RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 CDC42BPGQ6DT37 1551 aa16.22■□□□□ 0.19
RFFL-204ENST00000414419 ILDR2Q71H61 639 aa16.22■□□□□ 0.19
RFFL-204ENST00000414419 NHSL1Q5SYE7 1610 aa16.22■□□□□ 0.19
RFFL-204ENST00000414419 PLEKHH1Q9ULM0 1364 aa16.22■□□□□ 0.19
RFFL-204ENST00000414419 SAFB2Q14151 953 aaKnown RBP eCLIP16.2■□□□□ 0.18
RFFL-204ENST00000414419 ESCO1Q5FWF5 840 aa16.2■□□□□ 0.18
RFFL-204ENST00000414419 LRRC59Q96AG4 307 aaKnown RBP16.2■□□□□ 0.18
RFFL-204ENST00000414419 PRAM1Q96QH2 718 aa16.2■□□□□ 0.18
RFFL-204ENST00000414419 ORAI2Q96SN7 254 aa16.2■□□□□ 0.18
RFFL-204ENST00000414419 TRAK1Q9UPV9 953 aa16.2■□□□□ 0.18
RFFL-204ENST00000414419 SHPRHQ149N8 1683 aa16.19■□□□□ 0.18
RFFL-204ENST00000414419 NUTM2FA1L443 756 aa16.19■□□□□ 0.18
RFFL-204ENST00000414419 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
RFFL-204ENST00000414419 ADGRB1O14514 1584 aa16.18■□□□□ 0.18
RFFL-204ENST00000414419 NEUROD1Q13562 356 aa16.18■□□□□ 0.18
RFFL-204ENST00000414419 DDX17Q92841 729 aaKnown RBP16.18■□□□□ 0.18
RFFL-204ENST00000414419 DLC1Q96QB1 1528 aa16.18■□□□□ 0.18
RFFL-204ENST00000414419 MEX3CQ5U5Q3 659 aaKnown RBP16.17■□□□□ 0.18
RFFL-204ENST00000414419 SIN3AQ96ST3 1273 aa16.17■□□□□ 0.18
RFFL-204ENST00000414419 FMN2Q9NZ56 1722 aa16.16■□□□□ 0.18
RFFL-204ENST00000414419 KIAA1210Q9ULL0 1709 aa16.16■□□□□ 0.18
RFFL-204ENST00000414419 RGPD8O14715 1765 aaPredicted RBP16.15■□□□□ 0.18
RFFL-204ENST00000414419 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
RFFL-204ENST00000414419 NUTM2BA6NNL0 878 aaPredicted RBP16.14■□□□□ 0.17
RFFL-204ENST00000414419 NUTM2EB1AL46 878 aaPredicted RBP16.14■□□□□ 0.17
RFFL-204ENST00000414419 NUTM2AQ8IVF1 878 aaPredicted RBP16.14■□□□□ 0.17
RFFL-204ENST00000414419 L3MBTL2Q969R5 705 aa16.13■□□□□ 0.17
RFFL-204ENST00000414419 FOXO3O43524 673 aa16.12■□□□□ 0.17
RFFL-204ENST00000414419 HIRIP3Q9BW71 556 aaPredicted RBP16.12■□□□□ 0.17
RFFL-204ENST00000414419 SOS2Q07890 1332 aaPredicted RBP16.12■□□□□ 0.17
RFFL-204ENST00000414419 MINK1Q8N4C8 1332 aaPredicted RBP16.12■□□□□ 0.17
RFFL-204ENST00000414419 KIF1AQ12756 1690 aa16.11■□□□□ 0.17
RFFL-204ENST00000414419 ARHGEF28Q8N1W1 1705 aaKnown RBP16.11■□□□□ 0.17
RFFL-204ENST00000414419 SOCS7O14512 581 aa16.1■□□□□ 0.17
RFFL-204ENST00000414419 RGS17Q9UGC6 210 aaPredicted RBP16.1■□□□□ 0.17
RFFL-204ENST00000414419 LRP6O75581 1613 aa16.09■□□□□ 0.17
RFFL-204ENST00000414419 XPCQ01831 940 aaPredicted RBP16.09■□□□□ 0.17
RFFL-204ENST00000414419 NBPF1Q3BBV0 1214 aa16.09■□□□□ 0.17
RFFL-204ENST00000414419 PHF8Q9UPP1 1060 aa16.09■□□□□ 0.17
RFFL-204ENST00000414419 EIF3AQ14152 1382 aaKnown RBP16.09■□□□□ 0.17
RFFL-204ENST00000414419 PNPLA6Q8IY17 1366 aa16.09■□□□□ 0.17
RFFL-204ENST00000414419 ADGRB2O60241 1585 aa16.09■□□□□ 0.17
RFFL-204ENST00000414419 WASLO00401 505 aaPredicted RBP16.07■□□□□ 0.16
RFFL-204ENST00000414419 ANKARQ7Z5J8 1434 aa16.06■□□□□ 0.16
RFFL-204ENST00000414419 PSME1Q06323 249 aa16.06■□□□□ 0.16
RFFL-204ENST00000414419 ZNF772Q68DY9 489 aaPredicted RBP16.06■□□□□ 0.16
RFFL-204ENST00000414419 KRT28Q7Z3Y7 464 aa16.06■□□□□ 0.16
RFFL-204ENST00000414419 PXDNQ92626 1479 aa16.05■□□□□ 0.16
RFFL-204ENST00000414419 POTEAQ6S8J7 498 aa16.05■□□□□ 0.16
RFFL-204ENST00000414419 ADAMTS2O95450 1211 aa16.04■□□□□ 0.16
RFFL-204ENST00000414419 PMFBP1Q8TBY8 1022 aa16.04■□□□□ 0.16
RFFL-204ENST00000414419 TONSLQ96HA7 1378 aa16.03■□□□□ 0.16
RFFL-204ENST00000414419 C8orf37Q96NL8 207 aa16.03■□□□□ 0.16
RFFL-204ENST00000414419 USP32Q8NFA0 1604 aa16.03■□□□□ 0.16
RFFL-204ENST00000414419 TULP4Q9NRJ4 1543 aa16.03■□□□□ 0.16
RFFL-204ENST00000414419 TRPM1Q7Z4N2 1603 aa16.02■□□□□ 0.16
RFFL-204ENST00000414419 ITSN1Q15811 1721 aa16.02■□□□□ 0.15
RFFL-204ENST00000414419 ROCK2O75116 1388 aaKnown RBP16.01■□□□□ 0.15
RFFL-204ENST00000414419 COL22A1Q8NFW1 1626 aaPredicted RBP16.01■□□□□ 0.15
RFFL-204ENST00000414419 AFF2P51816 1311 aa16.01■□□□□ 0.15
RFFL-204ENST00000414419 CENPJQ9HC77 1338 aaPredicted RBP16.01■□□□□ 0.15
RFFL-204ENST00000414419 LMOD2Q6P5Q4 547 aa16.01■□□□□ 0.15
RFFL-204ENST00000414419 NGLY1Q96IV0 654 aa16.01■□□□□ 0.15
RFFL-204ENST00000414419 CDK19Q9BWU1 502 aa16.01■□□□□ 0.15
RFFL-204ENST00000414419 SPATA31A3Q5VYP0 1347 aa16■□□□□ 0.15
RFFL-204ENST00000414419 NGDNQ8NEJ9 315 aaKnown RBP16■□□□□ 0.15
RFFL-204ENST00000414419 NUDT16Q96DE0 195 aaKnown RBP16■□□□□ 0.15
RFFL-204ENST00000414419 GPRASP1Q5JY77 1395 aa16■□□□□ 0.15
RFFL-204ENST00000414419 PRR36Q9H6K5 1346 aa15.99■□□□□ 0.15
RFFL-204ENST00000414419 HAP1P54257 671 aaPredicted RBP15.99■□□□□ 0.15
RFFL-204ENST00000414419 QRICH2Q9H0J4 1663 aa15.99■□□□□ 0.15
RFFL-204ENST00000414419 SBNO1A3KN83 1393 aa15.98■□□□□ 0.15
RFFL-204ENST00000414419 MARF1Q9Y4F3 1742 aaKnown RBP15.97■□□□□ 0.15
RFFL-204ENST00000414419 TNS3Q68CZ2 1445 aa15.97■□□□□ 0.15
RFFL-204ENST00000414419 SRPK2P78362 688 aaKnown RBP15.97■□□□□ 0.15
RFFL-204ENST00000414419 PCGF6Q9BYE7 350 aa15.97■□□□□ 0.15
RFFL-204ENST00000414419 PLEKHG5O94827 1062 aa15.96■□□□□ 0.15
RFFL-204ENST00000414419 RXRBP28702 533 aa15.96■□□□□ 0.15
RFFL-204ENST00000414419 NBPF8Q3BBV2 869 aa15.96■□□□□ 0.15
RFFL-204ENST00000414419 CCDC61Q9Y6R9 512 aa15.96■□□□□ 0.15
RFFL-204ENST00000414419 ARHGEF10O15013 1369 aa15.96■□□□□ 0.15
RFFL-204ENST00000414419 PAK3O75914 559 aaPredicted RBP15.95■□□□□ 0.14
RFFL-204ENST00000414419 QTRT2Q9H974 415 aaKnown RBP15.95■□□□□ 0.14
RFFL-204ENST00000414419 ATP7BP35670 1465 aa15.95■□□□□ 0.14
RFFL-204ENST00000414419 CARD11Q9BXL7 1154 aa15.94■□□□□ 0.14
RFFL-204ENST00000414419 USP21Q9UK80 565 aa15.94■□□□□ 0.14
RFFL-204ENST00000414419 EVC2Q86UK5 1308 aa15.93■□□□□ 0.14
RFFL-204ENST00000414419 TRPM3Q9HCF6 1732 aaPredicted RBP15.92■□□□□ 0.14
RFFL-204ENST00000414419 CABP2Q9NPB3 220 aa15.92■□□□□ 0.14
RFFL-204ENST00000414419 FNBP4Q8N3X1 1017 aaPredicted RBP15.91■□□□□ 0.14
RFFL-204ENST00000414419 CABLES1Q8TDN4 633 aa15.91■□□□□ 0.14
RFFL-204ENST00000414419 TOPAZ1Q8N9V7 1692 aa15.91■□□□□ 0.14
RFFL-204ENST00000414419 ACEP12821 1306 aa15.91■□□□□ 0.14
RFFL-204ENST00000414419 PLEKHG3A1L390 1219 aa15.9■□□□□ 0.14
RFFL-204ENST00000414419 RBM6P78332 1123 aaKnown RBP15.9■□□□□ 0.14
RFFL-204ENST00000414419 TRPC5Q9UL62 973 aaPredicted RBP15.9■□□□□ 0.14
RFFL-204ENST00000414419 ALS2Q96Q42 1657 aa15.89■□□□□ 0.13
RFFL-204ENST00000414419 PPIP5K1Q6PFW1 1433 aa15.89■□□□□ 0.13
RFFL-204ENST00000414419 RALGAPBQ86X10 1494 aa15.89■□□□□ 0.13
RFFL-204ENST00000414419 ABCA3Q99758 1704 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms