RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 CFAP53Q96M91 514 aa13.61□□□□□ -0.23
CD44-210ENST00000434472 CFAP65Q6ZU64 1925 aaKnown RBP13.61□□□□□ -0.23
CD44-210ENST00000434472 TMEM132EQ6IEE7 984 aa13.61□□□□□ -0.23
CD44-210ENST00000434472 CENPQQ7L2Z9 268 aaPredicted RBP13.61□□□□□ -0.23
CD44-210ENST00000434472 ANKRD36BQ8N2N9 1353 aa13.61□□□□□ -0.23
CD44-210ENST00000434472 ARHGEF28Q8N1W1 1705 aaKnown RBP13.6□□□□□ -0.23
CD44-210ENST00000434472 PDE4AP27815 886 aa13.6□□□□□ -0.23
CD44-210ENST00000434472 SLC12A5Q9H2X9 1139 aa13.6□□□□□ -0.23
CD44-210ENST00000434472 RUNDC1Q96C34 613 aa13.59□□□□□ -0.23
CD44-210ENST00000434472 IDI1Q13907 227 aa13.58□□□□□ -0.24
CD44-210ENST00000434472 BACH2Q9BYV9 841 aa13.58□□□□□ -0.24
CD44-210ENST00000434472 TULP4Q9NRJ4 1543 aa13.58□□□□□ -0.24
CD44-210ENST00000434472 KDM2BQ8NHM5 1336 aa13.58□□□□□ -0.24
CD44-210ENST00000434472 ZBTB47Q9UFB7 747 aaPredicted RBP13.57□□□□□ -0.24
CD44-210ENST00000434472 PPP6R1Q9UPN7 881 aa13.57□□□□□ -0.24
CD44-210ENST00000434472 YEATS2Q9ULM3 1422 aa13.57□□□□□ -0.24
CD44-210ENST00000434472 PREX1Q8TCU6 1659 aa13.57□□□□□ -0.24
CD44-210ENST00000434472 C20orf194Q5TEA3 1177 aa13.57□□□□□ -0.24
CD44-210ENST00000434472 SHPRHQ149N8 1683 aa13.56□□□□□ -0.24
CD44-210ENST00000434472 PDE3AQ14432 1141 aa13.55□□□□□ -0.24
CD44-210ENST00000434472 WDR63Q8IWG1 891 aa13.55□□□□□ -0.24
CD44-210ENST00000434472 WWC1Q8IX03 1113 aa13.55□□□□□ -0.24
CD44-210ENST00000434472 TMEM131LA2VDJ0 1609 aa13.55□□□□□ -0.24
CD44-210ENST00000434472 ATAD2Q6PL18 1390 aa13.55□□□□□ -0.24
CD44-210ENST00000434472 CCDC27Q2M243 656 aa13.54□□□□□ -0.24
CD44-210ENST00000434472 REREQ9P2R6 1566 aa13.54□□□□□ -0.24
CD44-210ENST00000434472 IQSEC2Q5JU85 1478 aa13.54□□□□□ -0.24
CD44-210ENST00000434472 SPINK5Q9NQ38 1064 aaPredicted RBP13.53□□□□□ -0.24
CD44-210ENST00000434472 MTHFSP49914 203 aa13.53□□□□□ -0.24
CD44-210ENST00000434472 AAMPQ13685 434 aa13.53□□□□□ -0.24
CD44-210ENST00000434472 AGLP35573 1532 aa13.53□□□□□ -0.24
CD44-210ENST00000434472 NUTM2DQ5VT03 806 aaPredicted RBP13.52□□□□□ -0.25
CD44-210ENST00000434472 PHF23Q9BUL5 403 aaPredicted RBP13.52□□□□□ -0.25
CD44-210ENST00000434472 ABCC11Q96J66 1382 aa13.52□□□□□ -0.25
CD44-210ENST00000434472 TCP11L2Q8N4U5 519 aa13.51□□□□□ -0.25
CD44-210ENST00000434472 TERF2IPQ9NYB0 399 aa13.51□□□□□ -0.25
CD44-210ENST00000434472 MED14O60244 1454 aa13.51□□□□□ -0.25
CD44-210ENST00000434472 CLTCQ00610 1675 aaKnown RBP13.51□□□□□ -0.25
CD44-210ENST00000434472 PTPRMP28827 1452 aa13.5□□□□□ -0.25
CD44-210ENST00000434472 TNNT2P45379 298 aaPredicted RBP13.5□□□□□ -0.25
CD44-210ENST00000434472 DDRGK1Q96HY6 314 aa13.5□□□□□ -0.25
CD44-210ENST00000434472 CABP2Q9NPB3 220 aa13.5□□□□□ -0.25
CD44-210ENST00000434472 YTHDC2Q9H6S0 1430 aaKnown RBP13.5□□□□□ -0.25
CD44-210ENST00000434472 BCAR3O75815 825 aa13.5□□□□□ -0.25
CD44-210ENST00000434472 PAK3O75914 559 aaPredicted RBP13.5□□□□□ -0.25
CD44-210ENST00000434472 SRPK2P78362 688 aaKnown RBP13.5□□□□□ -0.25
CD44-210ENST00000434472 POGKQ9P215 609 aa13.5□□□□□ -0.25
CD44-210ENST00000434472 MYH16Q9H6N6 1097 aa13.49□□□□□ -0.25
CD44-210ENST00000434472 A0A1W2PP64 1363 aa13.48□□□□□ -0.25
CD44-210ENST00000434472 CANXP27824 592 aaKnown RBP13.48□□□□□ -0.25
CD44-210ENST00000434472 STK26Q9P289 416 aa13.48□□□□□ -0.25
CD44-210ENST00000434472 MYO5BQ9ULV0 1848 aa13.48□□□□□ -0.25
CD44-210ENST00000434472 DIP2BQ9P265 1576 aa13.48□□□□□ -0.25
CD44-210ENST00000434472 ALKQ9UM73 1620 aa13.48□□□□□ -0.25
CD44-210ENST00000434472 FAM69CQ0P6D2 419 aa13.47□□□□□ -0.25
CD44-210ENST00000434472 HDGFL2Q7Z4V5 671 aaPredicted RBP13.47□□□□□ -0.25
CD44-210ENST00000434472 NPM2Q86SE8 214 aaKnown RBP13.47□□□□□ -0.25
CD44-210ENST00000434472 STAG3Q9UJ98 1225 aa13.47□□□□□ -0.25
CD44-210ENST00000434472 DMRT2Q9Y5R5 561 aa13.47□□□□□ -0.25
CD44-210ENST00000434472 DLC1Q96QB1 1528 aa13.47□□□□□ -0.25
CD44-210ENST00000434472 ANKRD26Q9UPS8 1709 aa13.47□□□□□ -0.25
CD44-210ENST00000434472 CT47B1P0C2W7 299 aaPredicted RBP13.46□□□□□ -0.25
CD44-210ENST00000434472 FAM161AQ3B820 660 aa13.46□□□□□ -0.25
CD44-210ENST00000434472 CYB5RLQ6IPT4 315 aa13.46□□□□□ -0.25
CD44-210ENST00000434472 PRAM1Q96QH2 718 aa13.46□□□□□ -0.25
CD44-210ENST00000434472 PNNQ9H307 717 aaKnown RBP13.46□□□□□ -0.25
CD44-210ENST00000434472 ADGRB2O60241 1585 aa13.46□□□□□ -0.25
CD44-210ENST00000434472 U2AF1L5P0DN76 240 aaPredicted RBP13.46□□□□□ -0.26
CD44-210ENST00000434472 U2AF1Q01081 240 aaKnown RBP eCLIP13.46□□□□□ -0.26
CD44-210ENST00000434472 RARSP54136 660 aaKnown RBP13.45□□□□□ -0.26
CD44-210ENST00000434472 SAFB2Q14151 953 aaKnown RBP eCLIP13.45□□□□□ -0.26
CD44-210ENST00000434472 NEUROD2Q15784 382 aa13.44□□□□□ -0.26
CD44-210ENST00000434472 FBXO31Q5XUX0 539 aaPredicted RBP13.44□□□□□ -0.26
CD44-210ENST00000434472 CLUAP1Q96AJ1 413 aa13.44□□□□□ -0.26
CD44-210ENST00000434472 RRP7AQ9Y3A4 280 aaKnown RBP13.44□□□□□ -0.26
CD44-210ENST00000434472 SPATA31D1Q6ZQQ2 1576 aa13.44□□□□□ -0.26
CD44-210ENST00000434472 MINK1Q8N4C8 1332 aaPredicted RBP13.44□□□□□ -0.26
CD44-210ENST00000434472 RIMBP3CA6NJZ7 1639 aa13.43□□□□□ -0.26
CD44-210ENST00000434472 RIMBP3BA6NNM3 1639 aa13.43□□□□□ -0.26
CD44-210ENST00000434472 RIMBP3Q9UFD9 1639 aa13.43□□□□□ -0.26
CD44-210ENST00000434472 PMFBP1Q8TBY8 1022 aa13.43□□□□□ -0.26
CD44-210ENST00000434472 ARHGEF40Q8TER5 1519 aa13.43□□□□□ -0.26
CD44-210ENST00000434472 CDK19Q9BWU1 502 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 IL16Q14005 1332 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 A2ML1A8K2U0 1454 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 COL3A1P02461 1466 aaPredicted RBP13.42□□□□□ -0.26
CD44-210ENST00000434472 FYB1O15117 783 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 RTL5Q5HYW3 569 aaPredicted RBP13.42□□□□□ -0.26
CD44-210ENST00000434472 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.42□□□□□ -0.26
CD44-210ENST00000434472 MAPK8IP3Q9UPT6 1336 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 RIMS2Q9UQ26 1411 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 CD163L1Q9NR16 1453 aa13.42□□□□□ -0.26
CD44-210ENST00000434472 PPM1GO15355 546 aaPredicted RBP13.41□□□□□ -0.26
CD44-210ENST00000434472 GGNBP2Q9H3C7 697 aa13.41□□□□□ -0.26
CD44-210ENST00000434472 ATP7BP35670 1465 aa13.4□□□□□ -0.26
CD44-210ENST00000434472 NLRP1Q9C000 1473 aa13.4□□□□□ -0.26
CD44-210ENST00000434472 ZMYM3Q14202 1370 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 FRAT1Q92837 279 aaPredicted RBP13.39□□□□□ -0.27
CD44-210ENST00000434472 PLEKHF1Q96S99 279 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 COG6Q9Y2V7 657 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms