RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 STK26Q9P289 416 aa26.88■■□□□ 1.89
PTCD3-204ENST00000418628 GPRASP1Q5JY77 1395 aa26.87■■□□□ 1.89
PTCD3-204ENST00000418628 AHDC1Q5TGY3 1603 aaPredicted RBP26.86■■□□□ 1.89
PTCD3-204ENST00000418628 NBPF1Q3BBV0 1214 aa26.85■■□□□ 1.89
PTCD3-204ENST00000418628 CADPS2Q86UW7 1296 aa26.85■■□□□ 1.89
PTCD3-204ENST00000418628 USP32Q8NFA0 1604 aa26.85■■□□□ 1.89
PTCD3-204ENST00000418628 PHLPP1O60346 1717 aa26.85■■□□□ 1.89
PTCD3-204ENST00000418628 NBPF8Q3BBV2 869 aa26.84■■□□□ 1.89
PTCD3-204ENST00000418628 WAPLQ7Z5K2 1190 aa26.84■■□□□ 1.89
PTCD3-204ENST00000418628 C14orf37Q86TY3 774 aa26.84■■□□□ 1.89
PTCD3-204ENST00000418628 COL16A1Q07092 1604 aaPredicted RBP26.82■■□□□ 1.88
PTCD3-204ENST00000418628 ATF3P18847 181 aa26.8■■□□□ 1.88
PTCD3-204ENST00000418628 PIP4K2BP78356 416 aa26.8■■□□□ 1.88
PTCD3-204ENST00000418628 SLAIN2Q9P270 581 aa26.8■■□□□ 1.88
PTCD3-204ENST00000418628 C1orf167Q5SNV9 1468 aa26.8■■□□□ 1.88
PTCD3-204ENST00000418628 ITSN1Q15811 1721 aa26.79■■□□□ 1.88
PTCD3-204ENST00000418628 PRAM1Q96QH2 718 aa26.79■■□□□ 1.88
PTCD3-204ENST00000418628 TRAK1Q9UPV9 953 aa26.79■■□□□ 1.88
PTCD3-204ENST00000418628 KIF1AQ12756 1690 aa26.79■■□□□ 1.88
PTCD3-204ENST00000418628 TIMELESSQ9UNS1 1208 aa26.78■■□□□ 1.88
PTCD3-204ENST00000418628 TOPAZ1Q8N9V7 1692 aa26.78■■□□□ 1.88
PTCD3-204ENST00000418628 ROCK2O75116 1388 aaKnown RBP26.76■■□□□ 1.87
PTCD3-204ENST00000418628 CCER1Q8TC90 406 aaPredicted RBP26.76■■□□□ 1.87
PTCD3-204ENST00000418628 SCAF1Q9H7N4 1312 aaKnown RBP26.73■■□□□ 1.87
PTCD3-204ENST00000418628 TULP4Q9NRJ4 1543 aa26.73■■□□□ 1.87
PTCD3-204ENST00000418628 SHPRHQ149N8 1683 aa26.7■■□□□ 1.87
PTCD3-204ENST00000418628 HSPA1LP34931 641 aa26.7■■□□□ 1.86
PTCD3-204ENST00000418628 BRINP3Q76B58 766 aa26.7■■□□□ 1.86
PTCD3-204ENST00000418628 ANKARQ7Z5J8 1434 aa26.7■■□□□ 1.86
PTCD3-204ENST00000418628 POGKQ9P215 609 aa26.69■■□□□ 1.86
PTCD3-204ENST00000418628 SAFB2Q14151 953 aaKnown RBP eCLIP26.67■■□□□ 1.86
PTCD3-204ENST00000418628 ATP7BP35670 1465 aa26.67■■□□□ 1.86
PTCD3-204ENST00000418628 CENPJQ9HC77 1338 aaPredicted RBP26.65■■□□□ 1.86
PTCD3-204ENST00000418628 EIF3AQ14152 1382 aaKnown RBP26.64■■□□□ 1.86
PTCD3-204ENST00000418628 MINK1Q8N4C8 1332 aaPredicted RBP26.64■■□□□ 1.85
PTCD3-204ENST00000418628 SBNO2Q9Y2G9 1366 aa26.63■■□□□ 1.85
PTCD3-204ENST00000418628 PXDNQ92626 1479 aa26.61■■□□□ 1.85
PTCD3-204ENST00000418628 TRPM3Q9HCF6 1732 aaPredicted RBP26.6■■□□□ 1.85
PTCD3-204ENST00000418628 WASLO00401 505 aaPredicted RBP26.59■■□□□ 1.85
PTCD3-204ENST00000418628 ORAI2Q96SN7 254 aa26.59■■□□□ 1.85
PTCD3-204ENST00000418628 HIRIP3Q9BW71 556 aaPredicted RBP26.59■■□□□ 1.85
PTCD3-204ENST00000418628 CARD11Q9BXL7 1154 aa26.58■■□□□ 1.85
PTCD3-204ENST00000418628 PRR36Q9H6K5 1346 aa26.58■■□□□ 1.85
PTCD3-204ENST00000418628 COL22A1Q8NFW1 1626 aaPredicted RBP26.57■■□□□ 1.84
PTCD3-204ENST00000418628 MED1Q15648 1581 aaPredicted RBP26.54■■□□□ 1.84
PTCD3-204ENST00000418628 AKAP12Q02952 1782 aa26.54■■□□□ 1.84
PTCD3-204ENST00000418628 SOS2Q07890 1332 aaPredicted RBP26.53■■□□□ 1.84
PTCD3-204ENST00000418628 ALS2Q96Q42 1657 aa26.53■■□□□ 1.84
PTCD3-204ENST00000418628 NUTM2FA1L443 756 aa26.52■■□□□ 1.84
PTCD3-204ENST00000418628 ABCA3Q99758 1704 aa26.51■■□□□ 1.83
PTCD3-204ENST00000418628 ESCO1Q5FWF5 840 aa26.51■■□□□ 1.83
PTCD3-204ENST00000418628 JCADQ9P266 1359 aa26.49■■□□□ 1.83
PTCD3-204ENST00000418628 MARF1Q9Y4F3 1742 aaKnown RBP26.49■■□□□ 1.83
PTCD3-204ENST00000418628 DDX17Q92841 729 aaKnown RBP26.49■■□□□ 1.83
PTCD3-204ENST00000418628 CRYBG1Q9Y4K1 1723 aa26.48■■□□□ 1.83
PTCD3-204ENST00000418628 USP47Q96K76 1375 aa26.48■■□□□ 1.83
PTCD3-204ENST00000418628 NPHP3Q7Z494 1330 aa26.48■■□□□ 1.83
PTCD3-204ENST00000418628 CDK19Q9BWU1 502 aa26.48■■□□□ 1.83
PTCD3-204ENST00000418628 PHF8Q9UPP1 1060 aa26.46■■□□□ 1.83
PTCD3-204ENST00000418628 MON2Q7Z3U7 1717 aa26.45■■□□□ 1.83
PTCD3-204ENST00000418628 NUDT16Q96DE0 195 aaKnown RBP26.44■■□□□ 1.82
PTCD3-204ENST00000418628 NRKQ7Z2Y5 1582 aa26.44■■□□□ 1.82
PTCD3-204ENST00000418628 POLR3AO14802 1390 aaPredicted RBP26.44■■□□□ 1.82
PTCD3-204ENST00000418628 PNPLA6Q8IY17 1366 aa26.44■■□□□ 1.82
PTCD3-204ENST00000418628 TESK2Q96S53 571 aa26.43■■□□□ 1.82
PTCD3-204ENST00000418628 EVC2Q86UK5 1308 aa26.42■■□□□ 1.82
PTCD3-204ENST00000418628 LRP6O75581 1613 aa26.42■■□□□ 1.82
PTCD3-204ENST00000418628 FOXO3O43524 673 aa26.41■■□□□ 1.82
PTCD3-204ENST00000418628 MYOM1P52179 1685 aa26.41■■□□□ 1.82
PTCD3-204ENST00000418628 PPIP5K1Q6PFW1 1433 aa26.4■■□□□ 1.82
PTCD3-204ENST00000418628 LRRC59Q96AG4 307 aaKnown RBP26.39■■□□□ 1.82
PTCD3-204ENST00000418628 TNS3Q68CZ2 1445 aa26.39■■□□□ 1.81
PTCD3-204ENST00000418628 SBNO1A3KN83 1393 aa26.38■■□□□ 1.81
PTCD3-204ENST00000418628 ST20-MTHFSA0A0A6YYL1 179 aa26.38■■□□□ 1.81
PTCD3-204ENST00000418628 CCDC61Q9Y6R9 512 aa26.38■■□□□ 1.81
PTCD3-204ENST00000418628 PLEKHG3A1L390 1219 aa26.37■■□□□ 1.81
PTCD3-204ENST00000418628 CABP2Q9NPB3 220 aa26.37■■□□□ 1.81
PTCD3-204ENST00000418628 ATAD2Q6PL18 1390 aa26.36■■□□□ 1.81
PTCD3-204ENST00000418628 SRPK2P78362 688 aaKnown RBP26.36■■□□□ 1.81
PTCD3-204ENST00000418628 PMFBP1Q8TBY8 1022 aa26.36■■□□□ 1.81
PTCD3-204ENST00000418628 SPATA31A6Q5VVP1 1343 aa26.36■■□□□ 1.81
PTCD3-204ENST00000418628 PHRF1Q9P1Y6 1649 aaKnown RBP26.34■■□□□ 1.81
PTCD3-204ENST00000418628 SPATA31A3Q5VYP0 1347 aa26.34■■□□□ 1.81
PTCD3-204ENST00000418628 XPCQ01831 940 aaPredicted RBP26.33■■□□□ 1.81
PTCD3-204ENST00000418628 USP54Q70EL1 1684 aa26.33■■□□□ 1.81
PTCD3-204ENST00000418628 PUS7Q96PZ0 661 aaKnown RBP26.32■■□□□ 1.8
PTCD3-204ENST00000418628 DISP3Q9P2K9 1392 aa26.32■■□□□ 1.8
PTCD3-204ENST00000418628 PIK3C2AO00443 1686 aa26.31■■□□□ 1.8
PTCD3-204ENST00000418628 CD163L1Q9NR16 1453 aa26.31■■□□□ 1.8
PTCD3-204ENST00000418628 KRT28Q7Z3Y7 464 aa26.31■■□□□ 1.8
PTCD3-204ENST00000418628 ACEP12821 1306 aa26.3■■□□□ 1.8
PTCD3-204ENST00000418628 CPSF1Q10570 1443 aaKnown RBP26.3■■□□□ 1.8
PTCD3-204ENST00000418628 SSH2Q76I76 1423 aa26.29■■□□□ 1.8
PTCD3-204ENST00000418628 SLC24A1O60721 1099 aa26.28■■□□□ 1.8
PTCD3-204ENST00000418628 USP6P35125 1406 aa26.28■■□□□ 1.8
PTCD3-204ENST00000418628 BRD4O60885 1362 aaPredicted RBP26.27■■□□□ 1.8
PTCD3-204ENST00000418628 ARHGEF10O15013 1369 aa26.26■■□□□ 1.79
PTCD3-204ENST00000418628 PSME1Q06323 249 aa26.26■■□□□ 1.79
PTCD3-204ENST00000418628 NGDNQ8NEJ9 315 aaKnown RBP26.26■■□□□ 1.79
PTCD3-204ENST00000418628 NINLQ9Y2I6 1382 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms