RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-223ENST00000480525 TULP4Q9NRJ4 1543 aa7.29□□□□□ -1.24
HDAC6-223ENST00000480525 CFAP70Q5T0N1 1121 aa7.29□□□□□ -1.24
HDAC6-223ENST00000480525 BRD4O60885 1362 aaPredicted RBP7.29□□□□□ -1.24
HDAC6-223ENST00000480525 NUTM2DQ5VT03 806 aaPredicted RBP7.28□□□□□ -1.24
HDAC6-223ENST00000480525 SIN3AQ96ST3 1273 aa7.28□□□□□ -1.24
HDAC6-223ENST00000480525 ROCK2O75116 1388 aaKnown RBP7.27□□□□□ -1.25
HDAC6-223ENST00000480525 C1orf167Q5SNV9 1468 aa7.27□□□□□ -1.25
HDAC6-223ENST00000480525 SHPRHQ149N8 1683 aa7.27□□□□□ -1.25
HDAC6-223ENST00000480525 COL16A1Q07092 1604 aaPredicted RBP7.27□□□□□ -1.25
HDAC6-223ENST00000480525 USP32Q8NFA0 1604 aa7.27□□□□□ -1.25
HDAC6-223ENST00000480525 NINLQ9Y2I6 1382 aa7.26□□□□□ -1.25
HDAC6-223ENST00000480525 ATF3P18847 181 aa7.26□□□□□ -1.25
HDAC6-223ENST00000480525 SLAIN2Q9P270 581 aa7.26□□□□□ -1.25
HDAC6-223ENST00000480525 COL22A1Q8NFW1 1626 aaPredicted RBP7.26□□□□□ -1.25
HDAC6-223ENST00000480525 RGPD8O14715 1765 aaPredicted RBP7.25□□□□□ -1.25
HDAC6-223ENST00000480525 ATP7BP35670 1465 aa7.25□□□□□ -1.25
HDAC6-223ENST00000480525 PHLPP1O60346 1717 aa7.25□□□□□ -1.25
HDAC6-223ENST00000480525 USP54Q70EL1 1684 aa7.25□□□□□ -1.25
HDAC6-223ENST00000480525 CENPJQ9HC77 1338 aaPredicted RBP7.25□□□□□ -1.25
HDAC6-223ENST00000480525 UBAP1LF5GYI3 381 aa7.24□□□□□ -1.25
HDAC6-223ENST00000480525 NBPF8Q3BBV2 869 aa7.24□□□□□ -1.25
HDAC6-223ENST00000480525 TMEM132EQ6IEE7 984 aa7.24□□□□□ -1.25
HDAC6-223ENST00000480525 CCER1Q8TC90 406 aaPredicted RBP7.24□□□□□ -1.25
HDAC6-223ENST00000480525 KDM2AQ9Y2K7 1162 aa7.24□□□□□ -1.25
HDAC6-223ENST00000480525 AKAP12Q02952 1782 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 POLR3AO14802 1390 aaPredicted RBP7.23□□□□□ -1.25
HDAC6-223ENST00000480525 ATAD2Q6PL18 1390 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 PLEKHH1Q9ULM0 1364 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 WASLO00401 505 aaPredicted RBP7.23□□□□□ -1.25
HDAC6-223ENST00000480525 NEUROD1Q13562 356 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 NBPF1Q3BBV0 1214 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 PRAM1Q96QH2 718 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 MED1Q15648 1581 aaPredicted RBP7.23□□□□□ -1.25
HDAC6-223ENST00000480525 TRPM3Q9HCF6 1732 aaPredicted RBP7.23□□□□□ -1.25
HDAC6-223ENST00000480525 SOS2Q07890 1332 aaPredicted RBP7.23□□□□□ -1.25
HDAC6-223ENST00000480525 NPHP3Q7Z494 1330 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 PXDNQ92626 1479 aa7.23□□□□□ -1.25
HDAC6-223ENST00000480525 POGKQ9P215 609 aa7.22□□□□□ -1.25
HDAC6-223ENST00000480525 ALS2Q96Q42 1657 aa7.22□□□□□ -1.25
HDAC6-223ENST00000480525 SBNO1A3KN83 1393 aa7.21□□□□□ -1.25
HDAC6-223ENST00000480525 MON2Q7Z3U7 1717 aa7.21□□□□□ -1.25
HDAC6-223ENST00000480525 PLEKHG3A1L390 1219 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 BRINP3Q76B58 766 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 C14orf37Q86TY3 774 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 CARD11Q9BXL7 1154 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 TRAK1Q9UPV9 953 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 EVC2Q86UK5 1308 aa7.21□□□□□ -1.26
HDAC6-223ENST00000480525 MARF1Q9Y4F3 1742 aaKnown RBP7.21□□□□□ -1.26
HDAC6-223ENST00000480525 USP47Q96K76 1375 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 JCADQ9P266 1359 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 NRKQ7Z2Y5 1582 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 CDCA8Q53HL2 280 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 WAPLQ7Z5K2 1190 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 TESK2Q96S53 571 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 CCDC61Q9Y6R9 512 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 CRYBG1Q9Y4K1 1723 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 SPATA31A6Q5VVP1 1343 aa7.2□□□□□ -1.26
HDAC6-223ENST00000480525 LRRC59Q96AG4 307 aaKnown RBP7.19□□□□□ -1.26
HDAC6-223ENST00000480525 STK26Q9P289 416 aa7.19□□□□□ -1.26
HDAC6-223ENST00000480525 ARHGEF10O15013 1369 aa7.19□□□□□ -1.26
HDAC6-223ENST00000480525 CPSF1Q10570 1443 aaKnown RBP7.18□□□□□ -1.26
HDAC6-223ENST00000480525 ABCA3Q99758 1704 aa7.18□□□□□ -1.26
HDAC6-223ENST00000480525 ABCC6O95255 1503 aa7.18□□□□□ -1.26
HDAC6-223ENST00000480525 ILDR1Q86SU0 546 aaPredicted RBP7.18□□□□□ -1.26
HDAC6-223ENST00000480525 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.18□□□□□ -1.26
HDAC6-223ENST00000480525 TNS3Q68CZ2 1445 aa7.18□□□□□ -1.26
HDAC6-223ENST00000480525 SSH2Q76I76 1423 aa7.18□□□□□ -1.26
HDAC6-223ENST00000480525 MYOM1P52179 1685 aa7.17□□□□□ -1.26
HDAC6-223ENST00000480525 ZNF692Q9BU19 519 aaPredicted RBP7.17□□□□□ -1.26
HDAC6-223ENST00000480525 PHF8Q9UPP1 1060 aa7.17□□□□□ -1.26
HDAC6-223ENST00000480525 NWD2Q9ULI1 1742 aa7.17□□□□□ -1.26
HDAC6-223ENST00000480525 PRR36Q9H6K5 1346 aa7.17□□□□□ -1.26
HDAC6-223ENST00000480525 PHRF1Q9P1Y6 1649 aaKnown RBP7.16□□□□□ -1.26
HDAC6-223ENST00000480525 ZEB1P37275 1124 aaPredicted RBP7.16□□□□□ -1.26
HDAC6-223ENST00000480525 PSME1Q06323 249 aa7.16□□□□□ -1.26
HDAC6-223ENST00000480525 NUDT16Q96DE0 195 aaKnown RBP7.16□□□□□ -1.26
HDAC6-223ENST00000480525 CDK19Q9BWU1 502 aa7.16□□□□□ -1.26
HDAC6-223ENST00000480525 PNPLA6Q8IY17 1366 aa7.16□□□□□ -1.26
HDAC6-223ENST00000480525 USP6P35125 1406 aa7.16□□□□□ -1.26
HDAC6-223ENST00000480525 PPIP5K1Q6PFW1 1433 aa7.16□□□□□ -1.26
HDAC6-223ENST00000480525 ST20-MTHFSA0A0A6YYL1 179 aa7.15□□□□□ -1.26
HDAC6-223ENST00000480525 HSPA1LP34931 641 aa7.15□□□□□ -1.26
HDAC6-223ENST00000480525 EIF4G2P78344 907 aaKnown RBP eCLIP7.15□□□□□ -1.262e-9■■■■■ 73
HDAC6-223ENST00000480525 TMF1P82094 1093 aa7.15□□□□□ -1.26
HDAC6-223ENST00000480525 SPATA31A3Q5VYP0 1347 aa7.15□□□□□ -1.26
HDAC6-223ENST00000480525 MINK1Q8N4C8 1332 aaPredicted RBP7.15□□□□□ -1.26
HDAC6-223ENST00000480525 TTC21AQ8NDW8 1320 aa7.15□□□□□ -1.26
HDAC6-223ENST00000480525 CD163L1Q9NR16 1453 aa7.15□□□□□ -1.27
HDAC6-223ENST00000480525 SLIT3O75094 1523 aa7.14□□□□□ -1.27
HDAC6-223ENST00000480525 ESCO1Q5FWF5 840 aa7.14□□□□□ -1.27
HDAC6-223ENST00000480525 EDC4Q6P2E9 1401 aaKnown RBP7.14□□□□□ -1.27
HDAC6-223ENST00000480525 USP31Q70CQ4 1352 aa7.14□□□□□ -1.27
HDAC6-223ENST00000480525 ANKRD36BQ8N2N9 1353 aa7.14□□□□□ -1.27
HDAC6-223ENST00000480525 RBM33Q96EV2 1170 aaKnown RBP7.14□□□□□ -1.27
HDAC6-223ENST00000480525 ORAI2Q96SN7 254 aa7.14□□□□□ -1.27
HDAC6-223ENST00000480525 ANKRD26Q9UPS8 1709 aa7.13□□□□□ -1.27
HDAC6-223ENST00000480525 PIK3C2AO00443 1686 aa7.13□□□□□ -1.27
HDAC6-223ENST00000480525 PIP4K2BP78356 416 aa7.13□□□□□ -1.27
HDAC6-223ENST00000480525 COL14A1Q05707 1796 aaKnown RBP7.13□□□□□ -1.27
HDAC6-223ENST00000480525 CPDO75976 1380 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms