RNA–Protein interactions for RNA: ENST00000421939.5

CDK9-202, Transcript of cyclin dependent kinase 9, humanhuman

TSL 3

Gene CDK9, Length 702 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-202ENST00000421939 COL16A1Q07092 1604 aaPredicted RBP38.26■■■■□ 3.71
CDK9-202ENST00000421939 SIN3AQ96ST3 1273 aa38.24■■■■□ 3.71
CDK9-202ENST00000421939 KIAA1210Q9ULL0 1709 aa38.19■■■■□ 3.7
CDK9-202ENST00000421939 NHSL1Q5SYE7 1610 aa38.19■■■■□ 3.7
CDK9-202ENST00000421939 PRAM1Q96QH2 718 aa38.18■■■■□ 3.7
CDK9-202ENST00000421939 NEUROD1Q13562 356 aa38.17■■■■□ 3.7
CDK9-202ENST00000421939 L3MBTL2Q969R5 705 aa38.15■■■■□ 3.7
CDK9-202ENST00000421939 TRAK1Q9UPV9 953 aa38.14■■■■□ 3.7
CDK9-202ENST00000421939 JCADQ9P266 1359 aa38.14■■■■□ 3.7
CDK9-202ENST00000421939 POGKQ9P215 609 aa38.12■■■■□ 3.69
CDK9-202ENST00000421939 FMN2Q9NZ56 1722 aa38.12■■■■□ 3.69
CDK9-202ENST00000421939 SAFB2Q14151 953 aaKnown RBP eCLIP38.1■■■■□ 3.69
CDK9-202ENST00000421939 ORAI2Q96SN7 254 aa38.09■■■■□ 3.69
CDK9-202ENST00000421939 ARHGEF28Q8N1W1 1705 aaKnown RBP38.07■■■■□ 3.69
CDK9-202ENST00000421939 ADGRB2O60241 1585 aa38.07■■■■□ 3.69
CDK9-202ENST00000421939 SHPRHQ149N8 1683 aa38.04■■■■□ 3.68
CDK9-202ENST00000421939 DDX17Q92841 729 aaKnown RBP38.04■■■■□ 3.68
CDK9-202ENST00000421939 NUTM2FA1L443 756 aa38.02■■■■□ 3.68
CDK9-202ENST00000421939 ESCO1Q5FWF5 840 aa38.01■■■■□ 3.68
CDK9-202ENST00000421939 NBPF1Q3BBV0 1214 aa38■■■■□ 3.67
CDK9-202ENST00000421939 PHF23Q9BUL5 403 aaPredicted RBP37.98■■■■□ 3.67
CDK9-202ENST00000421939 TRPM1Q7Z4N2 1603 aa37.96■■■■□ 3.67
CDK9-202ENST00000421939 SPATA31A6Q5VVP1 1343 aa37.95■■■■□ 3.67
CDK9-202ENST00000421939 MINK1Q8N4C8 1332 aaPredicted RBP37.95■■■■□ 3.67
CDK9-202ENST00000421939 PCGF6Q9BYE7 350 aa37.95■■■■□ 3.67
CDK9-202ENST00000421939 KIF1AQ12756 1690 aa37.95■■■■□ 3.66
CDK9-202ENST00000421939 LRRC59Q96AG4 307 aaKnown RBP37.94■■■■□ 3.66
CDK9-202ENST00000421939 TONSLQ96HA7 1378 aa37.93■■■■□ 3.66
CDK9-202ENST00000421939 SOS2Q07890 1332 aaPredicted RBP37.93■■■■□ 3.66
CDK9-202ENST00000421939 NPHP3Q7Z494 1330 aa37.93■■■■□ 3.66
CDK9-202ENST00000421939 HIRIP3Q9BW71 556 aaPredicted RBP37.93■■■■□ 3.66
CDK9-202ENST00000421939 ANKARQ7Z5J8 1434 aa37.92■■■■□ 3.66
CDK9-202ENST00000421939 RGPD8O14715 1765 aaPredicted RBP37.9■■■■□ 3.66
CDK9-202ENST00000421939 LRP6O75581 1613 aa37.89■■■■□ 3.66
CDK9-202ENST00000421939 USP32Q8NFA0 1604 aa37.89■■■■□ 3.66
CDK9-202ENST00000421939 EIF3AQ14152 1382 aaKnown RBP37.89■■■■□ 3.66
CDK9-202ENST00000421939 PNPLA6Q8IY17 1366 aa37.88■■■■□ 3.65
CDK9-202ENST00000421939 PXDNQ92626 1479 aa37.88■■■■□ 3.65
CDK9-202ENST00000421939 TULP4Q9NRJ4 1543 aa37.87■■■■□ 3.65
CDK9-202ENST00000421939 FOXO3O43524 673 aa37.86■■■■□ 3.65
CDK9-202ENST00000421939 ILDR2Q71H61 639 aa37.86■■■■□ 3.65
CDK9-202ENST00000421939 WASLO00401 505 aaPredicted RBP37.84■■■■□ 3.65
CDK9-202ENST00000421939 ROCK2O75116 1388 aaKnown RBP37.83■■■■□ 3.65
CDK9-202ENST00000421939 PHF8Q9UPP1 1060 aa37.82■■■■□ 3.64
CDK9-202ENST00000421939 NBPF8Q3BBV2 869 aa37.81■■■■□ 3.64
CDK9-202ENST00000421939 XPCQ01831 940 aaPredicted RBP37.79■■■■□ 3.64
CDK9-202ENST00000421939 PRR36Q9H6K5 1346 aa37.78■■■■□ 3.64
CDK9-202ENST00000421939 CENPJQ9HC77 1338 aaPredicted RBP37.78■■■■□ 3.64
CDK9-202ENST00000421939 NUTM2BA6NNL0 878 aaPredicted RBP37.76■■■■□ 3.64
CDK9-202ENST00000421939 NUTM2EB1AL46 878 aaPredicted RBP37.76■■■■□ 3.64
CDK9-202ENST00000421939 NUTM2AQ8IVF1 878 aaPredicted RBP37.76■■■■□ 3.64
CDK9-202ENST00000421939 QRICH2Q9H0J4 1663 aa37.76■■■■□ 3.63
CDK9-202ENST00000421939 MEX3CQ5U5Q3 659 aaKnown RBP37.75■■■■□ 3.63
CDK9-202ENST00000421939 GPRASP1Q5JY77 1395 aa37.75■■■■□ 3.63
CDK9-202ENST00000421939 ATP7BP35670 1465 aa37.74■■■■□ 3.63
CDK9-202ENST00000421939 COL22A1Q8NFW1 1626 aaPredicted RBP37.74■■■■□ 3.63
CDK9-202ENST00000421939 RGS17Q9UGC6 210 aaPredicted RBP37.74■■■■□ 3.63
CDK9-202ENST00000421939 RALGAPBQ86X10 1494 aa37.73■■■■□ 3.63
CDK9-202ENST00000421939 ITSN1Q15811 1721 aa37.71■■■■□ 3.63
CDK9-202ENST00000421939 PMFBP1Q8TBY8 1022 aa37.7■■■■□ 3.63
CDK9-202ENST00000421939 KRT28Q7Z3Y7 464 aa37.69■■■■□ 3.62
CDK9-202ENST00000421939 CDK19Q9BWU1 502 aa37.69■■■■□ 3.62
CDK9-202ENST00000421939 CLSPNQ9HAW4 1339 aa37.68■■■■□ 3.62
CDK9-202ENST00000421939 SPATA31A3Q5VYP0 1347 aa37.65■■■■□ 3.62
CDK9-202ENST00000421939 NUDT16Q96DE0 195 aaKnown RBP37.65■■■■□ 3.62
CDK9-202ENST00000421939 TNS3Q68CZ2 1445 aa37.64■■■■□ 3.62
CDK9-202ENST00000421939 TOPAZ1Q8N9V7 1692 aa37.64■■■■□ 3.62
CDK9-202ENST00000421939 PSME1Q06323 249 aa37.64■■■■□ 3.62
CDK9-202ENST00000421939 SBNO1A3KN83 1393 aa37.62■■■■□ 3.61
CDK9-202ENST00000421939 CARD11Q9BXL7 1154 aa37.61■■■■□ 3.61
CDK9-202ENST00000421939 TRPM3Q9HCF6 1732 aaPredicted RBP37.58■■■■□ 3.61
CDK9-202ENST00000421939 SRPK2P78362 688 aaKnown RBP37.57■■■■□ 3.6
CDK9-202ENST00000421939 POTEAQ6S8J7 498 aa37.57■■■■□ 3.6
CDK9-202ENST00000421939 NGDNQ8NEJ9 315 aaKnown RBP37.57■■■■□ 3.6
CDK9-202ENST00000421939 ADAMTS2O95450 1211 aa37.56■■■■□ 3.6
CDK9-202ENST00000421939 CCDC61Q9Y6R9 512 aa37.56■■■■□ 3.6
CDK9-202ENST00000421939 C8orf37Q96NL8 207 aa37.54■■■■□ 3.6
CDK9-202ENST00000421939 ARHGEF10O15013 1369 aa37.54■■■■□ 3.6
CDK9-202ENST00000421939 ZNF772Q68DY9 489 aaPredicted RBP37.53■■■■□ 3.6
CDK9-202ENST00000421939 CABP2Q9NPB3 220 aa37.52■■■■□ 3.6
CDK9-202ENST00000421939 AFF2P51816 1311 aa37.52■■■■□ 3.6
CDK9-202ENST00000421939 EVC2Q86UK5 1308 aa37.51■■■■□ 3.6
CDK9-202ENST00000421939 CCER1Q8TC90 406 aaPredicted RBP37.49■■■■□ 3.59
CDK9-202ENST00000421939 POLR3AO14802 1390 aaPredicted RBP37.49■■■■□ 3.59
CDK9-202ENST00000421939 SBNO2Q9Y2G9 1366 aa37.49■■■■□ 3.59
CDK9-202ENST00000421939 ALS2Q96Q42 1657 aa37.49■■■■□ 3.59
CDK9-202ENST00000421939 PPIP5K1Q6PFW1 1433 aa37.48■■■■□ 3.59
CDK9-202ENST00000421939 LMOD2Q6P5Q4 547 aa37.48■■■■□ 3.59
CDK9-202ENST00000421939 TIMELESSQ9UNS1 1208 aa37.48■■■■□ 3.59
CDK9-202ENST00000421939 PLEKHG3A1L390 1219 aa37.47■■■■□ 3.59
CDK9-202ENST00000421939 SOCS7O14512 581 aa37.47■■■■□ 3.59
CDK9-202ENST00000421939 MARF1Q9Y4F3 1742 aaKnown RBP37.47■■■■□ 3.59
CDK9-202ENST00000421939 ACEP12821 1306 aa37.45■■■■□ 3.59
CDK9-202ENST00000421939 NGLY1Q96IV0 654 aa37.45■■■■□ 3.59
CDK9-202ENST00000421939 ABCA3Q99758 1704 aa37.44■■■■□ 3.58
CDK9-202ENST00000421939 PAK3O75914 559 aaPredicted RBP37.39■■■■□ 3.58
CDK9-202ENST00000421939 HAP1P54257 671 aaPredicted RBP37.38■■■■□ 3.57
CDK9-202ENST00000421939 CABLES1Q8TDN4 633 aa37.38■■■■□ 3.57
CDK9-202ENST00000421939 PLEKHG5O94827 1062 aa37.36■■■■□ 3.57
CDK9-202ENST00000421939 ATAD2Q6PL18 1390 aa37.35■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms