RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 DCCP43146 1447 aa13.75□□□□□ -0.21
PTPRD-207ENST00000463477 HSPA5P11021 654 aaKnown RBP13.75□□□□□ -0.21
PTPRD-207ENST00000463477 YTHDC2Q9H6S0 1430 aaKnown RBP13.74□□□□□ -0.21
PTPRD-207ENST00000463477 HIRIP3Q9BW71 556 aaPredicted RBP13.74□□□□□ -0.21
PTPRD-207ENST00000463477 ADGRL3Q9HAR2 1447 aa13.74□□□□□ -0.21
PTPRD-207ENST00000463477 WAPLQ7Z5K2 1190 aa13.73□□□□□ -0.21
PTPRD-207ENST00000463477 ASXL1Q8IXJ9 1541 aa13.73□□□□□ -0.21
PTPRD-207ENST00000463477 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.72□□□□□ -0.21
PTPRD-207ENST00000463477 WASHC2AQ641Q2 1341 aa13.72□□□□□ -0.21
PTPRD-207ENST00000463477 LAMC1P11047 1609 aa13.71□□□□□ -0.21
PTPRD-207ENST00000463477 NBPF8Q3BBV2 869 aa13.69□□□□□ -0.22
PTPRD-207ENST00000463477 CCDC7Q96M83 1385 aa13.69□□□□□ -0.22
PTPRD-207ENST00000463477 ADGRB1O14514 1584 aa13.69□□□□□ -0.22
PTPRD-207ENST00000463477 BRINP3Q76B58 766 aa13.69□□□□□ -0.22
PTPRD-207ENST00000463477 TRAK1Q9UPV9 953 aa13.69□□□□□ -0.22
PTPRD-207ENST00000463477 MST1RQ04912 1400 aa13.68□□□□□ -0.22
PTPRD-207ENST00000463477 PLEKHH1Q9ULM0 1364 aa13.68□□□□□ -0.22
PTPRD-207ENST00000463477 PRAM1Q96QH2 718 aa13.68□□□□□ -0.22
PTPRD-207ENST00000463477 RALGAPBQ86X10 1494 aa13.67□□□□□ -0.22
PTPRD-207ENST00000463477 POGKQ9P215 609 aa13.67□□□□□ -0.22
PTPRD-207ENST00000463477 KNDC1Q76NI1 1749 aa13.67□□□□□ -0.22
PTPRD-207ENST00000463477 DLC1Q96QB1 1528 aa13.66□□□□□ -0.22
PTPRD-207ENST00000463477 NBPF1Q3BBV0 1214 aa13.66□□□□□ -0.22
PTPRD-207ENST00000463477 ROBO1Q9Y6N7 1651 aa13.66□□□□□ -0.22
PTPRD-207ENST00000463477 NALCNQ8IZF0 1738 aa13.65□□□□□ -0.22
PTPRD-207ENST00000463477 C1orf167Q5SNV9 1468 aa13.65□□□□□ -0.22
PTPRD-207ENST00000463477 SAFB2Q14151 953 aaKnown RBP eCLIP13.63□□□□□ -0.23
PTPRD-207ENST00000463477 ORAI2Q96SN7 254 aa13.63□□□□□ -0.23
PTPRD-207ENST00000463477 KIAA1210Q9ULL0 1709 aa13.63□□□□□ -0.23
PTPRD-207ENST00000463477 SUPT16HQ9Y5B9 1047 aaKnown RBP13.63□□□□□ -0.23
PTPRD-207ENST00000463477 CDC42BPGQ6DT37 1551 aa13.62□□□□□ -0.23
PTPRD-207ENST00000463477 ESCO1Q5FWF5 840 aa13.61□□□□□ -0.23
PTPRD-207ENST00000463477 NUTM2FA1L443 756 aa13.59□□□□□ -0.23
PTPRD-207ENST00000463477 USP47Q96K76 1375 aa13.59□□□□□ -0.23
PTPRD-207ENST00000463477 AHDC1Q5TGY3 1603 aaPredicted RBP13.59□□□□□ -0.23
PTPRD-207ENST00000463477 C11orf95C9JLR9 678 aaPredicted RBP13.59□□□□□ -0.23
PTPRD-207ENST00000463477 KIF7Q2M1P5 1343 aa13.59□□□□□ -0.23
PTPRD-207ENST00000463477 TRPM1Q7Z4N2 1603 aa13.59□□□□□ -0.23
PTPRD-207ENST00000463477 LRRC59Q96AG4 307 aaKnown RBP13.59□□□□□ -0.23
PTPRD-207ENST00000463477 JCADQ9P266 1359 aa13.58□□□□□ -0.24
PTPRD-207ENST00000463477 MINK1Q8N4C8 1332 aaPredicted RBP13.58□□□□□ -0.24
PTPRD-207ENST00000463477 WASLO00401 505 aaPredicted RBP13.58□□□□□ -0.24
PTPRD-207ENST00000463477 DDX17Q92841 729 aaKnown RBP13.58□□□□□ -0.24
PTPRD-207ENST00000463477 SOS2Q07890 1332 aaPredicted RBP13.57□□□□□ -0.24
PTPRD-207ENST00000463477 ROCK2O75116 1388 aaKnown RBP13.57□□□□□ -0.24
PTPRD-207ENST00000463477 PHLPP1O60346 1717 aa13.56□□□□□ -0.24
PTPRD-207ENST00000463477 GPRASP1Q5JY77 1395 aa13.56□□□□□ -0.24
PTPRD-207ENST00000463477 NPHP3Q7Z494 1330 aa13.56□□□□□ -0.24
PTPRD-207ENST00000463477 FOXO3O43524 673 aa13.56□□□□□ -0.24
PTPRD-207ENST00000463477 PRKRIP1Q9H875 184 aaPredicted RBP13.56□□□□□ -0.24
PTPRD-207ENST00000463477 COL16A1Q07092 1604 aaPredicted RBP13.55□□□□□ -0.24
PTPRD-207ENST00000463477 CENPJQ9HC77 1338 aaPredicted RBP13.55□□□□□ -0.24
PTPRD-207ENST00000463477 ANKARQ7Z5J8 1434 aa13.55□□□□□ -0.24
PTPRD-207ENST00000463477 EIF3AQ14152 1382 aaKnown RBP13.55□□□□□ -0.24
PTPRD-207ENST00000463477 DISP3Q9P2K9 1392 aa13.55□□□□□ -0.24
PTPRD-207ENST00000463477 ADGRB2O60241 1585 aa13.54□□□□□ -0.24
PTPRD-207ENST00000463477 PHF8Q9UPP1 1060 aa13.54□□□□□ -0.24
PTPRD-207ENST00000463477 ARHGEF28Q8N1W1 1705 aaKnown RBP13.54□□□□□ -0.24
PTPRD-207ENST00000463477 FMN2Q9NZ56 1722 aa13.54□□□□□ -0.24
PTPRD-207ENST00000463477 SPATA31A6Q5VVP1 1343 aa13.54□□□□□ -0.24
PTPRD-207ENST00000463477 CDK19Q9BWU1 502 aa13.53□□□□□ -0.24
PTPRD-207ENST00000463477 NHSL1Q5SYE7 1610 aa13.53□□□□□ -0.24
PTPRD-207ENST00000463477 CARD11Q9BXL7 1154 aa13.53□□□□□ -0.24
PTPRD-207ENST00000463477 PRR36Q9H6K5 1346 aa13.51□□□□□ -0.25
PTPRD-207ENST00000463477 NUDT16Q96DE0 195 aaKnown RBP13.51□□□□□ -0.25
PTPRD-207ENST00000463477 KRT28Q7Z3Y7 464 aa13.5□□□□□ -0.25
PTPRD-207ENST00000463477 MED1Q15648 1581 aaPredicted RBP13.5□□□□□ -0.25
PTPRD-207ENST00000463477 PSME1Q06323 249 aa13.5□□□□□ -0.25
PTPRD-207ENST00000463477 PMFBP1Q8TBY8 1022 aa13.5□□□□□ -0.25
PTPRD-207ENST00000463477 CCDC61Q9Y6R9 512 aa13.5□□□□□ -0.25
PTPRD-207ENST00000463477 TULP4Q9NRJ4 1543 aa13.49□□□□□ -0.25
PTPRD-207ENST00000463477 PXDNQ92626 1479 aa13.49□□□□□ -0.25
PTPRD-207ENST00000463477 PNPLA6Q8IY17 1366 aa13.49□□□□□ -0.25
PTPRD-207ENST00000463477 XPCQ01831 940 aaPredicted RBP13.49□□□□□ -0.25
PTPRD-207ENST00000463477 KTN1Q86UP2 1357 aaKnown RBP13.48□□□□□ -0.25
PTPRD-207ENST00000463477 USP32Q8NFA0 1604 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 PLEKHG3A1L390 1219 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 RGPD8O14715 1765 aaPredicted RBP13.47□□□□□ -0.25
PTPRD-207ENST00000463477 KIF1AQ12756 1690 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 SHPRHQ149N8 1683 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 EVC2Q86UK5 1308 aa13.47□□□□□ -0.25
PTPRD-207ENST00000463477 SRPK2P78362 688 aaKnown RBP13.47□□□□□ -0.25
PTPRD-207ENST00000463477 SBNO2Q9Y2G9 1366 aa13.46□□□□□ -0.25
PTPRD-207ENST00000463477 NEFLP07196 543 aa13.46□□□□□ -0.26
PTPRD-207ENST00000463477 HNRNPUQ00839 825 aaKnown RBP eCLIP13.46□□□□□ -0.26
PTPRD-207ENST00000463477 NGDNQ8NEJ9 315 aaKnown RBP13.46□□□□□ -0.26
PTPRD-207ENST00000463477 CABP2Q9NPB3 220 aa13.46□□□□□ -0.26
PTPRD-207ENST00000463477 RGS17Q9UGC6 210 aaPredicted RBP13.46□□□□□ -0.26
PTPRD-207ENST00000463477 ATP7BP35670 1465 aa13.46□□□□□ -0.26
PTPRD-207ENST00000463477 SBNO1A3KN83 1393 aa13.45□□□□□ -0.26
PTPRD-207ENST00000463477 NUTM2BA6NNL0 878 aaPredicted RBP13.45□□□□□ -0.26
PTPRD-207ENST00000463477 NUTM2EB1AL46 878 aaPredicted RBP13.45□□□□□ -0.26
PTPRD-207ENST00000463477 SLC24A1O60721 1099 aa13.45□□□□□ -0.26
PTPRD-207ENST00000463477 NUTM2AQ8IVF1 878 aaPredicted RBP13.45□□□□□ -0.26
PTPRD-207ENST00000463477 ZBED9Q6R2W3 1325 aa13.43□□□□□ -0.26
PTPRD-207ENST00000463477 LRP6O75581 1613 aa13.43□□□□□ -0.26
PTPRD-207ENST00000463477 MEX3CQ5U5Q3 659 aaKnown RBP13.43□□□□□ -0.26
PTPRD-207ENST00000463477 MRS2Q9HD23 443 aa13.43□□□□□ -0.26
PTPRD-207ENST00000463477 ACEP12821 1306 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms