RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 ITSN1Q15811 1721 aa9.02□□□□□ -0.96
SF3B1-206ENST00000462613 ROBO2Q9HCK4 1378 aa9.02□□□□□ -0.97
SF3B1-206ENST00000462613 NBPF1Q3BBV0 1214 aa9.02□□□□□ -0.97
SF3B1-206ENST00000462613 PRAM1Q96QH2 718 aa9.02□□□□□ -0.97
SF3B1-206ENST00000462613 CDC42BPGQ6DT37 1551 aa9.02□□□□□ -0.97
SF3B1-206ENST00000462613 SLC24A1O60721 1099 aa9.01□□□□□ -0.97
SF3B1-206ENST00000462613 NBPF8Q3BBV2 869 aa9.01□□□□□ -0.97
SF3B1-206ENST00000462613 RBM33Q96EV2 1170 aaKnown RBP9.01□□□□□ -0.97
SF3B1-206ENST00000462613 CENPJQ9HC77 1338 aaPredicted RBP9.01□□□□□ -0.97
SF3B1-206ENST00000462613 GPRASP1Q5JY77 1395 aa9□□□□□ -0.97
SF3B1-206ENST00000462613 FMN2Q9NZ56 1722 aa9□□□□□ -0.97
SF3B1-206ENST00000462613 ADGRB2O60241 1585 aa9□□□□□ -0.97
SF3B1-206ENST00000462613 RGPD8O14715 1765 aaPredicted RBP9□□□□□ -0.97
SF3B1-206ENST00000462613 SAFB2Q14151 953 aaKnown RBP eCLIP9□□□□□ -0.97
SF3B1-206ENST00000462613 FBXO41Q8TF61 875 aa9□□□□□ -0.97
SF3B1-206ENST00000462613 WAPLQ7Z5K2 1190 aa8.99□□□□□ -0.97
SF3B1-206ENST00000462613 ROBO1Q9Y6N7 1651 aa8.99□□□□□ -0.97
SF3B1-206ENST00000462613 ZEB1P37275 1124 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-206ENST00000462613 PIP4K2BP78356 416 aa8.98□□□□□ -0.97
SF3B1-206ENST00000462613 MINK1Q8N4C8 1332 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-206ENST00000462613 PLEKHH1Q9ULM0 1364 aa8.98□□□□□ -0.97
SF3B1-206ENST00000462613 KIF1AQ12756 1690 aa8.97□□□□□ -0.97
SF3B1-206ENST00000462613 SLAIN2Q9P270 581 aa8.97□□□□□ -0.97
SF3B1-206ENST00000462613 HIRIP3Q9BW71 556 aaPredicted RBP8.96□□□□□ -0.98
SF3B1-206ENST00000462613 EVC2Q86UK5 1308 aa8.96□□□□□ -0.98
SF3B1-206ENST00000462613 PHLPP1O60346 1717 aa8.96□□□□□ -0.98
SF3B1-206ENST00000462613 USP47Q96K76 1375 aa8.96□□□□□ -0.98
SF3B1-206ENST00000462613 SBNO2Q9Y2G9 1366 aa8.96□□□□□ -0.98
SF3B1-206ENST00000462613 MST1RQ04912 1400 aa8.96□□□□□ -0.98
SF3B1-206ENST00000462613 TULP4Q9NRJ4 1543 aa8.95□□□□□ -0.98
SF3B1-206ENST00000462613 WASLO00401 505 aaPredicted RBP8.95□□□□□ -0.98
SF3B1-206ENST00000462613 SRPK2P78362 688 aaKnown RBP8.95□□□□□ -0.98
SF3B1-206ENST00000462613 ANKARQ7Z5J8 1434 aa8.95□□□□□ -0.98
SF3B1-206ENST00000462613 EIF4G2P78344 907 aaKnown RBP eCLIP8.94□□□□□ -0.98
SF3B1-206ENST00000462613 CDCA8Q53HL2 280 aa8.94□□□□□ -0.98
SF3B1-206ENST00000462613 C1orf167Q5SNV9 1468 aa8.94□□□□□ -0.98
SF3B1-206ENST00000462613 NHSL1Q5SYE7 1610 aa8.94□□□□□ -0.98
SF3B1-206ENST00000462613 NUTM2FA1L443 756 aa8.93□□□□□ -0.98
SF3B1-206ENST00000462613 ESCO1Q5FWF5 840 aa8.93□□□□□ -0.98
SF3B1-206ENST00000462613 TOPAZ1Q8N9V7 1692 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 ATAD2Q6PL18 1390 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 NPHP3Q7Z494 1330 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 ST20-MTHFSA0A0A6YYL1 179 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 TMF1P82094 1093 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 CDK19Q9BWU1 502 aa8.92□□□□□ -0.98
SF3B1-206ENST00000462613 AHDC1Q5TGY3 1603 aaPredicted RBP8.91□□□□□ -0.98
SF3B1-206ENST00000462613 USP32Q8NFA0 1604 aa8.91□□□□□ -0.98
SF3B1-206ENST00000462613 BRINP3Q76B58 766 aa8.91□□□□□ -0.98
SF3B1-206ENST00000462613 PHF8Q9UPP1 1060 aa8.91□□□□□ -0.98
SF3B1-206ENST00000462613 CCDC61Q9Y6R9 512 aa8.91□□□□□ -0.98
SF3B1-206ENST00000462613 ATP7BP35670 1465 aa8.9□□□□□ -0.98
SF3B1-206ENST00000462613 NGDNQ8NEJ9 315 aaKnown RBP8.9□□□□□ -0.98
SF3B1-206ENST00000462613 NUDT16Q96DE0 195 aaKnown RBP8.9□□□□□ -0.98
SF3B1-206ENST00000462613 AKAP12Q02952 1782 aa8.89□□□□□ -0.99
SF3B1-206ENST00000462613 PSME1Q06323 249 aa8.89□□□□□ -0.99
SF3B1-206ENST00000462613 PUS7Q96PZ0 661 aaKnown RBP8.89□□□□□ -0.99
SF3B1-206ENST00000462613 ORAI2Q96SN7 254 aa8.89□□□□□ -0.99
SF3B1-206ENST00000462613 CABP2Q9NPB3 220 aa8.89□□□□□ -0.99
SF3B1-206ENST00000462613 PPIP5K1Q6PFW1 1433 aa8.88□□□□□ -0.99
SF3B1-206ENST00000462613 NINLQ9Y2I6 1382 aa8.88□□□□□ -0.99
SF3B1-206ENST00000462613 COL16A1Q07092 1604 aaPredicted RBP8.88□□□□□ -0.99
SF3B1-206ENST00000462613 ILDR1Q86SU0 546 aaPredicted RBP8.88□□□□□ -0.99
SF3B1-206ENST00000462613 LRRC59Q96AG4 307 aaKnown RBP8.88□□□□□ -0.99
SF3B1-206ENST00000462613 SHPRHQ149N8 1683 aa8.88□□□□□ -0.99
SF3B1-206ENST00000462613 FOXO3O43524 673 aa8.87□□□□□ -0.99
SF3B1-206ENST00000462613 HSPA5P11021 654 aaKnown RBP8.87□□□□□ -0.99
SF3B1-206ENST00000462613 HSPA1LP34931 641 aa8.87□□□□□ -0.99
SF3B1-206ENST00000462613 PMFBP1Q8TBY8 1022 aa8.87□□□□□ -0.99
SF3B1-206ENST00000462613 TMC1Q8TDI8 760 aa8.87□□□□□ -0.99
SF3B1-206ENST00000462613 PRR36Q9H6K5 1346 aa8.86□□□□□ -0.99
SF3B1-206ENST00000462613 HDGFL2Q7Z4V5 671 aaPredicted RBP8.86□□□□□ -0.99
SF3B1-206ENST00000462613 TESK2Q96S53 571 aa8.86□□□□□ -0.99
SF3B1-206ENST00000462613 POLR3GLQ9BT43 218 aa8.86□□□□□ -0.99
SF3B1-206ENST00000462613 TERF2IPQ9NYB0 399 aa8.86□□□□□ -0.99
SF3B1-206ENST00000462613 JCADQ9P266 1359 aa8.86□□□□□ -0.99
SF3B1-206ENST00000462613 MON2Q7Z3U7 1717 aa8.85□□□□□ -0.99
SF3B1-206ENST00000462613 PLEKHG3A1L390 1219 aa8.85□□□□□ -0.99
SF3B1-206ENST00000462613 KRT28Q7Z3Y7 464 aa8.85□□□□□ -0.99
SF3B1-206ENST00000462613 ZNF692Q9BU19 519 aaPredicted RBP8.85□□□□□ -0.99
SF3B1-206ENST00000462613 TRPM3Q9HCF6 1732 aaPredicted RBP8.85□□□□□ -0.99
SF3B1-206ENST00000462613 BRD4O60885 1362 aaPredicted RBP8.85□□□□□ -0.99
SF3B1-206ENST00000462613 ACEP12821 1306 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 SOS2Q07890 1332 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-206ENST00000462613 PXDNQ92626 1479 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 PAK3O75914 559 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-206ENST00000462613 HAP1P54257 671 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-206ENST00000462613 LMOD2Q6P5Q4 547 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 CABP1Q9NZU7 370 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 SBNO1A3KN83 1393 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 POLR3AO14802 1390 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-206ENST00000462613 ARHGEF10O15013 1369 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 DISP3Q9P2K9 1392 aa8.84□□□□□ -0.99
SF3B1-206ENST00000462613 MARF1Q9Y4F3 1742 aaKnown RBP8.83□□□□□ -1
SF3B1-206ENST00000462613 TNS3Q68CZ2 1445 aa8.83□□□□□ -1
SF3B1-206ENST00000462613 XPCQ01831 940 aaPredicted RBP8.83□□□□□ -1
SF3B1-206ENST00000462613 ALS2Q96Q42 1657 aa8.83□□□□□ -1
SF3B1-206ENST00000462613 KTN1Q86UP2 1357 aaKnown RBP8.83□□□□□ -1
SF3B1-206ENST00000462613 COL22A1Q8NFW1 1626 aaPredicted RBP8.83□□□□□ -1
SF3B1-206ENST00000462613 SPATA31A6Q5VVP1 1343 aa8.82□□□□□ -1
SF3B1-206ENST00000462613 MYOM1P52179 1685 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms