RNA–Protein interactions for RNA: ENST00000427299.6

LINC00458-202, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,030 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-202ENST00000427299 POTECB2RU33 542 aa12.17□□□□□ -0.46
LINC00458-202ENST00000427299 MMP16P51512 607 aa12.17□□□□□ -0.46
LINC00458-202ENST00000427299 AAASQ9NRG9 546 aa12.17□□□□□ -0.46
LINC00458-202ENST00000427299 ST8SIA5O15466 376 aa12.16□□□□□ -0.46
LINC00458-202ENST00000427299 USP46P62068 366 aa12.15□□□□□ -0.46
LINC00458-202ENST00000427299 HLA-CQ95604 372 aa12.15□□□□□ -0.46
LINC00458-202ENST00000427299 USB1Q9BQ65 265 aaKnown RBP12.14□□□□□ -0.47
LINC00458-202ENST00000427299 HOXA2O43364 376 aa12.13□□□□□ -0.47
LINC00458-202ENST00000427299 DXOO77932 396 aaKnown RBP12.13□□□□□ -0.47
LINC00458-202ENST00000427299 CRIPAKQ8N1N5 446 aa12.13□□□□□ -0.47
LINC00458-202ENST00000427299 ZBTB24O43167 697 aaPredicted RBP12.12□□□□□ -0.47
LINC00458-202ENST00000427299 AVPP01185 164 aa12.12□□□□□ -0.47
LINC00458-202ENST00000427299 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
LINC00458-202ENST00000427299 CLCN1P35523 988 aa12.11□□□□□ -0.47
LINC00458-202ENST00000427299 CYP4X1Q8N118 509 aa12.11□□□□□ -0.47
LINC00458-202ENST00000427299 FAM217BQ9NTX9 383 aaPredicted RBP12.11□□□□□ -0.47
LINC00458-202ENST00000427299 TRIM32Q13049 653 aa12.1□□□□□ -0.47
LINC00458-202ENST00000427299 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.1□□□□□ -0.47
LINC00458-202ENST00000427299 WNT7AO00755 349 aa12.08□□□□□ -0.48
LINC00458-202ENST00000427299 GUCA2AQ02747 115 aa12.07□□□□□ -0.48
LINC00458-202ENST00000427299 CTC1Q2NKJ3 1217 aa12.05□□□□□ -0.48
LINC00458-202ENST00000427299 DACH1Q9UI36 760 aa12.05□□□□□ -0.48
LINC00458-202ENST00000427299 REPIN1Q9BWE0 567 aaKnown RBP12.04□□□□□ -0.48
LINC00458-202ENST00000427299 TTC24A2A3L6 582 aaPredicted RBP12.03□□□□□ -0.48
LINC00458-202ENST00000427299 SMCPP49901 116 aaPredicted RBP12.03□□□□□ -0.48
LINC00458-202ENST00000427299 MRGPRX2Q96LB1 330 aa12.03□□□□□ -0.48
LINC00458-202ENST00000427299 AXIN1O15169 862 aa12.02□□□□□ -0.49
LINC00458-202ENST00000427299 SMPD1P17405 629 aa12.02□□□□□ -0.49
LINC00458-202ENST00000427299 SNIP1Q8TAD8 396 aaKnown RBP12.02□□□□□ -0.49
LINC00458-202ENST00000427299 JUNDP17535 347 aa12.01□□□□□ -0.49
LINC00458-202ENST00000427299 SYMPKQ92797 1274 aaKnown RBP12.01□□□□□ -0.49
LINC00458-202ENST00000427299 NUTM1Q86Y26 1132 aa12□□□□□ -0.49
LINC00458-202ENST00000427299 CCDC24Q8N4L8 307 aa12□□□□□ -0.49
LINC00458-202ENST00000427299 KRI1Q8N9T8 703 aaKnown RBP12□□□□□ -0.49
LINC00458-202ENST00000427299 SKOR1P84550 965 aa11.98□□□□□ -0.49
LINC00458-202ENST00000427299 RETREG3Q86VR2 466 aa11.98□□□□□ -0.49
LINC00458-202ENST00000427299 PCDHGC3Q9UN70 934 aa11.98□□□□□ -0.49
LINC00458-202ENST00000427299 BARGINQ6ZT62 677 aa11.97□□□□□ -0.49
LINC00458-202ENST00000427299 GMPR2Q9P2T1 348 aaKnown RBP11.97□□□□□ -0.49
LINC00458-202ENST00000427299 J3QL48 77 aa11.96□□□□□ -0.49
LINC00458-202ENST00000427299 ZMYND10O75800 440 aa11.96□□□□□ -0.49
LINC00458-202ENST00000427299 FDX1P10109 184 aa11.96□□□□□ -0.49
LINC00458-202ENST00000427299 SSTR3P32745 418 aaPredicted RBP11.96□□□□□ -0.49
LINC00458-202ENST00000427299 WNT7BP56706 349 aa11.96□□□□□ -0.49
LINC00458-202ENST00000427299 LCE2AQ5TA79 106 aaPredicted RBP11.95□□□□□ -0.5
LINC00458-202ENST00000427299 RC3H1Q5TC82 1133 aaKnown RBP11.95□□□□□ -0.5
LINC00458-202ENST00000427299 TREML4Q6UXN2 200 aa11.95□□□□□ -0.5
LINC00458-202ENST00000427299 AMHR2Q16671 573 aa11.94□□□□□ -0.5
LINC00458-202ENST00000427299 SPIRE2Q8WWL2 714 aa11.94□□□□□ -0.5
LINC00458-202ENST00000427299 NUDT12Q9BQG2 462 aa11.93□□□□□ -0.5
LINC00458-202ENST00000427299 C11orf95C9JLR9 678 aaPredicted RBP11.92□□□□□ -0.5
LINC00458-202ENST00000427299 PTCRAQ6ISU1 281 aaPredicted RBP11.92□□□□□ -0.5
LINC00458-202ENST00000427299 C6orf229H3BNL8 230 aa11.91□□□□□ -0.5
LINC00458-202ENST00000427299 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
LINC00458-202ENST00000427299 ZC3H15Q8WU90 426 aaKnown RBP11.91□□□□□ -0.5
LINC00458-202ENST00000427299 HPS1Q92902 700 aa11.91□□□□□ -0.5
LINC00458-202ENST00000427299 NDUFV2P19404 249 aa11.89□□□□□ -0.51
LINC00458-202ENST00000427299 ATP13A2Q9NQ11 1180 aa11.89□□□□□ -0.51
LINC00458-202ENST00000427299 MOXD2PA6NHM9 499 aa11.88□□□□□ -0.51
LINC00458-202ENST00000427299 GIGYF2Q6Y7W6 1299 aaKnown RBP11.88□□□□□ -0.51
LINC00458-202ENST00000427299 CCNYL3P0C7X3 344 aa11.87□□□□□ -0.51
LINC00458-202ENST00000427299 MS4A1P11836 297 aa11.87□□□□□ -0.51
LINC00458-202ENST00000427299 SIAH2O43255 324 aa11.86□□□□□ -0.51
LINC00458-202ENST00000427299 PTPRNQ16849 979 aa11.85□□□□□ -0.51
LINC00458-202ENST00000427299 ALDH1A1P00352 501 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 SNRPBP14678 240 aaKnown RBP11.83□□□□□ -0.52
LINC00458-202ENST00000427299 SH3BP2P78314 561 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 EHBP1Q8NDI1 1231 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 PRR7Q8TB68 274 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 TRIM47Q96LD4 638 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 BEGAINQ9BUH8 593 aa11.83□□□□□ -0.52
LINC00458-202ENST00000427299 MTMR2Q13614 643 aa11.82□□□□□ -0.52
LINC00458-202ENST00000427299 EVA1BQ9NVM1 165 aa11.82□□□□□ -0.52
LINC00458-202ENST00000427299 SPDYE5A6NIY4 337 aa11.81□□□□□ -0.52
LINC00458-202ENST00000427299 GJA5P36382 358 aa11.81□□□□□ -0.52
LINC00458-202ENST00000427299 DESI1Q6ICB0 168 aa11.81□□□□□ -0.52
LINC00458-202ENST00000427299 PARP9Q8IXQ6 854 aa11.81□□□□□ -0.52
LINC00458-202ENST00000427299 UNC93B1Q9H1C4 597 aa11.81□□□□□ -0.52
LINC00458-202ENST00000427299 WFS1O76024 890 aa11.8□□□□□ -0.52
LINC00458-202ENST00000427299 NFX1Q12986 1120 aaKnown RBP11.8□□□□□ -0.52
LINC00458-202ENST00000427299 TBC1D2Q9BYX2 928 aa11.8□□□□□ -0.52
LINC00458-202ENST00000427299 SENP2Q9HC62 589 aa11.8□□□□□ -0.52
LINC00458-202ENST00000427299 KCNH2Q12809 1159 aa11.78□□□□□ -0.52
LINC00458-202ENST00000427299 RSBN1LQ6PCB5 846 aaPredicted RBP11.78□□□□□ -0.52
LINC00458-202ENST00000427299 TRIM66O15016 1216 aa11.77□□□□□ -0.53
LINC00458-202ENST00000427299 DIXDC1Q155Q3 683 aa11.76□□□□□ -0.53
LINC00458-202ENST00000427299 BAP1Q92560 729 aa11.76□□□□□ -0.53
LINC00458-202ENST00000427299 KIFC2Q96AC6 838 aa11.76□□□□□ -0.53
LINC00458-202ENST00000427299 LINC01559Q495D7 138 aa11.75□□□□□ -0.53
LINC00458-202ENST00000427299 PCDHB15Q9Y5E8 787 aa11.75□□□□□ -0.53
LINC00458-202ENST00000427299 SPTLC1O15269 473 aa11.74□□□□□ -0.53
LINC00458-202ENST00000427299 ZNF511Q8NB15 262 aa11.74□□□□□ -0.53
LINC00458-202ENST00000427299 WASF2Q9Y6W5 498 aa11.74□□□□□ -0.53
LINC00458-202ENST00000427299 CFAP99D6REC4 459 aa11.73□□□□□ -0.53
LINC00458-202ENST00000427299 LCE2CQ5TA81 110 aa11.72□□□□□ -0.53
LINC00458-202ENST00000427299 LYPD8Q6UX82 237 aa11.72□□□□□ -0.53
LINC00458-202ENST00000427299 AK7Q96M32 723 aa11.72□□□□□ -0.53
LINC00458-202ENST00000427299 TLL2Q9Y6L7 1015 aa11.72□□□□□ -0.53
LINC00458-202ENST00000427299 TERTO14746 1132 aaKnown RBP11.71□□□□□ -0.53
LINC00458-202ENST00000427299 CAPN5O15484 640 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms