29
BRCA1-219ENST00000491747 DISP3Q9P2K9 1392 aa13.24□□□□□ -0.29
BRCA1-219ENST00000491747 LRP6O75581 1613 aa13.24□□□□□ -0.29
BRCA1-219ENST00000491747 LRRC59Q96AG4 307 aaKnown RBP13.24□□□□□ -0.29
BRCA1-219ENST00000491747 NPHP3Q7Z494 1330 aa13.23□□□□□ -0.29
BRCA1-219ENST00000491747 TIMELESSQ9UNS1 1208 aa13.23□□□□□ -0.29
BRCA1-219ENST00000491747 NUDT16Q96DE0 195 aaKnown RBP13.23□□□□□ -0.29
BRCA1-219ENST00000491747 PNPLA6Q8IY17 1366 aa13.23□□□□□ -0.29
BRCA1-219ENST00000491747 EIF3AQ14152 1382 aaKnown RBP13.22□□□□□ -0.29
BRCA1-219ENST00000491747 KRT28Q7Z3Y7 464 aa13.21□□□□□ -0.29
BRCA1-219ENST00000491747 CABP2Q9NPB3 220 aa13.21□□□□□ -0.29
BRCA1-219ENST00000491747 TRPM3Q9HCF6 1732 aaPredicted RBP13.21□□□□□ -0.29
BRCA1-219ENST00000491747 COL22A1Q8NFW1 1626 aaPredicted RBP13.21□□□□□ -0.29
BRCA1-219ENST00000491747 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
BRCA1-219ENST00000491747 NUTM2BA6NNL0 878 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-219ENST00000491747 NUTM2EB1AL46 878 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-219ENST00000491747 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
BRCA1-219ENST00000491747 NUTM2AQ8IVF1 878 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-219ENST00000491747 RGS17Q9UGC6 210 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-219ENST00000491747 SPATA31A3Q5VYP0 1347 aa13.18□□□□□ -0.3
BRCA1-219ENST00000491747 ALS2Q96Q42 1657 aa13.17□□□□□ -0.3
BRCA1-219ENST00000491747 PSME1Q06323 249 aa13.17□□□□□ -0.3
BRCA1-219ENST00000491747 CCDC61Q9Y6R9 512 aa13.17□□□□□ -0.3
BRCA1-219ENST00000491747 EVC2Q86UK5 1308 aa13.17□□□□□ -0.3
BRCA1-219ENST00000491747 SBNO2Q9Y2G9 1366 aa13.17□□□□□ -0.3
BRCA1-219ENST00000491747 ST20-MTHFSA0A0A6YYL1 179 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 PPIP5K1Q6PFW1 1433 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 PLEKHG3A1L390 1219 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 ILDR2Q71H61 639 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 NGDNQ8NEJ9 315 aaKnown RBP13.16□□□□□ -0.3
BRCA1-219ENST00000491747 ACEP12821 1306 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 TNS3Q68CZ2 1445 aa13.16□□□□□ -0.3
BRCA1-219ENST00000491747 MARF1Q9Y4F3 1742 aaKnown RBP13.15□□□□□ -0.3
BRCA1-219ENST00000491747 TESK2Q96S53 571 aa13.15□□□□□ -0.3
BRCA1-219ENST00000491747 SBNO1A3KN83 1393 aa13.15□□□□□ -0.3
BRCA1-219ENST00000491747 POLR3AO14802 1390 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-219ENST00000491747 ABCA3Q99758 1704 aa13.15□□□□□ -0.3
BRCA1-219ENST00000491747 PHF23Q9BUL5 403 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-219ENST00000491747 USP47Q96K76 1375 aa13.14□□□□□ -0.31
BRCA1-219ENST00000491747 CABP1Q9NZU7 370 aa13.14□□□□□ -0.31
BRCA1-219ENST00000491747 AKAP12Q02952 1782 aa13.13□□□□□ -0.31
BRCA1-219ENST00000491747 CRYBG1Q9Y4K1 1723 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms