RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, humanhuman

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-211ENST00000478582 BRINP3Q76B58 766 aa38.43■■■■□ 3.74
CCM2-211ENST00000478582 STK26Q9P289 416 aa38.41■■■■□ 3.74
CCM2-211ENST00000478582 SIRT1Q96EB6 747 aa38.4■■■■□ 3.74
CCM2-211ENST00000478582 KNDC1Q76NI1 1749 aa38.39■■■■□ 3.74
CCM2-211ENST00000478582 AHDC1Q5TGY3 1603 aaPredicted RBP38.37■■■■□ 3.73
CCM2-211ENST00000478582 NBPF8Q3BBV2 869 aa38.36■■■■□ 3.73
CCM2-211ENST00000478582 COL16A1Q07092 1604 aaPredicted RBP38.35■■■■□ 3.73
CCM2-211ENST00000478582 NBPF1Q3BBV0 1214 aa38.34■■■■□ 3.73
CCM2-211ENST00000478582 JCADQ9P266 1359 aa38.33■■■■□ 3.73
CCM2-211ENST00000478582 PHF23Q9BUL5 403 aaPredicted RBP38.33■■■■□ 3.73
CCM2-211ENST00000478582 DLC1Q96QB1 1528 aa38.33■■■■□ 3.73
CCM2-211ENST00000478582 TRPM1Q7Z4N2 1603 aa38.31■■■■□ 3.72
CCM2-211ENST00000478582 WAPLQ7Z5K2 1190 aa38.31■■■■□ 3.72
CCM2-211ENST00000478582 C1orf167Q5SNV9 1468 aa38.28■■■■□ 3.72
CCM2-211ENST00000478582 TRAK1Q9UPV9 953 aa38.26■■■■□ 3.72
CCM2-211ENST00000478582 PLEKHH1Q9ULM0 1364 aa38.23■■■■□ 3.71
CCM2-211ENST00000478582 NHSL1Q5SYE7 1610 aa38.22■■■■□ 3.71
CCM2-211ENST00000478582 ROCK2O75116 1388 aaKnown RBP38.21■■■■□ 3.71
CCM2-211ENST00000478582 GPRASP1Q5JY77 1395 aa38.21■■■■□ 3.71
CCM2-211ENST00000478582 PRAM1Q96QH2 718 aa38.21■■■■□ 3.71
CCM2-211ENST00000478582 CDC42BPGQ6DT37 1551 aa38.21■■■■□ 3.71
CCM2-211ENST00000478582 RALGAPBQ86X10 1494 aa38.2■■■■□ 3.71
CCM2-211ENST00000478582 ORAI2Q96SN7 254 aa38.19■■■■□ 3.7
CCM2-211ENST00000478582 POGKQ9P215 609 aa38.17■■■■□ 3.7
CCM2-211ENST00000478582 SPATA31A6Q5VVP1 1343 aa38.16■■■■□ 3.7
CCM2-211ENST00000478582 DDX17Q92841 729 aaKnown RBP38.16■■■■□ 3.7
CCM2-211ENST00000478582 LRRC59Q96AG4 307 aaKnown RBP38.15■■■■□ 3.7
CCM2-211ENST00000478582 SHPRHQ149N8 1683 aa38.14■■■■□ 3.7
CCM2-211ENST00000478582 ARHGEF28Q8N1W1 1705 aaKnown RBP38.14■■■■□ 3.7
CCM2-211ENST00000478582 RGS17Q9UGC6 210 aaPredicted RBP38.13■■■■□ 3.69
CCM2-211ENST00000478582 SOCS7O14512 581 aa38.11■■■■□ 3.69
CCM2-211ENST00000478582 ESCO1Q5FWF5 840 aa38.09■■■■□ 3.69
CCM2-211ENST00000478582 SAFB2Q14151 953 aaKnown RBP eCLIP38.07■■■■□ 3.685e-8■■■□□ 18
CCM2-211ENST00000478582 CARD11Q9BXL7 1154 aa38.07■■■■□ 3.68
CCM2-211ENST00000478582 NUTM2FA1L443 756 aa38.05■■■■□ 3.68
CCM2-211ENST00000478582 SOS2Q07890 1332 aaPredicted RBP38.05■■■■□ 3.68
CCM2-211ENST00000478582 FMN2Q9NZ56 1722 aa38.04■■■■□ 3.68
CCM2-211ENST00000478582 LRP6O75581 1613 aa38.02■■■■□ 3.68
CCM2-211ENST00000478582 ADGRB2O60241 1585 aa38.02■■■■□ 3.68
CCM2-211ENST00000478582 CENPJQ9HC77 1338 aaPredicted RBP38.01■■■■□ 3.68
CCM2-211ENST00000478582 EIF3AQ14152 1382 aaKnown RBP37.99■■■■□ 3.67
CCM2-211ENST00000478582 PNPLA6Q8IY17 1366 aa37.98■■■■□ 3.67
CCM2-211ENST00000478582 NPHP3Q7Z494 1330 aa37.98■■■■□ 3.67
CCM2-211ENST00000478582 MINK1Q8N4C8 1332 aaPredicted RBP37.98■■■■□ 3.67
CCM2-211ENST00000478582 NUTM2BA6NNL0 878 aaPredicted RBP37.97■■■■□ 3.67
CCM2-211ENST00000478582 NUTM2EB1AL46 878 aaPredicted RBP37.97■■■■□ 3.67
CCM2-211ENST00000478582 MEX3CQ5U5Q3 659 aaKnown RBP37.97■■■■□ 3.67
CCM2-211ENST00000478582 NUTM2AQ8IVF1 878 aaPredicted RBP37.97■■■■□ 3.67
CCM2-211ENST00000478582 FOXO3O43524 673 aa37.95■■■■□ 3.67
CCM2-211ENST00000478582 POTEAQ6S8J7 498 aa37.93■■■■□ 3.66
CCM2-211ENST00000478582 HIRIP3Q9BW71 556 aaPredicted RBP37.93■■■■□ 3.66
CCM2-211ENST00000478582 WASLO00401 505 aaPredicted RBP37.91■■■■□ 3.66
CCM2-211ENST00000478582 RGPD8O14715 1765 aaPredicted RBP37.88■■■■□ 3.66
CCM2-211ENST00000478582 PXDNQ92626 1479 aa37.88■■■■□ 3.65
CCM2-211ENST00000478582 QRICH2Q9H0J4 1663 aa37.88■■■■□ 3.65
CCM2-211ENST00000478582 KIF1AQ12756 1690 aa37.87■■■■□ 3.65
CCM2-211ENST00000478582 XPCQ01831 940 aaPredicted RBP37.85■■■■□ 3.65
CCM2-211ENST00000478582 PHF8Q9UPP1 1060 aa37.85■■■■□ 3.65
CCM2-211ENST00000478582 SBNO2Q9Y2G9 1366 aa37.84■■■■□ 3.65
CCM2-211ENST00000478582 ANKARQ7Z5J8 1434 aa37.84■■■■□ 3.65
CCM2-211ENST00000478582 ZNF772Q68DY9 489 aaPredicted RBP37.82■■■■□ 3.64
CCM2-211ENST00000478582 CDK19Q9BWU1 502 aa37.82■■■■□ 3.64
CCM2-211ENST00000478582 TULP4Q9NRJ4 1543 aa37.81■■■■□ 3.64
CCM2-211ENST00000478582 USP47Q96K76 1375 aa37.8■■■■□ 3.64
CCM2-211ENST00000478582 KRT28Q7Z3Y7 464 aa37.79■■■■□ 3.64
CCM2-211ENST00000478582 USP32Q8NFA0 1604 aa37.78■■■■□ 3.64
CCM2-211ENST00000478582 COL22A1Q8NFW1 1626 aaPredicted RBP37.77■■■■□ 3.64
CCM2-211ENST00000478582 ST20-MTHFSA0A0A6YYL1 179 aa37.77■■■■□ 3.64
CCM2-211ENST00000478582 PRR36Q9H6K5 1346 aa37.76■■■■□ 3.64
CCM2-211ENST00000478582 EVC2Q86UK5 1308 aa37.75■■■■□ 3.63
CCM2-211ENST00000478582 AFF2P51816 1311 aa37.73■■■■□ 3.63
CCM2-211ENST00000478582 SPATA31A3Q5VYP0 1347 aa37.73■■■■□ 3.63
CCM2-211ENST00000478582 ADAMTS2O95450 1211 aa37.73■■■■□ 3.63
CCM2-211ENST00000478582 PSME1Q06323 249 aa37.73■■■■□ 3.63
CCM2-211ENST00000478582 SLC24A1O60721 1099 aa37.72■■■■□ 3.63
CCM2-211ENST00000478582 PMFBP1Q8TBY8 1022 aa37.72■■■■□ 3.63
CCM2-211ENST00000478582 NUDT16Q96DE0 195 aaKnown RBP37.72■■■■□ 3.63
CCM2-211ENST00000478582 C8orf37Q96NL8 207 aa37.72■■■■□ 3.63
CCM2-211ENST00000478582 TESK2Q96S53 571 aa37.72■■■■□ 3.63
CCM2-211ENST00000478582 ATP7BP35670 1465 aa37.71■■■■□ 3.63
CCM2-211ENST00000478582 SRPK2P78362 688 aaKnown RBP37.69■■■■□ 3.62
CCM2-211ENST00000478582 NGLY1Q96IV0 654 aa37.67■■■■□ 3.62
CCM2-211ENST00000478582 CABP2Q9NPB3 220 aa37.67■■■■□ 3.62
CCM2-211ENST00000478582 CCDC61Q9Y6R9 512 aa37.66■■■■□ 3.62
CCM2-211ENST00000478582 SBNO1A3KN83 1393 aa37.64■■■■□ 3.62
CCM2-211ENST00000478582 EIF4G2P78344 907 aaKnown RBP eCLIP37.63■■■■□ 3.61
CCM2-211ENST00000478582 TNS3Q68CZ2 1445 aa37.61■■■■□ 3.61
CCM2-211ENST00000478582 PUS7Q96PZ0 661 aaKnown RBP37.61■■■■□ 3.61
CCM2-211ENST00000478582 ITSN1Q15811 1721 aa37.61■■■■□ 3.61
CCM2-211ENST00000478582 TOPAZ1Q8N9V7 1692 aa37.6■■■■□ 3.61
CCM2-211ENST00000478582 PLEKHG3A1L390 1219 aa37.59■■■■□ 3.61
CCM2-211ENST00000478582 RXRBP28702 533 aa37.59■■■■□ 3.61
CCM2-211ENST00000478582 QTRT2Q9H974 415 aaKnown RBP37.57■■■■□ 3.6
CCM2-211ENST00000478582 FNBP4Q8N3X1 1017 aaPredicted RBP37.56■■■■□ 3.6
CCM2-211ENST00000478582 NGDNQ8NEJ9 315 aaKnown RBP37.56■■■■□ 3.6
CCM2-211ENST00000478582 ATAD2Q6PL18 1390 aa37.55■■■■□ 3.6
CCM2-211ENST00000478582 HSPA5P11021 654 aaKnown RBP37.55■■■■□ 3.6
CCM2-211ENST00000478582 ARHGEF10O15013 1369 aa37.55■■■■□ 3.6
CCM2-211ENST00000478582 TMF1P82094 1093 aa37.54■■■■□ 3.6
CCM2-211ENST00000478582 PPIP5K1Q6PFW1 1433 aa37.53■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms