RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 PCDHGC3Q9UN70 934 aa8.49□□□□□ -1.05
HMGB3P23-201ENST00000414981 GUCA2AQ02747 115 aa8.48□□□□□ -1.05
HMGB3P23-201ENST00000414981 TUSC1Q2TAM9 212 aa8.47□□□□□ -1.05
HMGB3P23-201ENST00000414981 RSBN1LQ6PCB5 846 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P23-201ENST00000414981 RIC3Q7Z5B4 369 aa8.47□□□□□ -1.05
HMGB3P23-201ENST00000414981 DDRGK1Q96HY6 314 aa8.47□□□□□ -1.05
HMGB3P23-201ENST00000414981 V9GY48 417 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P23-201ENST00000414981 SPDYE5A6NIY4 337 aa8.46□□□□□ -1.06
HMGB3P23-201ENST00000414981 PPEF1O14829 653 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P23-201ENST00000414981 MMP16P51512 607 aa8.46□□□□□ -1.06
HMGB3P23-201ENST00000414981 RETREG3Q86VR2 466 aa8.46□□□□□ -1.06
HMGB3P23-201ENST00000414981 MYSM1Q5VVJ2 828 aa8.45□□□□□ -1.06
HMGB3P23-201ENST00000414981 SYMPKQ92797 1274 aaKnown RBP8.45□□□□□ -1.06
HMGB3P23-201ENST00000414981 PRKD2Q9BZL6 878 aa8.45□□□□□ -1.06
HMGB3P23-201ENST00000414981 FAM117AQ9C073 453 aa8.45□□□□□ -1.06
HMGB3P23-201ENST00000414981 C6orf229H3BNL8 230 aa8.44□□□□□ -1.06
HMGB3P23-201ENST00000414981 NEUROD2Q15784 382 aa8.44□□□□□ -1.06
HMGB3P23-201ENST00000414981 PRPF38BQ5VTL8 546 aaKnown RBP8.44□□□□□ -1.06
HMGB3P23-201ENST00000414981 DXOO77932 396 aaKnown RBP8.43□□□□□ -1.06
HMGB3P23-201ENST00000414981 MTMR2Q13614 643 aa8.43□□□□□ -1.06
HMGB3P23-201ENST00000414981 PCDHB15Q9Y5E8 787 aa8.43□□□□□ -1.06
HMGB3P23-201ENST00000414981 SLC19A1P41440 591 aa8.42□□□□□ -1.06
HMGB3P23-201ENST00000414981 BRPF1P55201 1214 aaPredicted RBP8.42□□□□□ -1.06
HMGB3P23-201ENST00000414981 SKIV2LQ15477 1246 aaKnown RBP8.42□□□□□ -1.06
HMGB3P23-201ENST00000414981 PLEKHG3A1L390 1219 aa8.41□□□□□ -1.06
HMGB3P23-201ENST00000414981 PRKCSHP14314 528 aaPredicted RBP8.41□□□□□ -1.06
HMGB3P23-201ENST00000414981 DESI1Q6ICB0 168 aa8.41□□□□□ -1.06
HMGB3P23-201ENST00000414981 PRDM9Q9NQV7 894 aa8.41□□□□□ -1.06
HMGB3P23-201ENST00000414981 JUNDP17535 347 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 HRCP23327 699 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 RPIAP49247 311 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 LIAT1Q6ZQX7 453 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 EMID1Q96A84 441 aaPredicted RBP8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 ZBTB3Q9H5J0 574 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 LIMD1Q9UGP4 676 aa8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 FCF1Q9Y324 198 aaKnown RBP8.4□□□□□ -1.06
HMGB3P23-201ENST00000414981 LILRB3O75022 631 aa8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 CLK2P49760 499 aaKnown RBP8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 SH3D19Q5HYK7 790 aa8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 PRR7Q8TB68 274 aa8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 GOPCQ9HD26 462 aa8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 POLR3EQ9NVU0 708 aa8.39□□□□□ -1.07
HMGB3P23-201ENST00000414981 PLA2G2CQ5R387 149 aa8.38□□□□□ -1.07
HMGB3P23-201ENST00000414981 SPRYD7Q5W111 196 aa8.38□□□□□ -1.07
HMGB3P23-201ENST00000414981 CD2BP2O95400 341 aaKnown RBP8.37□□□□□ -1.07
HMGB3P23-201ENST00000414981 ZNF598Q86UK7 904 aaKnown RBP8.37□□□□□ -1.07
HMGB3P23-201ENST00000414981 NUTM2BA6NNL0 878 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 NUTM2EB1AL46 878 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 CSPP1Q1MSJ5 1256 aa8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 NUTM2DQ5VT03 806 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 NUTM2AQ8IVF1 878 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 IL27Q8NEV9 243 aa8.36□□□□□ -1.07
HMGB3P23-201ENST00000414981 ZBTB24O43167 697 aaPredicted RBP8.35□□□□□ -1.07
HMGB3P23-201ENST00000414981 QPCTQ16769 361 aa8.35□□□□□ -1.07
HMGB3P23-201ENST00000414981 CABLES1Q8TDN4 633 aa8.35□□□□□ -1.07
HMGB3P23-201ENST00000414981 PTPRNQ16849 979 aa8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 LYPD8Q6UX82 237 aa8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 PROCA1Q8NCQ7 364 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 NUDT12Q9BQG2 462 aa8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 IRX2Q9BZI1 471 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 EVA1BQ9NVM1 165 aa8.34□□□□□ -1.07
HMGB3P23-201ENST00000414981 CFAP99D6REC4 459 aa8.33□□□□□ -1.08
HMGB3P23-201ENST00000414981 LAPTM4AQ15012 233 aa8.33□□□□□ -1.08
HMGB3P23-201ENST00000414981 RTL5Q5HYW3 569 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P23-201ENST00000414981 PPP2R2DQ66LE6 453 aa8.33□□□□□ -1.08
HMGB3P23-201ENST00000414981 CCDC24Q8N4L8 307 aa8.33□□□□□ -1.08
HMGB3P23-201ENST00000414981 CCNYL3P0C7X3 344 aa8.31□□□□□ -1.08
HMGB3P23-201ENST00000414981 ZNF697Q5TEC3 545 aa8.31□□□□□ -1.08
HMGB3P23-201ENST00000414981 KCNH2Q12809 1159 aa8.3□□□□□ -1.08
HMGB3P23-201ENST00000414981 PCMTD1Q96MG8 357 aaPredicted RBP8.3□□□□□ -1.08
HMGB3P23-201ENST00000414981 GFRA3O60609 400 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PRR20EP86478 221 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PRR20CP86479 221 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PRR20DP86480 221 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PRR20BP86481 221 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PRR20AP86496 221 aa8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 PTCRAQ6ISU1 281 aaPredicted RBP8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 ATP1B4Q9UN42 357 aaPredicted RBP8.29□□□□□ -1.08
HMGB3P23-201ENST00000414981 GDF9O60383 454 aa8.28□□□□□ -1.08
HMGB3P23-201ENST00000414981 TRIM32Q13049 653 aa8.28□□□□□ -1.08
HMGB3P23-201ENST00000414981 HELBQ8NG08 1087 aaPredicted RBP8.28□□□□□ -1.08
HMGB3P23-201ENST00000414981 PDZRN3Q9UPQ7 1066 aa8.28□□□□□ -1.08
HMGB3P23-201ENST00000414981 NRG2O14511 850 aaPredicted RBP8.27□□□□□ -1.09
HMGB3P23-201ENST00000414981 TRIM67Q6ZTA4 783 aa8.27□□□□□ -1.09
HMGB3P23-201ENST00000414981 WNT7BP56706 349 aa8.26□□□□□ -1.09
HMGB3P23-201ENST00000414981 FBXO31Q5XUX0 539 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P23-201ENST00000414981 PKD2L1Q9P0L9 805 aa8.26□□□□□ -1.09
HMGB3P23-201ENST00000414981 PER1O15534 1290 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P23-201ENST00000414981 F12P00748 615 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P23-201ENST00000414981 TSC1Q92574 1164 aa8.25□□□□□ -1.09
HMGB3P23-201ENST00000414981 UNC93B1Q9H1C4 597 aa8.25□□□□□ -1.09
HMGB3P23-201ENST00000414981 WNT7AO00755 349 aa8.24□□□□□ -1.09
HMGB3P23-201ENST00000414981 CTHP32929 405 aa8.24□□□□□ -1.09
HMGB3P23-201ENST00000414981 CTDSPL2Q05D32 466 aa8.24□□□□□ -1.09
HMGB3P23-201ENST00000414981 FOXC1Q12948 553 aa8.23□□□□□ -1.09
HMGB3P23-201ENST00000414981 TMEM259Q4ZIN3 620 aa8.23□□□□□ -1.09
HMGB3P23-201ENST00000414981 RFC5P40937 340 aa8.22□□□□□ -1.09
HMGB3P23-201ENST00000414981 SKOR1P84550 965 aa8.22□□□□□ -1.09
HMGB3P23-201ENST00000414981 RC3H1Q5TC82 1133 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms