RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 ABCC10Q5T3U5 1492 aa20.22■□□□□ 0.83
MCF2L-229ENST00000488765 PDIA4P13667 645 aaKnown RBP20.21■□□□□ 0.83
MCF2L-229ENST00000488765 MCTP1Q6DN14 999 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 PLEKHH2Q8IVE3 1493 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 RBSNQ9H1K0 784 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 KNSTRNQ9Y448 316 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 ABCA8O94911 1581 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 DMTNQ08495 405 aa20.21■□□□□ 0.83
MCF2L-229ENST00000488765 NPM1P06748 294 aaKnown RBP eCLIP20.2■□□□□ 0.82
MCF2L-229ENST00000488765 TNNT2P45379 298 aaPredicted RBP20.2■□□□□ 0.82
MCF2L-229ENST00000488765 EIF3AQ14152 1382 aaKnown RBP20.2■□□□□ 0.82
MCF2L-229ENST00000488765 PPP1R9BQ96SB3 815 aa20.2■□□□□ 0.82
MCF2L-229ENST00000488765 CCDC144AA2RUR9 1427 aa20.2■□□□□ 0.82
MCF2L-229ENST00000488765 BLMP54132 1417 aaPredicted RBP20.19■□□□□ 0.82
MCF2L-229ENST00000488765 NUTM2DQ5VT03 806 aaPredicted RBP20.19■□□□□ 0.82
MCF2L-229ENST00000488765 ZNF830Q96NB3 372 aaPredicted RBP20.19■□□□□ 0.82
MCF2L-229ENST00000488765 GGT6Q6P531 493 aa20.19■□□□□ 0.82
MCF2L-229ENST00000488765 DISP3Q9P2K9 1392 aa20.19■□□□□ 0.82
MCF2L-229ENST00000488765 C17orf53Q8N3J3 647 aaPredicted RBP20.19■□□□□ 0.82
MCF2L-229ENST00000488765 SYCP2Q9BX26 1530 aa20.18■□□□□ 0.82
MCF2L-229ENST00000488765 PRIM1P49642 420 aaKnown RBP20.18■□□□□ 0.82
MCF2L-229ENST00000488765 KDM5CP41229 1560 aa20.17■□□□□ 0.82
MCF2L-229ENST00000488765 RSPH4AQ5TD94 716 aa20.17■□□□□ 0.82
MCF2L-229ENST00000488765 PTMAP06454 111 aaKnown RBP20.17■□□□□ 0.82
MCF2L-229ENST00000488765 ZNF521Q96K83 1311 aa20.17■□□□□ 0.82
MCF2L-229ENST00000488765 ZMYM4Q5VZL5 1548 aa20.16■□□□□ 0.82
MCF2L-229ENST00000488765 CHD1O14646 1710 aa20.16■□□□□ 0.82
MCF2L-229ENST00000488765 PMFBP1Q8TBY8 1022 aa20.16■□□□□ 0.82
MCF2L-229ENST00000488765 CCDC94Q9BW85 323 aaPredicted RBP20.16■□□□□ 0.82
MCF2L-229ENST00000488765 CGNQ9P2M7 1197 aaKnown RBP20.16■□□□□ 0.82
MCF2L-229ENST00000488765 MBD5Q9P267 1494 aa20.16■□□□□ 0.82
MCF2L-229ENST00000488765 ATP2B3Q16720 1220 aa20.15■□□□□ 0.82
MCF2L-229ENST00000488765 NOL7Q9UMY1 257 aaKnown RBP20.15■□□□□ 0.82
MCF2L-229ENST00000488765 CCDC141Q6ZP82 1450 aa20.15■□□□□ 0.82
MCF2L-229ENST00000488765 ISY1Q9ULR0 285 aaKnown RBP20.14■□□□□ 0.82
MCF2L-229ENST00000488765 RWDD1Q9H446 243 aaPredicted RBP20.14■□□□□ 0.81
MCF2L-229ENST00000488765 DYNC1I1O14576 645 aa20.14■□□□□ 0.81
MCF2L-229ENST00000488765 POLR1AO95602 1720 aaPredicted RBP20.13■□□□□ 0.81
MCF2L-229ENST00000488765 RAB3GAP1Q15042 981 aa20.13■□□□□ 0.81
MCF2L-229ENST00000488765 CDC42BPAQ5VT25 1732 aa20.13■□□□□ 0.81
MCF2L-229ENST00000488765 SKOR2Q2VWA4 1001 aaPredicted RBP20.13■□□□□ 0.81
MCF2L-229ENST00000488765 ITSN2Q9NZM3 1697 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 GOLGA6L22H0YM25 854 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 PKP1Q13835 747 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 PDE3AQ14432 1141 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 FOXD4L6Q3SYB3 417 aaPredicted RBP20.12■□□□□ 0.81
MCF2L-229ENST00000488765 FOXD4L3Q6VB84 417 aaPredicted RBP20.12■□□□□ 0.81
MCF2L-229ENST00000488765 TRAPPC8Q9Y2L5 1435 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 GAS2L2Q8NHY3 880 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 E9PSI1 815 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 LNPKQ9C0E8 428 aa20.12■□□□□ 0.81
MCF2L-229ENST00000488765 ZSCAN23Q3MJ62 389 aa20.11■□□□□ 0.81
MCF2L-229ENST00000488765 PAXIP1Q6ZW49 1069 aaPredicted RBP20.11■□□□□ 0.81
MCF2L-229ENST00000488765 PRPF40AO75400 957 aaKnown RBP20.1■□□□□ 0.81
MCF2L-229ENST00000488765 BAG4O95429 457 aaKnown RBP20.09■□□□□ 0.81
MCF2L-229ENST00000488765 SASS6Q6UVJ0 657 aa20.09■□□□□ 0.81
MCF2L-229ENST00000488765 TMEM51Q9NW97 253 aa20.09■□□□□ 0.81
MCF2L-229ENST00000488765 ZKSCAN5Q9Y2L8 839 aa20.09■□□□□ 0.81
MCF2L-229ENST00000488765 SCAPERQ9BY12 1400 aa20.09■□□□□ 0.81
MCF2L-229ENST00000488765 NKTRP30414 1462 aaKnown RBP20.09■□□□□ 0.81
MCF2L-229ENST00000488765 CHMP4AQ9BY43 222 aa20.08■□□□□ 0.81
MCF2L-229ENST00000488765 SYCE3A1L190 88 aa20.08■□□□□ 0.8
MCF2L-229ENST00000488765 FTSJ3Q8IY81 847 aaKnown RBP20.08■□□□□ 0.8
MCF2L-229ENST00000488765 ADGRL2O95490 1459 aa20.07■□□□□ 0.8
MCF2L-229ENST00000488765 ZNF710Q8N1W2 664 aa20.07■□□□□ 0.8
MCF2L-229ENST00000488765 TTC37Q6PGP7 1564 aa20.07■□□□□ 0.8
MCF2L-229ENST00000488765 ZNF500O60304 480 aaPredicted RBP20.06■□□□□ 0.8
MCF2L-229ENST00000488765 RARSP54136 660 aaKnown RBP20.06■□□□□ 0.8
MCF2L-229ENST00000488765 TRMT2AQ8IZ69 625 aaKnown RBP20.06■□□□□ 0.8
MCF2L-229ENST00000488765 TESK2Q96S53 571 aa20.06■□□□□ 0.8
MCF2L-229ENST00000488765 SAMD9LQ8IVG5 1584 aa20.06■□□□□ 0.8
MCF2L-229ENST00000488765 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.06■□□□□ 0.8
MCF2L-229ENST00000488765 DDIT3P35638 169 aa20.06■□□□□ 0.8
MCF2L-229ENST00000488765 TMF1P82094 1093 aa20.06■□□□□ 0.8
MCF2L-229ENST00000488765 OSCARQ8IYS5 282 aa20.06■□□□□ 0.8
MCF2L-229ENST00000488765 CYB5RLQ6IPT4 315 aa20.05■□□□□ 0.8
MCF2L-229ENST00000488765 ARHGEF12Q9NZN5 1544 aa20.05■□□□□ 0.8
MCF2L-229ENST00000488765 PLCB2Q00722 1185 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 KLHL40Q2TBA0 621 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 WWC1Q8IX03 1113 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 RAPGEF3O95398 923 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 TERF1P54274 439 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 ITPRIPQ8IWB1 547 aa20.04■□□□□ 0.8
MCF2L-229ENST00000488765 NSFL1CQ9UNZ2 370 aaKnown RBP20.04■□□□□ 0.8
MCF2L-229ENST00000488765 U2AF2P26368 475 aaKnown RBP eCLIP20.03■□□□□ 0.8
MCF2L-229ENST00000488765 ZNF771Q7L3S4 317 aaPredicted RBP20.03■□□□□ 0.8
MCF2L-229ENST00000488765 SMC5Q8IY18 1101 aa20.03■□□□□ 0.8
MCF2L-229ENST00000488765 FAM135AQ9P2D6 1515 aa20.03■□□□□ 0.8
MCF2L-229ENST00000488765 SAFB2Q14151 953 aaKnown RBP eCLIP20.02■□□□□ 0.8
MCF2L-229ENST00000488765 MTERF4Q7Z6M4 381 aaKnown RBP20.02■□□□□ 0.8
MCF2L-229ENST00000488765 UTP14CQ5TAP6 766 aaKnown RBP20.02■□□□□ 0.8
MCF2L-229ENST00000488765 RALGAPBQ86X10 1494 aa20.01■□□□□ 0.79
MCF2L-229ENST00000488765 RTEL1-TNFRSF6BF6WH68 1400 aa20.01■□□□□ 0.79
MCF2L-229ENST00000488765 CDK11BP21127 795 aaKnown RBP20.01■□□□□ 0.79
MCF2L-229ENST00000488765 CFAP70Q5T0N1 1121 aa20.01■□□□□ 0.79
MCF2L-229ENST00000488765 CSPP1Q1MSJ5 1256 aa20■□□□□ 0.79
MCF2L-229ENST00000488765 CERS3Q8IU89 383 aa20■□□□□ 0.79
MCF2L-229ENST00000488765 TTC12Q9H892 705 aaPredicted RBP20■□□□□ 0.79
MCF2L-229ENST00000488765 TRERF1Q96PN7 1200 aa20■□□□□ 0.79
MCF2L-229ENST00000488765 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms