RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 ZBTB3Q9H5J0 574 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 RAD21O60216 631 aa8.1□□□□□ -1.11
BRCA1-204ENST00000412061 IRX2Q9BZI1 471 aaPredicted RBP8.1□□□□□ -1.11
BRCA1-204ENST00000412061 KMT5BQ4FZB7 885 aa8.09□□□□□ -1.11
BRCA1-204ENST00000412061 LRCH3Q96II8 777 aa8.09□□□□□ -1.11
BRCA1-204ENST00000412061 HRCP23327 699 aa8.08□□□□□ -1.12
BRCA1-204ENST00000412061 FUT2Q10981 343 aa8.08□□□□□ -1.12
BRCA1-204ENST00000412061 RTL5Q5HYW3 569 aaPredicted RBP8.08□□□□□ -1.12
BRCA1-204ENST00000412061 CABLES1Q8TDN4 633 aa8.08□□□□□ -1.12
BRCA1-204ENST00000412061 SNRKQ9NRH2 765 aa8.08□□□□□ -1.12
BRCA1-204ENST00000412061 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.08□□□□□ -1.12
BRCA1-204ENST00000412061 AP1G2O75843 785 aa8.07□□□□□ -1.12
BRCA1-204ENST00000412061 ATP6V1AP38606 617 aa8.07□□□□□ -1.12
BRCA1-204ENST00000412061 GUCA2AQ02747 115 aa8.07□□□□□ -1.12
BRCA1-204ENST00000412061 PCDHGC3Q9UN70 934 aa8.07□□□□□ -1.12
BRCA1-204ENST00000412061 APBB1O00213 710 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 SOCS7O14512 581 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 TRAK2O60296 914 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 BCAMP50895 628 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 MTMR2Q13614 643 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 PROSER2Q86WR7 435 aaPredicted RBP8.06□□□□□ -1.12
BRCA1-204ENST00000412061 ANKK1Q8NFD2 765 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 HLA-CQ95604 372 aa8.06□□□□□ -1.12
BRCA1-204ENST00000412061 POM121Q96HA1 1249 aa8.05□□□□□ -1.12
BRCA1-204ENST00000412061 PRR14Q9BWN1 585 aa8.05□□□□□ -1.12
BRCA1-204ENST00000412061 COG6Q9Y2V7 657 aa8.05□□□□□ -1.12
BRCA1-204ENST00000412061 USP17L8P0C7I0 530 aa8.04□□□□□ -1.12
BRCA1-204ENST00000412061 MTMR14Q8NCE2 650 aa8.04□□□□□ -1.12
BRCA1-204ENST00000412061 PRM3Q9NNZ6 103 aa8.04□□□□□ -1.12
BRCA1-204ENST00000412061 C6orf229H3BNL8 230 aa8.03□□□□□ -1.12
BRCA1-204ENST00000412061 ACTN4O43707 911 aaKnown RBP8.03□□□□□ -1.12
BRCA1-204ENST00000412061 ITGBL1O95965 494 aaPredicted RBP8.03□□□□□ -1.12
BRCA1-204ENST00000412061 ARID3CA6NKF2 412 aa8.03□□□□□ -1.12
BRCA1-204ENST00000412061 HELBQ8NG08 1087 aaPredicted RBP8.03□□□□□ -1.12
BRCA1-204ENST00000412061 SOWAHBA6NEL2 793 aa8.02□□□□□ -1.13
BRCA1-204ENST00000412061 PPP4CP60510 307 aa8.02□□□□□ -1.13
BRCA1-204ENST00000412061 MORN1Q5T089 497 aa8.02□□□□□ -1.13
BRCA1-204ENST00000412061 FNBP4Q8N3X1 1017 aaPredicted RBP8.02□□□□□ -1.13
BRCA1-204ENST00000412061 C1orf115Q9H7X2 142 aa8.02□□□□□ -1.13
BRCA1-204ENST00000412061 Q3C1V9 767 aa8.01□□□□□ -1.13
BRCA1-204ENST00000412061 WWC1Q8IX03 1113 aa8.01□□□□□ -1.13
BRCA1-204ENST00000412061 TSC1Q92574 1164 aa8.01□□□□□ -1.13
BRCA1-204ENST00000412061 HPS5Q9UPZ3 1129 aa8.01□□□□□ -1.13
BRCA1-204ENST00000412061 PUS10Q3MIT2 529 aaKnown RBP8□□□□□ -1.13
BRCA1-204ENST00000412061 GDPD2Q9HCC8 539 aa8□□□□□ -1.13
BRCA1-204ENST00000412061 WBP1LQ9NX94 342 aa8□□□□□ -1.13
BRCA1-204ENST00000412061 TSR3Q9UJK0 312 aaKnown RBP8□□□□□ -1.13
BRCA1-204ENST00000412061 CFAP99D6REC4 459 aa7.99□□□□□ -1.13
BRCA1-204ENST00000412061 CTDSPL2Q05D32 466 aa7.99□□□□□ -1.13
BRCA1-204ENST00000412061 TRIM26Q12899 539 aaPredicted RBP7.99□□□□□ -1.13
BRCA1-204ENST00000412061 RETREG3Q86VR2 466 aa7.99□□□□□ -1.13
BRCA1-204ENST00000412061 SLC27A5Q9Y2P5 690 aa7.99□□□□□ -1.13
BRCA1-204ENST00000412061 PRR7Q8TB68 274 aa7.98□□□□□ -1.13
BRCA1-204ENST00000412061 SYMPKQ92797 1274 aaKnown RBP7.98□□□□□ -1.13
BRCA1-204ENST00000412061 ARID3AQ99856 593 aa7.98□□□□□ -1.13
BRCA1-204ENST00000412061 ZNF777Q9ULD5 760 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-204ENST00000412061 ZNF330Q9Y3S2 320 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-204ENST00000412061 NDUFB9Q9Y6M9 179 aa7.98□□□□□ -1.13
BRCA1-204ENST00000412061 ABL2P42684 1182 aa7.97□□□□□ -1.13
BRCA1-204ENST00000412061 TBC1D2BQ9UPU7 963 aa7.97□□□□□ -1.13
BRCA1-204ENST00000412061 APLP1P51693 650 aa7.96□□□□□ -1.14
BRCA1-204ENST00000412061 GJD4Q96KN9 370 aaPredicted RBP7.96□□□□□ -1.14
BRCA1-204ENST00000412061 PCDHB3Q9Y5E6 796 aa7.96□□□□□ -1.14
BRCA1-204ENST00000412061 DESI1Q6ICB0 168 aa7.95□□□□□ -1.14
BRCA1-204ENST00000412061 LRRN4Q8WUT4 740 aa7.95□□□□□ -1.14
BRCA1-204ENST00000412061 HMX1Q9NP08 348 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-204ENST00000412061 SALL2Q9Y467 1007 aaPredicted RBP7.95□□□□□ -1.14
BRCA1-204ENST00000412061 NR1I2O75469 434 aa7.94□□□□□ -1.14
BRCA1-204ENST00000412061 KCNC4Q03721 635 aa7.94□□□□□ -1.14
BRCA1-204ENST00000412061 NYAP1Q6ZVC0 841 aa7.94□□□□□ -1.14
BRCA1-204ENST00000412061 CCDC82Q8N4S0 544 aa7.94□□□□□ -1.14
BRCA1-204ENST00000412061 BLOC1S3Q6QNY0 202 aa7.93□□□□□ -1.14
BRCA1-204ENST00000412061 RNF19BQ6ZMZ0 732 aa7.93□□□□□ -1.14
BRCA1-204ENST00000412061 Q6ZNB5 142 aa7.93□□□□□ -1.14
BRCA1-204ENST00000412061 NPM2Q86SE8 214 aaKnown RBP7.93□□□□□ -1.14
BRCA1-204ENST00000412061 USB1Q9BQ65 265 aaKnown RBP7.93□□□□□ -1.14
BRCA1-204ENST00000412061 TRIM34Q9BYJ4 488 aa7.93□□□□□ -1.14
BRCA1-204ENST00000412061 FMNL1O95466 1100 aaPredicted RBP7.92□□□□□ -1.14
BRCA1-204ENST00000412061 BRICD5Q6PL45 260 aa7.92□□□□□ -1.14
BRCA1-204ENST00000412061 SCUBE3Q8IX30 993 aa7.92□□□□□ -1.14
BRCA1-204ENST00000412061 CCDC97Q96F63 343 aaPredicted RBP7.92□□□□□ -1.14
BRCA1-204ENST00000412061 SERPINA10Q9UK55 444 aa7.91□□□□□ -1.14
BRCA1-204ENST00000412061 LCE2BO14633 110 aa7.9□□□□□ -1.14
BRCA1-204ENST00000412061 PER1O15534 1290 aaPredicted RBP7.9□□□□□ -1.14
BRCA1-204ENST00000412061 WASHC4Q2M389 1173 aa7.9□□□□□ -1.14
BRCA1-204ENST00000412061 LYPD8Q6UX82 237 aa7.9□□□□□ -1.14
BRCA1-204ENST00000412061 THAP11Q96EK4 314 aa7.9□□□□□ -1.14
BRCA1-204ENST00000412061 IRF5Q13568 498 aa7.89□□□□□ -1.15
BRCA1-204ENST00000412061 PNMA1Q8ND90 353 aa7.89□□□□□ -1.15
BRCA1-204ENST00000412061 NR6A1Q15406 480 aa7.88□□□□□ -1.15
BRCA1-204ENST00000412061 EPS8L1Q8TE68 723 aa7.88□□□□□ -1.15
BRCA1-204ENST00000412061 POM121CA8CG34 1229 aa7.87□□□□□ -1.15
BRCA1-204ENST00000412061 GPR37L1O60883 481 aa7.87□□□□□ -1.15
BRCA1-204ENST00000412061 JUNDP17535 347 aa7.87□□□□□ -1.15
BRCA1-204ENST00000412061 CALR3Q96L12 384 aaKnown RBP7.87□□□□□ -1.15
BRCA1-204ENST00000412061 COPS2P61201 443 aa7.86□□□□□ -1.15
BRCA1-204ENST00000412061 PTPRNQ16849 979 aa7.86□□□□□ -1.15
BRCA1-204ENST00000412061 MSS51Q4VC12 460 aa7.86□□□□□ -1.15
BRCA1-204ENST00000412061 SPSB2Q99619 263 aa7.86□□□□□ -1.15
BRCA1-204ENST00000412061 GLMNQ92990 594 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms