RNA–Protein interactions for RNA: ENST00000469147.5

TRAPPC12-215, Transcript of trafficking protein particle complex 12, human

TSL 3

Gene TRAPPC12, Length 1,002 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-215	ENST00000469147	CCER1	Q8TC90	406 aa	Predicted RBP	13.84	□□□□□ -0.19
TRAPPC12-215	ENST00000469147	KIAA1210	Q9ULL0	1709 aa		13.84	□□□□□ -0.19
TRAPPC12-215	ENST00000469147	PTCH1	Q13635	1447 aa		13.83	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	STK26	Q9P289	416 aa		13.83	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	TIMELESS	Q9UNS1	1208 aa		13.83	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	BRINP3	Q76B58	766 aa		13.82	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	SPATA31A6	Q5VVP1	1343 aa		13.82	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	LRPPRC	P42704	1394 aa	Known RBP	13.82	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	TECPR2	O15040	1411 aa		13.81	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	MST1R	Q04912	1400 aa		13.81	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	KNDC1	Q76NI1	1749 aa		13.81	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	ADGRB1	O14514	1584 aa		13.8	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	PHLPP1	O60346	1717 aa		13.8	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	ABCC11	Q96J66	1382 aa		13.8	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.8	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	COL16A1	Q07092	1604 aa	Predicted RBP	13.79	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	ADGRL3	Q9HAR2	1447 aa		13.79	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	RXRB	P28702	533 aa		13.78	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	ORAI2	Q96SN7	254 aa		13.78	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	DLC1	Q96QB1	1528 aa		13.78	□□□□□ -0.2
TRAPPC12-215	ENST00000469147	LRRC59	Q96AG4	307 aa	Known RBP	13.77	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	SIRT1	Q96EB6	747 aa		13.77	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	TRPM1	Q7Z4N2	1603 aa		13.76	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	NUTM2F	A1L443	756 aa		13.76	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	C1orf167	Q5SNV9	1468 aa		13.75	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	DCC	P43146	1447 aa		13.75	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	LRP6	O75581	1613 aa		13.74	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	RALGAPB	Q86X10	1494 aa		13.74	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.73	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	C8orf37	Q96NL8	207 aa		13.73	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	GPRASP1	Q5JY77	1395 aa		13.72	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	NGLY1	Q96IV0	654 aa		13.72	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	RGPD8	O14715	1765 aa	Predicted RBP	13.72	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	NHSL1	Q5SYE7	1610 aa		13.72	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	ROCK2	O75116	1388 aa	Known RBP	13.71	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	NBPF1	Q3BBV0	1214 aa		13.71	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	NBPF8	Q3BBV2	869 aa		13.71	□□□□□ -0.21
TRAPPC12-215	ENST00000469147	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	AFF2	P51816	1311 aa		13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	ADAMTS2	O95450	1211 aa		13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	QTRT2	Q9H974	415 aa	Known RBP	13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	TRAK1	Q9UPV9	953 aa		13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	CDC42BPG	Q6DT37	1551 aa		13.7	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	XPC	Q01831	940 aa	Predicted RBP	13.69	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	PRAM1	Q96QH2	718 aa		13.69	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	ADGRB2	O60241	1585 aa		13.67	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.67	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	POGK	Q9P215	609 aa		13.67	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	EIF3A	Q14152	1382 aa	Known RBP	13.67	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	FMN2	Q9NZ56	1722 aa		13.66	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	RBM6	P78332	1123 aa	Known RBP	13.65	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	ESCO1	Q5FWF5	840 aa		13.65	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	CARD11	Q9BXL7	1154 aa		13.65	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	SHPRH	Q149N8	1683 aa		13.65	□□□□□ -0.22
TRAPPC12-215	ENST00000469147	SOS2	Q07890	1332 aa	Predicted RBP	13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	USP32	Q8NFA0	1604 aa		13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	PNPLA6	Q8IY17	1366 aa		13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	FOXO3	O43524	673 aa		13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	PRR36	Q9H6K5	1346 aa		13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.64	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	USP21	Q9UK80	565 aa		13.63	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	PXDN	Q92626	1479 aa		13.62	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	SBNO2	Q9Y2G9	1366 aa		13.61	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	QRICH2	Q9H0J4	1663 aa		13.61	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	HAP1	P54257	671 aa	Predicted RBP	13.61	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	ANKAR	Q7Z5J8	1434 aa		13.6	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	TRPC5	Q9UL62	973 aa	Predicted RBP	13.6	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	PMFBP1	Q8TBY8	1022 aa		13.59	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	TULP4	Q9NRJ4	1543 aa		13.59	□□□□□ -0.23
TRAPPC12-215	ENST00000469147	WASL	O00401	505 aa	Predicted RBP	13.58	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	SLC24A1	O60721	1099 aa		13.58	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	PLEKHG5	O94827	1062 aa		13.58	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	NPHP3	Q7Z494	1330 aa		13.58	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	USP47	Q96K76	1375 aa		13.57	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	LMOD2	Q6P5Q4	547 aa		13.56	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	KRT28	Q7Z3Y7	464 aa		13.56	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	PHF8	Q9UPP1	1060 aa		13.56	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	KIF1A	Q12756	1690 aa		13.56	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	CABLES1	Q8TDN4	633 aa		13.55	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	EVC2	Q86UK5	1308 aa		13.55	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	ITSN1	Q15811	1721 aa		13.54	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	ATP7B	P35670	1465 aa		13.54	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.54	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	CDK19	Q9BWU1	502 aa		13.53	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	CCDC9	Q9Y3X0	531 aa	Known RBP	13.53	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	SPATA31A3	Q5VYP0	1347 aa		13.53	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	ATAD2	Q6PL18	1390 aa		13.53	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.53	□□□□□ -0.24
TRAPPC12-215	ENST00000469147	ST20-MTHFS	A0A0A6YYL1	179 aa		13.52	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	PSME1	Q06323	249 aa		13.52	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	ZRANB1	Q9UGI0	708 aa		13.52	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.51	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	TOPAZ1	Q8N9V7	1692 aa		13.51	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	SRPK2	P78362	688 aa	Known RBP	13.51	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	NUDT16	Q96DE0	195 aa	Known RBP	13.51	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	PUS7	Q96PZ0	661 aa	Known RBP	13.51	□□□□□ -0.25
TRAPPC12-215	ENST00000469147	TESK2	Q96S53	571 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms