RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SYMPKQ92797 1274 aaKnown RBP7.76□□□□□ -1.17
VPS41-207ENST00000439468 TBC1D2Q9BYX2 928 aa7.76□□□□□ -1.17
VPS41-207ENST00000439468 FCF1Q9Y324 198 aaKnown RBP7.76□□□□□ -1.17
VPS41-207ENST00000439468 V9GY48 417 aaPredicted RBP7.76□□□□□ -1.17
VPS41-207ENST00000439468 DIXDC1Q155Q3 683 aa7.75□□□□□ -1.17
VPS41-207ENST00000439468 MSS51Q4VC12 460 aa7.75□□□□□ -1.17
VPS41-207ENST00000439468 CSPP1Q1MSJ5 1256 aa7.73□□□□□ -1.17
VPS41-207ENST00000439468 PLA2G2CQ5R387 149 aa7.73□□□□□ -1.17
VPS41-207ENST00000439468 CCDC24Q8N4L8 307 aa7.73□□□□□ -1.17
VPS41-207ENST00000439468 GPBP1L1Q9HC44 474 aaPredicted RBP7.73□□□□□ -1.17
VPS41-207ENST00000439468 PCDHGC3Q9UN70 934 aa7.73□□□□□ -1.17
VPS41-207ENST00000439468 RETREG3Q86VR2 466 aa7.72□□□□□ -1.17
VPS41-207ENST00000439468 ATP1B4Q9UN42 357 aaPredicted RBP7.72□□□□□ -1.17
VPS41-207ENST00000439468 ZBTB24O43167 697 aaPredicted RBP7.71□□□□□ -1.18
VPS41-207ENST00000439468 LIAT1Q6ZQX7 453 aa7.71□□□□□ -1.18
VPS41-207ENST00000439468 GFRA3O60609 400 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 MTMR2Q13614 643 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 ZNF697Q5TEC3 545 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 SPRYD7Q5W111 196 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 RSBN1LQ6PCB5 846 aaPredicted RBP7.7□□□□□ -1.18
VPS41-207ENST00000439468 RIC3Q7Z5B4 369 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 EMID1Q96A84 441 aaPredicted RBP7.7□□□□□ -1.18
VPS41-207ENST00000439468 KDM4CQ9H3R0 1056 aa7.7□□□□□ -1.18
VPS41-207ENST00000439468 DXOO77932 396 aaKnown RBP7.69□□□□□ -1.18
VPS41-207ENST00000439468 JUNDP17535 347 aa7.69□□□□□ -1.18
VPS41-207ENST00000439468 MMP16P51512 607 aa7.69□□□□□ -1.18
VPS41-207ENST00000439468 PDZRN3Q9UPQ7 1066 aa7.69□□□□□ -1.18
VPS41-207ENST00000439468 NEUROD2Q15784 382 aa7.68□□□□□ -1.18
VPS41-207ENST00000439468 MYSM1Q5VVJ2 828 aa7.68□□□□□ -1.18
VPS41-207ENST00000439468 Q6ZNB5 142 aa7.68□□□□□ -1.18
VPS41-207ENST00000439468 ZNF598Q86UK7 904 aaKnown RBP7.68□□□□□ -1.18
VPS41-207ENST00000439468 PRR7Q8TB68 274 aa7.68□□□□□ -1.18
VPS41-207ENST00000439468 TSC1Q92574 1164 aa7.68□□□□□ -1.18
VPS41-207ENST00000439468 NUTM2BA6NNL0 878 aaPredicted RBP7.67□□□□□ -1.18
VPS41-207ENST00000439468 NUTM2EB1AL46 878 aaPredicted RBP7.67□□□□□ -1.18
VPS41-207ENST00000439468 SPTLC1O15269 473 aa7.67□□□□□ -1.18
VPS41-207ENST00000439468 LAPTM4AQ15012 233 aa7.67□□□□□ -1.18
VPS41-207ENST00000439468 NUTM2DQ5VT03 806 aaPredicted RBP7.67□□□□□ -1.18
VPS41-207ENST00000439468 NUTM2AQ8IVF1 878 aaPredicted RBP7.67□□□□□ -1.18
VPS41-207ENST00000439468 RSPH6AQ9H0K4 717 aa7.67□□□□□ -1.18
VPS41-207ENST00000439468 ZBTB3Q9H5J0 574 aa7.67□□□□□ -1.18
VPS41-207ENST00000439468 PCDHB15Q9Y5E8 787 aa7.67□□□□□ -1.18
VPS41-207ENST00000439468 SPDYE5A6NIY4 337 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 CD2BP2O95400 341 aaKnown RBP7.66□□□□□ -1.18
VPS41-207ENST00000439468 GJA5P36382 358 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 RPIAP49247 311 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 FOXC1Q12948 553 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 CABLES1Q8TDN4 633 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 NUDT12Q9BQG2 462 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 POLR3EQ9NVU0 708 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 LIMD1Q9UGP4 676 aa7.66□□□□□ -1.18
VPS41-207ENST00000439468 TNFRSF10AO00220 468 aa7.65□□□□□ -1.18
VPS41-207ENST00000439468 NRG2O14511 850 aaPredicted RBP7.65□□□□□ -1.18
VPS41-207ENST00000439468 HRCP23327 699 aa7.65□□□□□ -1.18
VPS41-207ENST00000439468 CLK2P49760 499 aaKnown RBP7.65□□□□□ -1.18
VPS41-207ENST00000439468 DDRGK1Q96HY6 314 aa7.65□□□□□ -1.18
VPS41-207ENST00000439468 FAM117AQ9C073 453 aa7.65□□□□□ -1.18
VPS41-207ENST00000439468 CCNYL3P0C7X3 344 aa7.63□□□□□ -1.19
VPS41-207ENST00000439468 TRIM32Q13049 653 aa7.63□□□□□ -1.19
VPS41-207ENST00000439468 CFAP99D6REC4 459 aa7.62□□□□□ -1.19
VPS41-207ENST00000439468 QPCTQ16769 361 aa7.62□□□□□ -1.19
VPS41-207ENST00000439468 PRPF38BQ5VTL8 546 aaKnown RBP7.62□□□□□ -1.19
VPS41-207ENST00000439468 CTHP32929 405 aa7.61□□□□□ -1.19
VPS41-207ENST00000439468 PTPRNQ16849 979 aa7.61□□□□□ -1.19
VPS41-207ENST00000439468 TRIM67Q6ZTA4 783 aa7.61□□□□□ -1.19
VPS41-207ENST00000439468 FAM187AA6NFU0 413 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 BRPF1P55201 1214 aaPredicted RBP7.59□□□□□ -1.19
VPS41-207ENST00000439468 PRR20EP86478 221 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 PRR20CP86479 221 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 PRR20DP86480 221 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 PRR20BP86481 221 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 PRR20AP86496 221 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 SKIV2LQ15477 1246 aaKnown RBP7.59□□□□□ -1.19
VPS41-207ENST00000439468 PKDCCQ504Y2 493 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 SH3D19Q5HYK7 790 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 DESI1Q6ICB0 168 aa7.59□□□□□ -1.19
VPS41-207ENST00000439468 HELBQ8NG08 1087 aaPredicted RBP7.59□□□□□ -1.19
VPS41-207ENST00000439468 PLEKHG3A1L390 1219 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 GDF9O60383 454 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 LILRB3O75022 631 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 TUSC1Q2TAM9 212 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 PTCRAQ6ISU1 281 aaPredicted RBP7.58□□□□□ -1.2
VPS41-207ENST00000439468 CYP4X1Q8N118 509 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 IL27Q8NEV9 243 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 PKD2L1Q9P0L9 805 aa7.58□□□□□ -1.2
VPS41-207ENST00000439468 KCNH2Q12809 1159 aa7.57□□□□□ -1.2
VPS41-207ENST00000439468 LINC01559Q495D7 138 aa7.57□□□□□ -1.2
VPS41-207ENST00000439468 RTL5Q5HYW3 569 aaPredicted RBP7.57□□□□□ -1.2
VPS41-207ENST00000439468 PROCA1Q8NCQ7 364 aaPredicted RBP7.57□□□□□ -1.2
VPS41-207ENST00000439468 UNC93B1Q9H1C4 597 aa7.57□□□□□ -1.2
VPS41-207ENST00000439468 TTC24A2A3L6 582 aaPredicted RBP7.56□□□□□ -1.2
VPS41-207ENST00000439468 LYPD8Q6UX82 237 aa7.56□□□□□ -1.2
VPS41-207ENST00000439468 EVA1BQ9NVM1 165 aa7.56□□□□□ -1.2
VPS41-207ENST00000439468 WNT7AO00755 349 aa7.55□□□□□ -1.2
VPS41-207ENST00000439468 WNT7BP56706 349 aa7.55□□□□□ -1.2
VPS41-207ENST00000439468 RC3H1Q5TC82 1133 aaKnown RBP7.55□□□□□ -1.2
VPS41-207ENST00000439468 MAP10Q9P2G4 905 aa7.55□□□□□ -1.2
VPS41-207ENST00000439468 PER1O15534 1290 aaPredicted RBP7.54□□□□□ -1.2
VPS41-207ENST00000439468 SKOR1P84550 965 aa7.54□□□□□ -1.2
VPS41-207ENST00000439468 TRAF7Q6Q0C0 670 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms