RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 POGKQ9P215 609 aa21.91■■□□□ 1.1
SDC3-203ENST00000471567 HSPA1LP34931 641 aa21.9■■□□□ 1.1
SDC3-203ENST00000471567 CCER1Q8TC90 406 aaPredicted RBP21.9■■□□□ 1.1
SDC3-203ENST00000471567 MST1RQ04912 1400 aa21.89■■□□□ 1.1
SDC3-203ENST00000471567 TIMELESSQ9UNS1 1208 aa21.89■■□□□ 1.09
SDC3-203ENST00000471567 ROBO1Q9Y6N7 1651 aa21.88■■□□□ 1.09
SDC3-203ENST00000471567 CDC42BPGQ6DT37 1551 aa21.87■■□□□ 1.09
SDC3-203ENST00000471567 NBPF8Q3BBV2 869 aa21.87■■□□□ 1.09
SDC3-203ENST00000471567 TRPM1Q7Z4N2 1603 aa21.86■■□□□ 1.09
SDC3-203ENST00000471567 C1orf167Q5SNV9 1468 aa21.84■■□□□ 1.09
SDC3-203ENST00000471567 SAFB2Q14151 953 aaKnown RBP eCLIP21.84■■□□□ 1.09
SDC3-203ENST00000471567 BRINP3Q76B58 766 aa21.84■■□□□ 1.09
SDC3-203ENST00000471567 ROCK2O75116 1388 aaKnown RBP21.84■■□□□ 1.09
SDC3-203ENST00000471567 ARHGEF28Q8N1W1 1705 aaKnown RBP21.82■■□□□ 1.08
SDC3-203ENST00000471567 GPRASP1Q5JY77 1395 aa21.82■■□□□ 1.08
SDC3-203ENST00000471567 ADGRB2O60241 1585 aa21.79■■□□□ 1.08
SDC3-203ENST00000471567 MINK1Q8N4C8 1332 aaPredicted RBP21.79■■□□□ 1.08
SDC3-203ENST00000471567 RALGAPBQ86X10 1494 aa21.78■■□□□ 1.08
SDC3-203ENST00000471567 ORAI2Q96SN7 254 aa21.77■■□□□ 1.08
SDC3-203ENST00000471567 FMN2Q9NZ56 1722 aa21.77■■□□□ 1.08
SDC3-203ENST00000471567 CENPJQ9HC77 1338 aaPredicted RBP21.77■■□□□ 1.07
SDC3-203ENST00000471567 AHDC1Q5TGY3 1603 aaPredicted RBP21.77■■□□□ 1.07
SDC3-203ENST00000471567 HIRIP3Q9BW71 556 aaPredicted RBP21.76■■□□□ 1.07
SDC3-203ENST00000471567 EIF3AQ14152 1382 aaKnown RBP21.75■■□□□ 1.07
SDC3-203ENST00000471567 WASLO00401 505 aaPredicted RBP21.75■■□□□ 1.07
SDC3-203ENST00000471567 ESCO1Q5FWF5 840 aa21.75■■□□□ 1.07
SDC3-203ENST00000471567 CARD11Q9BXL7 1154 aa21.75■■□□□ 1.07
SDC3-203ENST00000471567 NUTM2FA1L443 756 aa21.74■■□□□ 1.07
SDC3-203ENST00000471567 PHLPP1O60346 1717 aa21.74■■□□□ 1.07
SDC3-203ENST00000471567 ANKARQ7Z5J8 1434 aa21.73■■□□□ 1.07
SDC3-203ENST00000471567 NHSL1Q5SYE7 1610 aa21.71■■□□□ 1.07
SDC3-203ENST00000471567 COL16A1Q07092 1604 aaPredicted RBP21.7■■□□□ 1.06
SDC3-203ENST00000471567 TULP4Q9NRJ4 1543 aa21.69■■□□□ 1.06
SDC3-203ENST00000471567 CDK19Q9BWU1 502 aa21.68■■□□□ 1.06
SDC3-203ENST00000471567 NPHP3Q7Z494 1330 aa21.68■■□□□ 1.06
SDC3-203ENST00000471567 JCADQ9P266 1359 aa21.68■■□□□ 1.06
SDC3-203ENST00000471567 SOS2Q07890 1332 aaPredicted RBP21.67■■□□□ 1.06
SDC3-203ENST00000471567 DDX17Q92841 729 aaKnown RBP21.67■■□□□ 1.06
SDC3-203ENST00000471567 LRRC59Q96AG4 307 aaKnown RBP21.67■■□□□ 1.06
SDC3-203ENST00000471567 PHF8Q9UPP1 1060 aa21.67■■□□□ 1.06
SDC3-203ENST00000471567 PRR36Q9H6K5 1346 aa21.66■■□□□ 1.06
SDC3-203ENST00000471567 KIF1AQ12756 1690 aa21.66■■□□□ 1.06
SDC3-203ENST00000471567 QRICH2Q9H0J4 1663 aa21.66■■□□□ 1.06
SDC3-203ENST00000471567 USP32Q8NFA0 1604 aa21.66■■□□□ 1.06
SDC3-203ENST00000471567 FOXO3O43524 673 aa21.65■■□□□ 1.06
SDC3-203ENST00000471567 NUDT16Q96DE0 195 aaKnown RBP21.64■■□□□ 1.05
SDC3-203ENST00000471567 RGPD8O14715 1765 aaPredicted RBP21.64■■□□□ 1.05
SDC3-203ENST00000471567 SBNO2Q9Y2G9 1366 aa21.63■■□□□ 1.05
SDC3-203ENST00000471567 EVC2Q86UK5 1308 aa21.62■■□□□ 1.05
SDC3-203ENST00000471567 ATP7BP35670 1465 aa21.61■■□□□ 1.05
SDC3-203ENST00000471567 SRPK2P78362 688 aaKnown RBP21.61■■□□□ 1.05
SDC3-203ENST00000471567 CCDC61Q9Y6R9 512 aa21.61■■□□□ 1.05
SDC3-203ENST00000471567 PXDNQ92626 1479 aa21.6■■□□□ 1.05
SDC3-203ENST00000471567 SPATA31A6Q5VVP1 1343 aa21.59■■□□□ 1.05
SDC3-203ENST00000471567 KRT28Q7Z3Y7 464 aa21.59■■□□□ 1.05
SDC3-203ENST00000471567 PMFBP1Q8TBY8 1022 aa21.59■■□□□ 1.05
SDC3-203ENST00000471567 SLC24A1O60721 1099 aa21.58■■□□□ 1.05
SDC3-203ENST00000471567 PSME1Q06323 249 aa21.58■■□□□ 1.05
SDC3-203ENST00000471567 CABP2Q9NPB3 220 aa21.58■■□□□ 1.05
SDC3-203ENST00000471567 SHPRHQ149N8 1683 aa21.58■■□□□ 1.05
SDC3-203ENST00000471567 PLEKHG3A1L390 1219 aa21.57■■□□□ 1.04
SDC3-203ENST00000471567 ITSN1Q15811 1721 aa21.57■■□□□ 1.04
SDC3-203ENST00000471567 ST20-MTHFSA0A0A6YYL1 179 aa21.56■■□□□ 1.04
SDC3-203ENST00000471567 XPCQ01831 940 aaPredicted RBP21.56■■□□□ 1.04
SDC3-203ENST00000471567 PNPLA6Q8IY17 1366 aa21.56■■□□□ 1.04
SDC3-203ENST00000471567 MED1Q15648 1581 aaPredicted RBP21.56■■□□□ 1.04
SDC3-203ENST00000471567 NGDNQ8NEJ9 315 aaKnown RBP21.55■■□□□ 1.04
SDC3-203ENST00000471567 USP47Q96K76 1375 aa21.55■■□□□ 1.04
SDC3-203ENST00000471567 SBNO1A3KN83 1393 aa21.54■■□□□ 1.04
SDC3-203ENST00000471567 SPATA31A3Q5VYP0 1347 aa21.54■■□□□ 1.04
SDC3-203ENST00000471567 TOPAZ1Q8N9V7 1692 aa21.53■■□□□ 1.04
SDC3-203ENST00000471567 TESK2Q96S53 571 aa21.53■■□□□ 1.04
SDC3-203ENST00000471567 POLR3AO14802 1390 aaPredicted RBP21.52■■□□□ 1.04
SDC3-203ENST00000471567 PUS7Q96PZ0 661 aaKnown RBP21.52■■□□□ 1.04
SDC3-203ENST00000471567 ATAD2Q6PL18 1390 aa21.51■■□□□ 1.03
SDC3-203ENST00000471567 PPIP5K1Q6PFW1 1433 aa21.51■■□□□ 1.03
SDC3-203ENST00000471567 ACEP12821 1306 aa21.51■■□□□ 1.03
SDC3-203ENST00000471567 DISP3Q9P2K9 1392 aa21.49■■□□□ 1.03
SDC3-203ENST00000471567 CABP1Q9NZU7 370 aa21.49■■□□□ 1.03
SDC3-203ENST00000471567 TNS3Q68CZ2 1445 aa21.48■■□□□ 1.03
SDC3-203ENST00000471567 COL22A1Q8NFW1 1626 aaPredicted RBP21.47■■□□□ 1.03
SDC3-203ENST00000471567 NUTM2BA6NNL0 878 aaPredicted RBP21.47■■□□□ 1.03
SDC3-203ENST00000471567 NUTM2EB1AL46 878 aaPredicted RBP21.47■■□□□ 1.03
SDC3-203ENST00000471567 NUTM2AQ8IVF1 878 aaPredicted RBP21.47■■□□□ 1.03
SDC3-203ENST00000471567 ARHGEF10O15013 1369 aa21.47■■□□□ 1.03
SDC3-203ENST00000471567 LRP6O75581 1613 aa21.46■■□□□ 1.03
SDC3-203ENST00000471567 TMF1P82094 1093 aa21.45■■□□□ 1.02
SDC3-203ENST00000471567 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
SDC3-203ENST00000471567 TRPM3Q9HCF6 1732 aaPredicted RBP21.45■■□□□ 1.02
SDC3-203ENST00000471567 BRD4O60885 1362 aaPredicted RBP21.45■■□□□ 1.02
SDC3-203ENST00000471567 EIF4G2P78344 907 aaKnown RBP eCLIP21.44■■□□□ 1.022e-7■■■■■ 37
SDC3-203ENST00000471567 MEX3CQ5U5Q3 659 aaKnown RBP21.44■■□□□ 1.02
SDC3-203ENST00000471567 ZNF692Q9BU19 519 aaPredicted RBP21.43■■□□□ 1.02
SDC3-203ENST00000471567 PAK3O75914 559 aaPredicted RBP21.42■■□□□ 1.02
SDC3-203ENST00000471567 LMOD2Q6P5Q4 547 aa21.42■■□□□ 1.02
SDC3-203ENST00000471567 CDCA8Q53HL2 280 aa21.41■■□□□ 1.02
SDC3-203ENST00000471567 ALS2Q96Q42 1657 aa21.4■■□□□ 1.02
SDC3-203ENST00000471567 USP6P35125 1406 aa21.39■■□□□ 1.02
SDC3-203ENST00000471567 CPSF1Q10570 1443 aaKnown RBP21.38■■□□□ 1.01
SDC3-203ENST00000471567 NINLQ9Y2I6 1382 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms