RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 USP46P62068 366 aa9.82□□□□□ -0.84
UPF3A-205ENST00000479712 DMRTA1Q5VZB9 504 aa9.82□□□□□ -0.84
UPF3A-205ENST00000479712 AXIN2Q9Y2T1 843 aa9.82□□□□□ -0.84
UPF3A-205ENST00000479712 PCDHB15Q9Y5E8 787 aa9.82□□□□□ -0.84
UPF3A-205ENST00000479712 LAMC3Q9Y6N6 1575 aa9.81□□□□□ -0.84
UPF3A-205ENST00000479712 HOXA2O43364 376 aa9.81□□□□□ -0.84
UPF3A-205ENST00000479712 PBX2P40425 430 aa9.81□□□□□ -0.84
UPF3A-205ENST00000479712 SLC4A3P48751 1232 aa9.81□□□□□ -0.84
UPF3A-205ENST00000479712 HDGFP51858 240 aaKnown RBP9.81□□□□□ -0.84
UPF3A-205ENST00000479712 COG6Q9Y2V7 657 aa9.81□□□□□ -0.84
UPF3A-205ENST00000479712 HECW2Q9P2P5 1572 aa9.8□□□□□ -0.84
UPF3A-205ENST00000479712 NUTM2BA6NNL0 878 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-205ENST00000479712 NUTM2EB1AL46 878 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-205ENST00000479712 SLC10A3P09131 477 aa9.8□□□□□ -0.84
UPF3A-205ENST00000479712 FAM98CQ17RN3 349 aaKnown RBP9.8□□□□□ -0.84
UPF3A-205ENST00000479712 NUTM2DQ5VT03 806 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-205ENST00000479712 NUTM2AQ8IVF1 878 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-205ENST00000479712 PRPF38BQ5VTL8 546 aaKnown RBP9.79□□□□□ -0.84
UPF3A-205ENST00000479712 FNBP4Q8N3X1 1017 aaPredicted RBP9.79□□□□□ -0.84
UPF3A-205ENST00000479712 PLA2G2EQ9NZK7 142 aa9.79□□□□□ -0.84
UPF3A-205ENST00000479712 PDS5BQ9NTI5 1447 aa9.79□□□□□ -0.84
UPF3A-205ENST00000479712 AP1G2O75843 785 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 FDX1P10109 184 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 RTL5Q5HYW3 569 aaPredicted RBP9.78□□□□□ -0.84
UPF3A-205ENST00000479712 MTMR14Q8NCE2 650 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 CABLES1Q8TDN4 633 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 ZBTB3Q9H5J0 574 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 VPS9D1Q9Y2B5 631 aa9.78□□□□□ -0.84
UPF3A-205ENST00000479712 SLF2Q8IX21 1173 aa9.77□□□□□ -0.85
UPF3A-205ENST00000479712 ZNF777Q9ULD5 760 aaPredicted RBP9.77□□□□□ -0.85
UPF3A-205ENST00000479712 HRCP23327 699 aa9.76□□□□□ -0.85
UPF3A-205ENST00000479712 SAMD7Q7Z3H4 446 aa9.76□□□□□ -0.85
UPF3A-205ENST00000479712 CCDC82Q8N4S0 544 aa9.76□□□□□ -0.85
UPF3A-205ENST00000479712 NBPF3Q9H094 633 aa9.76□□□□□ -0.85
UPF3A-205ENST00000479712 GUCA2AQ02747 115 aa9.75□□□□□ -0.85
UPF3A-205ENST00000479712 LAPTM4BQ86VI4 370 aa9.75□□□□□ -0.85
UPF3A-205ENST00000479712 HLA-CQ95604 372 aa9.75□□□□□ -0.85
UPF3A-205ENST00000479712 HCSTQ9UBK5 93 aa9.75□□□□□ -0.85
UPF3A-205ENST00000479712 RNF40O75150 1001 aa9.74□□□□□ -0.85
UPF3A-205ENST00000479712 USP17L8P0C7I0 530 aa9.74□□□□□ -0.85
UPF3A-205ENST00000479712 PRM3Q9NNZ6 103 aa9.74□□□□□ -0.85
UPF3A-205ENST00000479712 PCDHGC3Q9UN70 934 aa9.74□□□□□ -0.85
UPF3A-205ENST00000479712 CFHP08603 1231 aa9.73□□□□□ -0.85
UPF3A-205ENST00000479712 GRIPAP1Q4V328 841 aa9.73□□□□□ -0.85
UPF3A-205ENST00000479712 GDPD2Q9HCC8 539 aa9.73□□□□□ -0.85
UPF3A-205ENST00000479712 FUT2Q10981 343 aa9.72□□□□□ -0.85
UPF3A-205ENST00000479712 MTMR2Q13614 643 aa9.72□□□□□ -0.85
UPF3A-205ENST00000479712 WWC1Q8IX03 1113 aa9.72□□□□□ -0.85
UPF3A-205ENST00000479712 ZNF330Q9Y3S2 320 aaPredicted RBP9.72□□□□□ -0.85
UPF3A-205ENST00000479712 BHMG1C9JSJ3 638 aaPredicted RBP9.7□□□□□ -0.86
UPF3A-205ENST00000479712 ABL2P42684 1182 aa9.7□□□□□ -0.86
UPF3A-205ENST00000479712 ZFRQ96KR1 1074 aaKnown RBP9.7□□□□□ -0.86
UPF3A-205ENST00000479712 ATAD2BQ9ULI0 1458 aa9.7□□□□□ -0.86
UPF3A-205ENST00000479712 TK2O00142 265 aa9.69□□□□□ -0.86
UPF3A-205ENST00000479712 ADGRD1Q6QNK2 874 aa9.69□□□□□ -0.86
UPF3A-205ENST00000479712 MRPL50Q8N5N7 158 aaKnown RBP9.69□□□□□ -0.86
UPF3A-205ENST00000479712 HELBQ8NG08 1087 aaPredicted RBP9.69□□□□□ -0.86
UPF3A-205ENST00000479712 CCDC97Q96F63 343 aaPredicted RBP9.69□□□□□ -0.86
UPF3A-205ENST00000479712 TBC1D2BQ9UPU7 963 aa9.69□□□□□ -0.86
UPF3A-205ENST00000479712 C6orf229H3BNL8 230 aa9.68□□□□□ -0.86
UPF3A-205ENST00000479712 ATP6V1AP38606 617 aa9.68□□□□□ -0.86
UPF3A-205ENST00000479712 KMT5BQ4FZB7 885 aa9.68□□□□□ -0.86
UPF3A-205ENST00000479712 TSC1Q92574 1164 aa9.68□□□□□ -0.86
UPF3A-205ENST00000479712 SERPINA10Q9UK55 444 aa9.68□□□□□ -0.86
UPF3A-205ENST00000479712 NDUFB9Q9Y6M9 179 aa9.67□□□□□ -0.86
UPF3A-205ENST00000479712 HMGXB3Q12766 1538 aa9.66□□□□□ -0.86
UPF3A-205ENST00000479712 CTDSPL2Q05D32 466 aa9.66□□□□□ -0.86
UPF3A-205ENST00000479712 NECTIN2Q92692 538 aa9.66□□□□□ -0.86
UPF3A-205ENST00000479712 LRCH3Q96II8 777 aa9.66□□□□□ -0.86
UPF3A-205ENST00000479712 SYNJ2O15056 1496 aa9.66□□□□□ -0.86
UPF3A-205ENST00000479712 CFAP99D6REC4 459 aa9.65□□□□□ -0.86
UPF3A-205ENST00000479712 GJD4Q96KN9 370 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-205ENST00000479712 HMX1Q9NP08 348 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-205ENST00000479712 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.64□□□□□ -0.87
UPF3A-205ENST00000479712 HRO43593 1189 aa9.63□□□□□ -0.87
UPF3A-205ENST00000479712 SYMPKQ92797 1274 aaKnown RBP9.63□□□□□ -0.87
UPF3A-205ENST00000479712 ACTN4O43707 911 aaKnown RBP9.62□□□□□ -0.87
UPF3A-205ENST00000479712 LRRN4Q8WUT4 740 aa9.62□□□□□ -0.87
UPF3A-205ENST00000479712 RSF1Q96T23 1441 aaPredicted RBP9.62□□□□□ -0.87
UPF3A-205ENST00000479712 CHD1O14646 1710 aa9.62□□□□□ -0.87
UPF3A-205ENST00000479712 PUS10Q3MIT2 529 aaKnown RBP9.61□□□□□ -0.87
UPF3A-205ENST00000479712 MORN1Q5T089 497 aa9.61□□□□□ -0.87
UPF3A-205ENST00000479712 PRR7Q8TB68 274 aa9.61□□□□□ -0.87
UPF3A-205ENST00000479712 PRR14Q9BWN1 585 aa9.61□□□□□ -0.87
UPF3A-205ENST00000479712 TRIM34Q9BYJ4 488 aa9.61□□□□□ -0.87
UPF3A-205ENST00000479712 SPATA31D1Q6ZQQ2 1576 aa9.61□□□□□ -0.87
UPF3A-205ENST00000479712 GOLGA8CPA6NN73 597 aa9.6□□□□□ -0.87
UPF3A-205ENST00000479712 POM121CA8CG34 1229 aa9.6□□□□□ -0.87
UPF3A-205ENST00000479712 RETREG3Q86VR2 466 aa9.6□□□□□ -0.87
UPF3A-205ENST00000479712 ANKK1Q8NFD2 765 aa9.6□□□□□ -0.87
UPF3A-205ENST00000479712 CALR3Q96L12 384 aaKnown RBP9.6□□□□□ -0.87
UPF3A-205ENST00000479712 STAC3Q96MF2 364 aa9.6□□□□□ -0.87
UPF3A-205ENST00000479712 IRF5Q13568 498 aa9.59□□□□□ -0.87
UPF3A-205ENST00000479712 Q3C1V9 767 aa9.59□□□□□ -0.87
UPF3A-205ENST00000479712 GLMNQ92990 594 aa9.59□□□□□ -0.87
UPF3A-205ENST00000479712 SLC27A5Q9Y2P5 690 aa9.59□□□□□ -0.87
UPF3A-205ENST00000479712 ZNF608Q9ULD9 1512 aaPredicted RBP9.58□□□□□ -0.88
UPF3A-205ENST00000479712 WASHC4Q2M389 1173 aa9.57□□□□□ -0.88
UPF3A-205ENST00000479712 BAZ1BQ9UIG0 1483 aaKnown RBP9.56□□□□□ -0.88
UPF3A-205ENST00000479712 CEP164Q9UPV0 1460 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms