RNA–Protein interactions for RNA: ENST00000475401.1

TM9SF3-204, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 2

Gene TM9SF3, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-204ENST00000475401 IL21Q9HBE4 155 aa11.87□□□□□ -0.51
TM9SF3-204ENST00000475401 SPDYE5A6NIY4 337 aa11.86□□□□□ -0.51
TM9SF3-204ENST00000475401 FMNL1O95466 1100 aaPredicted RBP11.85□□□□□ -0.51
TM9SF3-204ENST00000475401 MTMR2Q13614 643 aa11.85□□□□□ -0.51
TM9SF3-204ENST00000475401 SALL2Q9Y467 1007 aaPredicted RBP11.85□□□□□ -0.51
TM9SF3-204ENST00000475401 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.84□□□□□ -0.51
TM9SF3-204ENST00000475401 PCDHGC3Q9UN70 934 aa11.84□□□□□ -0.51
TM9SF3-204ENST00000475401 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
TM9SF3-204ENST00000475401 ZPR1O75312 459 aa11.83□□□□□ -0.52
TM9SF3-204ENST00000475401 LILRB3O75022 631 aa11.81□□□□□ -0.52
TM9SF3-204ENST00000475401 HRCP23327 699 aa11.81□□□□□ -0.52
TM9SF3-204ENST00000475401 KCNC4Q03721 635 aa11.81□□□□□ -0.52
TM9SF3-204ENST00000475401 TJAP1Q5JTD0 557 aa11.81□□□□□ -0.52
TM9SF3-204ENST00000475401 QPCTQ16769 361 aa11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 BRICD5Q6PL45 260 aa11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 RETREG3Q86VR2 466 aa11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 CABLES1Q8TDN4 633 aa11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 SPSB2Q99619 263 aa11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 USB1Q9BQ65 265 aaKnown RBP11.8□□□□□ -0.52
TM9SF3-204ENST00000475401 PPP2R2DQ66LE6 453 aa11.78□□□□□ -0.52
TM9SF3-204ENST00000475401 RNF19BQ6ZMZ0 732 aa11.78□□□□□ -0.52
TM9SF3-204ENST00000475401 HELBQ8NG08 1087 aaPredicted RBP11.78□□□□□ -0.52
TM9SF3-204ENST00000475401 TSC1Q92574 1164 aa11.78□□□□□ -0.52
TM9SF3-204ENST00000475401 SYMPKQ92797 1274 aaKnown RBP11.78□□□□□ -0.52
TM9SF3-204ENST00000475401 ZNF516Q92618 1163 aa11.77□□□□□ -0.53
TM9SF3-204ENST00000475401 ITGBL1O95965 494 aaPredicted RBP11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 ADH1BP00325 375 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 RFC5P40937 340 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 TMEM259Q4ZIN3 620 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 PRR7Q8TB68 274 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 THAP11Q96EK4 314 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 GTF3C3Q9Y5Q9 886 aa11.76□□□□□ -0.53
TM9SF3-204ENST00000475401 RTL5Q5HYW3 569 aaPredicted RBP11.75□□□□□ -0.53
TM9SF3-204ENST00000475401 TLL1O43897 1013 aa11.74□□□□□ -0.53
TM9SF3-204ENST00000475401 MSS51Q4VC12 460 aa11.73□□□□□ -0.53
TM9SF3-204ENST00000475401 AP1G2O75843 785 aa11.72□□□□□ -0.53
TM9SF3-204ENST00000475401 SLC6A16Q9GZN6 736 aa11.72□□□□□ -0.53
TM9SF3-204ENST00000475401 PLSCR2Q9NRY7 297 aa11.72□□□□□ -0.53
TM9SF3-204ENST00000475401 GGCXP38435 758 aa11.71□□□□□ -0.53
TM9SF3-204ENST00000475401 DESI1Q6ICB0 168 aa11.7□□□□□ -0.54
TM9SF3-204ENST00000475401 CFAP99D6REC4 459 aa11.69□□□□□ -0.54
TM9SF3-204ENST00000475401 BANK1Q8NDB2 785 aa11.69□□□□□ -0.54
TM9SF3-204ENST00000475401 JUNDP17535 347 aa11.68□□□□□ -0.54
TM9SF3-204ENST00000475401 FAM160A2Q8N612 972 aaPredicted RBP11.68□□□□□ -0.54
TM9SF3-204ENST00000475401 NKX2-3Q8TAU0 364 aa11.68□□□□□ -0.54
TM9SF3-204ENST00000475401 FLIIQ13045 1269 aa11.67□□□□□ -0.54
TM9SF3-204ENST00000475401 APBB1O00213 710 aa11.66□□□□□ -0.54
TM9SF3-204ENST00000475401 PLA2G2EQ9NZK7 142 aa11.66□□□□□ -0.54
TM9SF3-204ENST00000475401 FBXO31Q5XUX0 539 aaPredicted RBP11.65□□□□□ -0.54
TM9SF3-204ENST00000475401 DXOO77932 396 aaKnown RBP11.64□□□□□ -0.55
TM9SF3-204ENST00000475401 S1PR4O95977 384 aa11.64□□□□□ -0.55
TM9SF3-204ENST00000475401 USP17L8P0C7I0 530 aa11.64□□□□□ -0.55
TM9SF3-204ENST00000475401 MMP16P51512 607 aa11.64□□□□□ -0.55
TM9SF3-204ENST00000475401 CTDSPL2Q05D32 466 aa11.64□□□□□ -0.55
TM9SF3-204ENST00000475401 PTPRNQ16849 979 aa11.63□□□□□ -0.55
TM9SF3-204ENST00000475401 IFFO2Q5TF58 517 aa11.63□□□□□ -0.55
TM9SF3-204ENST00000475401 LYPD8Q6UX82 237 aa11.63□□□□□ -0.55
TM9SF3-204ENST00000475401 PRDM9Q9NQV7 894 aa11.63□□□□□ -0.55
TM9SF3-204ENST00000475401 CCDC24Q8N4L8 307 aa11.61□□□□□ -0.55
TM9SF3-204ENST00000475401 NUDT12Q9BQG2 462 aa11.61□□□□□ -0.55
TM9SF3-204ENST00000475401 PRM3Q9NNZ6 103 aa11.61□□□□□ -0.55
TM9SF3-204ENST00000475401 CCNYL3P0C7X3 344 aa11.6□□□□□ -0.55
TM9SF3-204ENST00000475401 CTHP32929 405 aa11.59□□□□□ -0.55
TM9SF3-204ENST00000475401 ERICH6Q7L0X2 663 aa11.59□□□□□ -0.55
TM9SF3-204ENST00000475401 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.59□□□□□ -0.55
TM9SF3-204ENST00000475401 PPP1R18Q6NYC8 613 aa11.58□□□□□ -0.56
TM9SF3-204ENST00000475401 PNMA1Q8ND90 353 aa11.58□□□□□ -0.56
TM9SF3-204ENST00000475401 PER1O15534 1290 aaPredicted RBP11.57□□□□□ -0.56
TM9SF3-204ENST00000475401 LRRN4Q8WUT4 740 aa11.57□□□□□ -0.56
TM9SF3-204ENST00000475401 FCF1Q9Y324 198 aaKnown RBP11.57□□□□□ -0.56
TM9SF3-204ENST00000475401 SOCS7O14512 581 aa11.56□□□□□ -0.56
TM9SF3-204ENST00000475401 MCM6Q14566 821 aa11.56□□□□□ -0.56
TM9SF3-204ENST00000475401 ANKLE1Q8NAG6 615 aa11.56□□□□□ -0.56
TM9SF3-204ENST00000475401 SNRKQ9NRH2 765 aa11.56□□□□□ -0.56
TM9SF3-204ENST00000475401 RNF223E7ERA6 249 aa11.55□□□□□ -0.56
TM9SF3-204ENST00000475401 ZBTB24O43167 697 aaPredicted RBP11.55□□□□□ -0.56
TM9SF3-204ENST00000475401 EVA1BQ9NVM1 165 aa11.55□□□□□ -0.56
TM9SF3-204ENST00000475401 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
TM9SF3-204ENST00000475401 PPEF1O14829 653 aaPredicted RBP11.53□□□□□ -0.56
TM9SF3-204ENST00000475401 RAD21O60216 631 aa11.53□□□□□ -0.56
TM9SF3-204ENST00000475401 KCNH2Q12809 1159 aa11.53□□□□□ -0.56
TM9SF3-204ENST00000475401 MTMR14Q8NCE2 650 aa11.52□□□□□ -0.57
TM9SF3-204ENST00000475401 ARMC2Q8NEN0 867 aa11.52□□□□□ -0.57
TM9SF3-204ENST00000475401 A0A0G2JS52 829 aa11.51□□□□□ -0.57
TM9SF3-204ENST00000475401 NR6A1Q15406 480 aa11.51□□□□□ -0.57
TM9SF3-204ENST00000475401 F12P00748 615 aaPredicted RBP11.5□□□□□ -0.57
TM9SF3-204ENST00000475401 C14orf37Q86TY3 774 aa11.5□□□□□ -0.57
TM9SF3-204ENST00000475401 HMX1Q9NP08 348 aaPredicted RBP11.5□□□□□ -0.57
TM9SF3-204ENST00000475401 MAP10Q9P2G4 905 aa11.5□□□□□ -0.57
TM9SF3-204ENST00000475401 NDUFB9Q9Y6M9 179 aa11.5□□□□□ -0.57
TM9SF3-204ENST00000475401 WWC1Q8IX03 1113 aa11.48□□□□□ -0.57
TM9SF3-204ENST00000475401 UNC93B1Q9H1C4 597 aa11.47□□□□□ -0.57
TM9SF3-204ENST00000475401 NBPF14Q5TI25 921 aa11.46□□□□□ -0.57
TM9SF3-204ENST00000475401 CD2BP2O95400 341 aaKnown RBP11.45□□□□□ -0.58
TM9SF3-204ENST00000475401 GJD4Q96KN9 370 aaPredicted RBP11.45□□□□□ -0.58
TM9SF3-204ENST00000475401 TRIM34Q9BYJ4 488 aa11.45□□□□□ -0.58
TM9SF3-204ENST00000475401 FKBPLQ9UIM3 349 aa11.45□□□□□ -0.58
TM9SF3-204ENST00000475401 ZC3H4Q9UPT8 1303 aaKnown RBP11.44□□□□□ -0.58
TM9SF3-204ENST00000475401 RPIAP49247 311 aa11.44□□□□□ -0.58
TM9SF3-204ENST00000475401 PTCRAQ6ISU1 281 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms