RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ORAI2Q96SN7 254 aa18.5■□□□□ 0.55
PRPF40A-203ENST00000448428 ADGRB1O14514 1584 aa18.5■□□□□ 0.55
PRPF40A-203ENST00000448428 DDX17Q92841 729 aaKnown RBP18.49■□□□□ 0.55
PRPF40A-203ENST00000448428 JCADQ9P266 1359 aa18.49■□□□□ 0.55
PRPF40A-203ENST00000448428 NHSL1Q5SYE7 1610 aa18.49■□□□□ 0.55
PRPF40A-203ENST00000448428 CDC42BPGQ6DT37 1551 aa18.48■□□□□ 0.55
PRPF40A-203ENST00000448428 PRAM1Q96QH2 718 aa18.48■□□□□ 0.55
PRPF40A-203ENST00000448428 TRAK1Q9UPV9 953 aa18.47■□□□□ 0.55
PRPF40A-203ENST00000448428 SAFB2Q14151 953 aaKnown RBP eCLIP18.46■□□□□ 0.55
PRPF40A-203ENST00000448428 DLC1Q96QB1 1528 aa18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 NUTM2FA1L443 756 aa18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 NEUROD1Q13562 356 aa18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 L3MBTL2Q969R5 705 aa18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 PHF23Q9BUL5 403 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 POGKQ9P215 609 aa18.45■□□□□ 0.54
PRPF40A-203ENST00000448428 ESCO1Q5FWF5 840 aa18.44■□□□□ 0.54
PRPF40A-203ENST00000448428 FMN2Q9NZ56 1722 aa18.43■□□□□ 0.54
PRPF40A-203ENST00000448428 SHPRHQ149N8 1683 aa18.43■□□□□ 0.54
PRPF40A-203ENST00000448428 LRRC59Q96AG4 307 aaKnown RBP18.42■□□□□ 0.54
PRPF40A-203ENST00000448428 KIAA1210Q9ULL0 1709 aa18.42■□□□□ 0.54
PRPF40A-203ENST00000448428 RGPD8O14715 1765 aaPredicted RBP18.42■□□□□ 0.54
PRPF40A-203ENST00000448428 SPATA31A6Q5VVP1 1343 aa18.41■□□□□ 0.54
PRPF40A-203ENST00000448428 NBPF1Q3BBV0 1214 aa18.4■□□□□ 0.54
PRPF40A-203ENST00000448428 RGS17Q9UGC6 210 aaPredicted RBP18.4■□□□□ 0.54
PRPF40A-203ENST00000448428 SOS2Q07890 1332 aaPredicted RBP18.4■□□□□ 0.54
PRPF40A-203ENST00000448428 FOXO3O43524 673 aa18.38■□□□□ 0.53
PRPF40A-203ENST00000448428 HIRIP3Q9BW71 556 aaPredicted RBP18.38■□□□□ 0.53
PRPF40A-203ENST00000448428 ARHGEF28Q8N1W1 1705 aaKnown RBP18.37■□□□□ 0.53
PRPF40A-203ENST00000448428 MINK1Q8N4C8 1332 aaPredicted RBP18.37■□□□□ 0.53
PRPF40A-203ENST00000448428 LRP6O75581 1613 aa18.37■□□□□ 0.53
PRPF40A-203ENST00000448428 NUTM2BA6NNL0 878 aaPredicted RBP18.36■□□□□ 0.53
PRPF40A-203ENST00000448428 NUTM2EB1AL46 878 aaPredicted RBP18.36■□□□□ 0.53
PRPF40A-203ENST00000448428 NUTM2AQ8IVF1 878 aaPredicted RBP18.36■□□□□ 0.53
PRPF40A-203ENST00000448428 ADGRB2O60241 1585 aa18.35■□□□□ 0.53
PRPF40A-203ENST00000448428 PNPLA6Q8IY17 1366 aa18.35■□□□□ 0.53
PRPF40A-203ENST00000448428 NPHP3Q7Z494 1330 aa18.35■□□□□ 0.53
PRPF40A-203ENST00000448428 XPCQ01831 940 aaPredicted RBP18.34■□□□□ 0.53
PRPF40A-203ENST00000448428 PHF8Q9UPP1 1060 aa18.33■□□□□ 0.52
PRPF40A-203ENST00000448428 USP32Q8NFA0 1604 aa18.33■□□□□ 0.52
PRPF40A-203ENST00000448428 PXDNQ92626 1479 aa18.33■□□□□ 0.52
PRPF40A-203ENST00000448428 KIF1AQ12756 1690 aa18.32■□□□□ 0.52
PRPF40A-203ENST00000448428 WASLO00401 505 aaPredicted RBP18.32■□□□□ 0.52
PRPF40A-203ENST00000448428 MEX3CQ5U5Q3 659 aaKnown RBP18.32■□□□□ 0.52
PRPF40A-203ENST00000448428 POTEAQ6S8J7 498 aa18.31■□□□□ 0.52
PRPF40A-203ENST00000448428 TRPM1Q7Z4N2 1603 aa18.31■□□□□ 0.52
PRPF40A-203ENST00000448428 ANKARQ7Z5J8 1434 aa18.3■□□□□ 0.52
PRPF40A-203ENST00000448428 PRR36Q9H6K5 1346 aa18.29■□□□□ 0.52
PRPF40A-203ENST00000448428 SOCS7O14512 581 aa18.29■□□□□ 0.52
PRPF40A-203ENST00000448428 NBPF8Q3BBV2 869 aa18.29■□□□□ 0.52
PRPF40A-203ENST00000448428 KRT28Q7Z3Y7 464 aa18.29■□□□□ 0.52
PRPF40A-203ENST00000448428 PMFBP1Q8TBY8 1022 aa18.28■□□□□ 0.52
PRPF40A-203ENST00000448428 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.52
PRPF40A-203ENST00000448428 TULP4Q9NRJ4 1543 aa18.27■□□□□ 0.51
PRPF40A-203ENST00000448428 EIF3AQ14152 1382 aaKnown RBP18.27■□□□□ 0.51
PRPF40A-203ENST00000448428 CDK19Q9BWU1 502 aa18.26■□□□□ 0.51
PRPF40A-203ENST00000448428 COL22A1Q8NFW1 1626 aaPredicted RBP18.26■□□□□ 0.51
PRPF40A-203ENST00000448428 TONSLQ96HA7 1378 aa18.26■□□□□ 0.51
PRPF40A-203ENST00000448428 SPATA31A3Q5VYP0 1347 aa18.25■□□□□ 0.51
PRPF40A-203ENST00000448428 ADAMTS2O95450 1211 aa18.25■□□□□ 0.51
PRPF40A-203ENST00000448428 PSME1Q06323 249 aa18.25■□□□□ 0.51
PRPF40A-203ENST00000448428 NUDT16Q96DE0 195 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-203ENST00000448428 CENPJQ9HC77 1338 aaPredicted RBP18.24■□□□□ 0.51
PRPF40A-203ENST00000448428 ROCK2O75116 1388 aaKnown RBP18.24■□□□□ 0.51
PRPF40A-203ENST00000448428 ZNF772Q68DY9 489 aaPredicted RBP18.23■□□□□ 0.51
PRPF40A-203ENST00000448428 C8orf37Q96NL8 207 aa18.23■□□□□ 0.51
PRPF40A-203ENST00000448428 AFF2P51816 1311 aa18.22■□□□□ 0.51
PRPF40A-203ENST00000448428 QRICH2Q9H0J4 1663 aa18.22■□□□□ 0.51
PRPF40A-203ENST00000448428 ITSN1Q15811 1721 aa18.2■□□□□ 0.5
PRPF40A-203ENST00000448428 ATP7BP35670 1465 aa18.2■□□□□ 0.5
PRPF40A-203ENST00000448428 SBNO1A3KN83 1393 aa18.2■□□□□ 0.5
PRPF40A-203ENST00000448428 NGDNQ8NEJ9 315 aaKnown RBP18.2■□□□□ 0.5
PRPF40A-203ENST00000448428 NGLY1Q96IV0 654 aa18.2■□□□□ 0.5
PRPF40A-203ENST00000448428 GPRASP1Q5JY77 1395 aa18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 TRPM3Q9HCF6 1732 aaPredicted RBP18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 TNS3Q68CZ2 1445 aa18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 LMOD2Q6P5Q4 547 aa18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 CCDC61Q9Y6R9 512 aa18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 MARF1Q9Y4F3 1742 aaKnown RBP18.18■□□□□ 0.5
PRPF40A-203ENST00000448428 SRPK2P78362 688 aaKnown RBP18.17■□□□□ 0.5
PRPF40A-203ENST00000448428 CABP2Q9NPB3 220 aa18.17■□□□□ 0.5
PRPF40A-203ENST00000448428 CABLES1Q8TDN4 633 aa18.16■□□□□ 0.5
PRPF40A-203ENST00000448428 CARD11Q9BXL7 1154 aa18.16■□□□□ 0.5
PRPF40A-203ENST00000448428 TOPAZ1Q8N9V7 1692 aa18.15■□□□□ 0.5
PRPF40A-203ENST00000448428 PLEKHG3A1L390 1219 aa18.15■□□□□ 0.5
PRPF40A-203ENST00000448428 PLEKHG5O94827 1062 aa18.15■□□□□ 0.5
PRPF40A-203ENST00000448428 QTRT2Q9H974 415 aaKnown RBP18.15■□□□□ 0.5
PRPF40A-203ENST00000448428 RALGAPBQ86X10 1494 aa18.14■□□□□ 0.5
PRPF40A-203ENST00000448428 FNBP4Q8N3X1 1017 aaPredicted RBP18.14■□□□□ 0.49
PRPF40A-203ENST00000448428 ALS2Q96Q42 1657 aa18.14■□□□□ 0.49
PRPF40A-203ENST00000448428 ACEP12821 1306 aa18.14■□□□□ 0.49
PRPF40A-203ENST00000448428 ARHGEF10O15013 1369 aa18.14■□□□□ 0.49
PRPF40A-203ENST00000448428 RXRBP28702 533 aa18.13■□□□□ 0.49
PRPF40A-203ENST00000448428 USP21Q9UK80 565 aa18.13■□□□□ 0.49
PRPF40A-203ENST00000448428 POLR3AO14802 1390 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-203ENST00000448428 PAK3O75914 559 aaPredicted RBP18.12■□□□□ 0.49
PRPF40A-203ENST00000448428 EVC2Q86UK5 1308 aa18.12■□□□□ 0.49
PRPF40A-203ENST00000448428 HAP1P54257 671 aaPredicted RBP18.11■□□□□ 0.49
PRPF40A-203ENST00000448428 ABCA3Q99758 1704 aa18.1■□□□□ 0.49
PRPF40A-203ENST00000448428 PPIP5K1Q6PFW1 1433 aa18.1■□□□□ 0.49
PRPF40A-203ENST00000448428 CLSPNQ9HAW4 1339 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms