RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 DLC1Q96QB1 1528 aa20.78■□□□□ 0.92
SQSTM1-205ENST00000464493 NBPF8Q3BBV2 869 aa20.78■□□□□ 0.92
SQSTM1-205ENST00000464493 POGKQ9P215 609 aa20.78■□□□□ 0.92
SQSTM1-205ENST00000464493 SAFB2Q14151 953 aaKnown RBP eCLIP20.75■□□□□ 0.91
SQSTM1-205ENST00000464493 TIMELESSQ9UNS1 1208 aa20.75■□□□□ 0.91
SQSTM1-205ENST00000464493 TRPM1Q7Z4N2 1603 aa20.75■□□□□ 0.91
SQSTM1-205ENST00000464493 ROCK2O75116 1388 aaKnown RBP20.72■□□□□ 0.91
SQSTM1-205ENST00000464493 MST1RQ04912 1400 aa20.71■□□□□ 0.91
SQSTM1-205ENST00000464493 ROBO1Q9Y6N7 1651 aa20.71■□□□□ 0.91
SQSTM1-205ENST00000464493 HSPA1LP34931 641 aa20.71■□□□□ 0.91
SQSTM1-205ENST00000464493 ARHGEF28Q8N1W1 1705 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-205ENST00000464493 CDC42BPGQ6DT37 1551 aa20.69■□□□□ 0.9
SQSTM1-205ENST00000464493 BRINP3Q76B58 766 aa20.67■□□□□ 0.9
SQSTM1-205ENST00000464493 MINK1Q8N4C8 1332 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-205ENST00000464493 C1orf167Q5SNV9 1468 aa20.67■□□□□ 0.9
SQSTM1-205ENST00000464493 HIRIP3Q9BW71 556 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-205ENST00000464493 GPRASP1Q5JY77 1395 aa20.66■□□□□ 0.9
SQSTM1-205ENST00000464493 RALGAPBQ86X10 1494 aa20.65■□□□□ 0.9
SQSTM1-205ENST00000464493 CARD11Q9BXL7 1154 aa20.65■□□□□ 0.9
SQSTM1-205ENST00000464493 NUTM2FA1L443 756 aa20.64■□□□□ 0.89
SQSTM1-205ENST00000464493 CENPJQ9HC77 1338 aaPredicted RBP20.63■□□□□ 0.89
SQSTM1-205ENST00000464493 ORAI2Q96SN7 254 aa20.63■□□□□ 0.89
SQSTM1-205ENST00000464493 FMN2Q9NZ56 1722 aa20.62■□□□□ 0.89
SQSTM1-205ENST00000464493 ESCO1Q5FWF5 840 aa20.62■□□□□ 0.89
SQSTM1-205ENST00000464493 ADGRB2O60241 1585 aa20.62■□□□□ 0.89
SQSTM1-205ENST00000464493 WASLO00401 505 aaPredicted RBP20.61■□□□□ 0.89
SQSTM1-205ENST00000464493 EIF3AQ14152 1382 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-205ENST00000464493 PHLPP1O60346 1717 aa20.58■□□□□ 0.89
SQSTM1-205ENST00000464493 AHDC1Q5TGY3 1603 aaPredicted RBP20.57■□□□□ 0.88
SQSTM1-205ENST00000464493 CDK19Q9BWU1 502 aa20.57■□□□□ 0.88
SQSTM1-205ENST00000464493 DDX17Q92841 729 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-205ENST00000464493 QRICH2Q9H0J4 1663 aa20.56■□□□□ 0.88
SQSTM1-205ENST00000464493 RGPD8O14715 1765 aaPredicted RBP20.56■□□□□ 0.88
SQSTM1-205ENST00000464493 ANKARQ7Z5J8 1434 aa20.54■□□□□ 0.88
SQSTM1-205ENST00000464493 NHSL1Q5SYE7 1610 aa20.54■□□□□ 0.88
SQSTM1-205ENST00000464493 FOXO3O43524 673 aa20.53■□□□□ 0.88
SQSTM1-205ENST00000464493 PHF8Q9UPP1 1060 aa20.53■□□□□ 0.88
SQSTM1-205ENST00000464493 TULP4Q9NRJ4 1543 aa20.53■□□□□ 0.88
SQSTM1-205ENST00000464493 NUDT16Q96DE0 195 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-205ENST00000464493 COL16A1Q07092 1604 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-205ENST00000464493 USP32Q8NFA0 1604 aa20.52■□□□□ 0.88
SQSTM1-205ENST00000464493 NPHP3Q7Z494 1330 aa20.52■□□□□ 0.87
SQSTM1-205ENST00000464493 PRR36Q9H6K5 1346 aa20.52■□□□□ 0.87
SQSTM1-205ENST00000464493 SRPK2P78362 688 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-205ENST00000464493 LRRC59Q96AG4 307 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-205ENST00000464493 EVC2Q86UK5 1308 aa20.5■□□□□ 0.87
SQSTM1-205ENST00000464493 KIF1AQ12756 1690 aa20.49■□□□□ 0.87
SQSTM1-205ENST00000464493 PMFBP1Q8TBY8 1022 aa20.49■□□□□ 0.87
SQSTM1-205ENST00000464493 CABP2Q9NPB3 220 aa20.49■□□□□ 0.87
SQSTM1-205ENST00000464493 SOS2Q07890 1332 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-205ENST00000464493 JCADQ9P266 1359 aa20.48■□□□□ 0.87
SQSTM1-205ENST00000464493 ST20-MTHFSA0A0A6YYL1 179 aa20.48■□□□□ 0.87
SQSTM1-205ENST00000464493 CCDC61Q9Y6R9 512 aa20.48■□□□□ 0.87
SQSTM1-205ENST00000464493 SBNO2Q9Y2G9 1366 aa20.47■□□□□ 0.87
SQSTM1-205ENST00000464493 ATP7BP35670 1465 aa20.47■□□□□ 0.87
SQSTM1-205ENST00000464493 USP47Q96K76 1375 aa20.46■□□□□ 0.87
SQSTM1-205ENST00000464493 XPCQ01831 940 aaPredicted RBP20.46■□□□□ 0.87
SQSTM1-205ENST00000464493 PSME1Q06323 249 aa20.45■□□□□ 0.86
SQSTM1-205ENST00000464493 KRT28Q7Z3Y7 464 aa20.45■□□□□ 0.86
SQSTM1-205ENST00000464493 ITSN1Q15811 1721 aa20.44■□□□□ 0.86
SQSTM1-205ENST00000464493 NGDNQ8NEJ9 315 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-205ENST00000464493 PXDNQ92626 1479 aa20.43■□□□□ 0.86
SQSTM1-205ENST00000464493 SLC24A1O60721 1099 aa20.43■□□□□ 0.86
SQSTM1-205ENST00000464493 PLEKHG3A1L390 1219 aa20.42■□□□□ 0.86
SQSTM1-205ENST00000464493 TESK2Q96S53 571 aa20.42■□□□□ 0.86
SQSTM1-205ENST00000464493 SHPRHQ149N8 1683 aa20.41■□□□□ 0.86
SQSTM1-205ENST00000464493 SPATA31A6Q5VVP1 1343 aa20.4■□□□□ 0.86
SQSTM1-205ENST00000464493 PPIP5K1Q6PFW1 1433 aa20.4■□□□□ 0.86
SQSTM1-205ENST00000464493 TOPAZ1Q8N9V7 1692 aa20.4■□□□□ 0.86
SQSTM1-205ENST00000464493 CABP1Q9NZU7 370 aa20.39■□□□□ 0.85
SQSTM1-205ENST00000464493 PNPLA6Q8IY17 1366 aa20.38■□□□□ 0.85
SQSTM1-205ENST00000464493 ACEP12821 1306 aa20.38■□□□□ 0.85
SQSTM1-205ENST00000464493 POLR3AO14802 1390 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-205ENST00000464493 ATAD2Q6PL18 1390 aa20.37■□□□□ 0.85
SQSTM1-205ENST00000464493 SPATA31A3Q5VYP0 1347 aa20.37■□□□□ 0.85
SQSTM1-205ENST00000464493 SBNO1A3KN83 1393 aa20.36■□□□□ 0.85
SQSTM1-205ENST00000464493 EIF4G2P78344 907 aaKnown RBP eCLIP20.36■□□□□ 0.85
SQSTM1-205ENST00000464493 PUS7Q96PZ0 661 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-205ENST00000464493 MED1Q15648 1581 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-205ENST00000464493 TMF1P82094 1093 aa20.35■□□□□ 0.85
SQSTM1-205ENST00000464493 NUTM2BA6NNL0 878 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-205ENST00000464493 NUTM2EB1AL46 878 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-205ENST00000464493 NUTM2AQ8IVF1 878 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-205ENST00000464493 PAK3O75914 559 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-205ENST00000464493 LMOD2Q6P5Q4 547 aa20.33■□□□□ 0.85
SQSTM1-205ENST00000464493 TNS3Q68CZ2 1445 aa20.33■□□□□ 0.84
SQSTM1-205ENST00000464493 HSPA5P11021 654 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-205ENST00000464493 TRPM3Q9HCF6 1732 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-205ENST00000464493 TMC1Q8TDI8 760 aa20.31■□□□□ 0.84
SQSTM1-205ENST00000464493 DISP3Q9P2K9 1392 aa20.31■□□□□ 0.84
SQSTM1-205ENST00000464493 COL22A1Q8NFW1 1626 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-205ENST00000464493 CDCA8Q53HL2 280 aa20.3■□□□□ 0.84
SQSTM1-205ENST00000464493 ZNF692Q9BU19 519 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-205ENST00000464493 ARHGEF10O15013 1369 aa20.3■□□□□ 0.84
SQSTM1-205ENST00000464493 LRP6O75581 1613 aa20.3■□□□□ 0.84
SQSTM1-205ENST00000464493 MEX3CQ5U5Q3 659 aaKnown RBP20.29■□□□□ 0.84
SQSTM1-205ENST00000464493 PHF23Q9BUL5 403 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-205ENST00000464493 SLC12A5Q9H2X9 1139 aa20.28■□□□□ 0.84
SQSTM1-205ENST00000464493 ALS2Q96Q42 1657 aa20.26■□□□□ 0.83
SQSTM1-205ENST00000464493 BRD4O60885 1362 aaPredicted RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms