RNA–Protein interactions for RNA: ENST00000481570.5

COL1A2-208, Transcript of collagen type I alpha 2 chain, human

TSL 2

Gene COL1A2, Length 5,993 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL1A2-208	ENST00000481570	TSR1	Q2NL82	804 aa	Known RBP	13.91	□□□□□ -0.18
COL1A2-208	ENST00000481570	GOLGA6L1	Q8N7Z2	621 aa		13.91	□□□□□ -0.18
COL1A2-208	ENST00000481570	CHMP4C	Q96CF2	233 aa		13.91	□□□□□ -0.18
COL1A2-208	ENST00000481570	VPS37C	A5D8V6	355 aa	Predicted RBP	13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	UBTFL1	P0CB47	393 aa	Predicted RBP	13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	RNF20	Q5VTR2	975 aa		13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	PRAM1	Q96QH2	718 aa		13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	PHF23	Q9BUL5	403 aa	Predicted RBP	13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	MTMR7	Q9Y216	660 aa		13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	ERICH2	A1L162	156 aa		13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	STRN4	Q9NRL3	753 aa		13.9	□□□□□ -0.18
COL1A2-208	ENST00000481570	TPM2	P07951	284 aa		13.89	□□□□□ -0.19
COL1A2-208	ENST00000481570	INTS3	Q68E01	1043 aa	Known RBP	13.89	□□□□□ -0.19
COL1A2-208	ENST00000481570	BICD2	Q8TD16	824 aa		13.89	□□□□□ -0.19
COL1A2-208	ENST00000481570	CNTLN	Q9NXG0	1405 aa		13.89	□□□□□ -0.19
COL1A2-208	ENST00000481570	PRG4	Q92954	1404 aa	Predicted RBP	13.89	□□□□□ -0.19
COL1A2-208	ENST00000481570	RBM42	Q9BTD8	480 aa	Known RBP	13.88	□□□□□ -0.19
COL1A2-208	ENST00000481570	FYCO1	Q9BQS8	1478 aa		13.88	□□□□□ -0.19
COL1A2-208	ENST00000481570	ERC2	O15083	957 aa		13.88	□□□□□ -0.19
COL1A2-208	ENST00000481570	PROSER2	Q86WR7	435 aa	Predicted RBP	13.88	□□□□□ -0.19
COL1A2-208	ENST00000481570	NBPF1	Q3BBV0	1214 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	GPRASP1	Q5JY77	1395 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	CASKIN1	Q8WXD9	1431 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	PRKAR2B	P31323	418 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	CDCA7L	Q96GN5	454 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	SMC3	Q9UQE7	1217 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	WASHC2A	Q641Q2	1341 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	HSP90AB4P	Q58FF6	505 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	TCP11L2	Q8N4U5	519 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	ZNF592	Q92610	1267 aa		13.87	□□□□□ -0.19
COL1A2-208	ENST00000481570	C1orf115	Q9H7X2	142 aa		13.86	□□□□□ -0.19
COL1A2-208	ENST00000481570	TPM1	P09493	284 aa		13.86	□□□□□ -0.19
COL1A2-208	ENST00000481570	GRIN2B	Q13224	1484 aa		13.85	□□□□□ -0.19
COL1A2-208	ENST00000481570	PPP2R1A	P30153	589 aa		13.85	□□□□□ -0.19
COL1A2-208	ENST00000481570	CFTR	P13569	1480 aa		13.85	□□□□□ -0.19
COL1A2-208	ENST00000481570	DNAJC2	Q99543	621 aa	Known RBP	13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	RRBP1	Q9P2E9	1410 aa	Known RBP	13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	GSE1	Q14687	1217 aa		13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	CWC22	Q9HCG8	908 aa	Known RBP	13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	SYNJ2	O15056	1496 aa		13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	EXOSC9	Q06265	439 aa	Known RBP	13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	RALYL	Q86SE5	291 aa	Known RBP	13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	CDK19	Q9BWU1	502 aa		13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	C22orf23	Q9BZE7	217 aa		13.84	□□□□□ -0.19
COL1A2-208	ENST00000481570	CCDC30	Q5VVM6	783 aa		13.83	□□□□□ -0.19
COL1A2-208	ENST00000481570	STAC3	Q96MF2	364 aa		13.83	□□□□□ -0.19
COL1A2-208	ENST00000481570	FSD1	Q9BTV5	496 aa		13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	NES	P48681	1621 aa		13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	NUTM2E	B1AL46	878 aa	Predicted RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	SLC12A5	Q9H2X9	1139 aa		13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	SURF6	O75683	361 aa	Known RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	CCDC47	Q96A33	483 aa	Known RBP	13.83	□□□□□ -0.2
COL1A2-208	ENST00000481570	GAS2L2	Q8NHY3	880 aa		13.82	□□□□□ -0.2
COL1A2-208	ENST00000481570	TSR2	Q969E8	191 aa	Known RBP	13.82	□□□□□ -0.2
COL1A2-208	ENST00000481570	CABP1	Q9NZU7	370 aa		13.82	□□□□□ -0.2
COL1A2-208	ENST00000481570	KIF6	Q6ZMV9	814 aa		13.81	□□□□□ -0.2
COL1A2-208	ENST00000481570	CDC45	O75419	566 aa		13.81	□□□□□ -0.2
COL1A2-208	ENST00000481570	CHMP5	Q9NZZ3	219 aa		13.81	□□□□□ -0.2
COL1A2-208	ENST00000481570	CCDC43	Q96MW1	224 aa	Known RBP	13.81	□□□□□ -0.2
COL1A2-208	ENST00000481570	SCAPER	Q9BY12	1400 aa		13.81	□□□□□ -0.2
COL1A2-208	ENST00000481570	TWISTNB	Q3B726	338 aa	Predicted RBP	13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	DDX54	Q8TDD1	881 aa	Known RBP	13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	SAFB	Q15424	915 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	CNTROB	Q8N137	903 aa		13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	SULT6B1	Q6IMI4	303 aa		13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	NOB1	Q9ULX3	412 aa	Known RBP	13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	BRD4	O60885	1362 aa	Predicted RBP	13.8	□□□□□ -0.2
COL1A2-208	ENST00000481570	NINL	Q9Y2I6	1382 aa		13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	NCAPD3	P42695	1498 aa		13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	RAPGEF3	O95398	923 aa		13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	ANKRD20A12P	Q8NF67	263 aa		13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	HOOK1	Q9UJC3	728 aa	Known RBP	13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	ARAP1	Q96P48	1450 aa		13.79	□□□□□ -0.2
COL1A2-208	ENST00000481570	SASS6	Q6UVJ0	657 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	SMG6	Q86US8	1419 aa	Known RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	TAT	P17735	454 aa	Predicted RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	C9orf84	Q5VXU9	1444 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	XPC	Q01831	940 aa	Predicted RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	IK	Q13123	557 aa	Predicted RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	SLC26A8	Q96RN1	970 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	TNNT3	P45378	269 aa	Predicted RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	STK11IP	Q8N1F8	1099 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	CLASRP	Q8N2M8	674 aa	Known RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	SLC4A2	P04920	1241 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	TOM1L2	Q6ZVM7	507 aa		13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.78	□□□□□ -0.2
COL1A2-208	ENST00000481570	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	GNAI3	P08754	354 aa		13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	CABP4	P57796	275 aa		13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	MYL6B	P14649	208 aa		13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	RRP12	Q5JTH9	1297 aa	Known RBP	13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	CCDC73	Q6ZRK6	1079 aa		13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	SIL1	Q9H173	461 aa		13.77	□□□□□ -0.21
COL1A2-208	ENST00000481570	BCAR3	O75815	825 aa		13.76	□□□□□ -0.21
COL1A2-208	ENST00000481570	IPO7	O95373	1038 aa	Known RBP	13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms