RNA–Protein interactions for RNA: ENST00000409248.8

C4orf48-201, Transcript of chromosome 4 open reading frame 48, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene C4orf48, Length 433 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4orf48-201ENST00000409248 PLEKHH1Q9ULM0 1364 aa29.85■■■□□ 2.37
C4orf48-201ENST00000409248 TONSLQ96HA7 1378 aa29.84■■■□□ 2.37
C4orf48-201ENST00000409248 PHLPP1O60346 1717 aa29.83■■■□□ 2.37
C4orf48-201ENST00000409248 ARHGEF28Q8N1W1 1705 aaKnown RBP29.82■■■□□ 2.36
C4orf48-201ENST00000409248 AHDC1Q5TGY3 1603 aaPredicted RBP29.82■■■□□ 2.36
C4orf48-201ENST00000409248 PRAM1Q96QH2 718 aa29.8■■■□□ 2.36
C4orf48-201ENST00000409248 C1orf167Q5SNV9 1468 aa29.8■■■□□ 2.36
C4orf48-201ENST00000409248 TRPM1Q7Z4N2 1603 aa29.79■■■□□ 2.36
C4orf48-201ENST00000409248 POGKQ9P215 609 aa29.79■■■□□ 2.36
C4orf48-201ENST00000409248 TRAK1Q9UPV9 953 aa29.79■■■□□ 2.36
C4orf48-201ENST00000409248 ADGRB2O60241 1585 aa29.78■■■□□ 2.36
C4orf48-201ENST00000409248 FMN2Q9NZ56 1722 aa29.78■■■□□ 2.36
C4orf48-201ENST00000409248 BRINP3Q76B58 766 aa29.77■■■□□ 2.36
C4orf48-201ENST00000409248 NHSL1Q5SYE7 1610 aa29.76■■■□□ 2.35
C4orf48-201ENST00000409248 COL16A1Q07092 1604 aaPredicted RBP29.75■■■□□ 2.35
C4orf48-201ENST00000409248 SAFB2Q14151 953 aaKnown RBP eCLIP29.72■■■□□ 2.35
C4orf48-201ENST00000409248 TIMELESSQ9UNS1 1208 aa29.71■■■□□ 2.35
C4orf48-201ENST00000409248 NBPF1Q3BBV0 1214 aa29.7■■■□□ 2.35
C4orf48-201ENST00000409248 ROCK2O75116 1388 aaKnown RBP29.67■■■□□ 2.34
C4orf48-201ENST00000409248 KIF1AQ12756 1690 aa29.66■■■□□ 2.34
C4orf48-201ENST00000409248 EIF3AQ14152 1382 aaKnown RBP29.66■■■□□ 2.34
C4orf48-201ENST00000409248 MED1Q15648 1581 aaPredicted RBP29.65■■■□□ 2.34
C4orf48-201ENST00000409248 MINK1Q8N4C8 1332 aaPredicted RBP29.64■■■□□ 2.34
C4orf48-201ENST00000409248 JCADQ9P266 1359 aa29.64■■■□□ 2.33
C4orf48-201ENST00000409248 ANKARQ7Z5J8 1434 aa29.62■■■□□ 2.33
C4orf48-201ENST00000409248 RALGAPBQ86X10 1494 aa29.62■■■□□ 2.33
C4orf48-201ENST00000409248 ORAI2Q96SN7 254 aa29.62■■■□□ 2.33
C4orf48-201ENST00000409248 SHPRHQ149N8 1683 aa29.62■■■□□ 2.33
C4orf48-201ENST00000409248 ESCO1Q5FWF5 840 aa29.61■■■□□ 2.33
C4orf48-201ENST00000409248 TULP4Q9NRJ4 1543 aa29.61■■■□□ 2.33
C4orf48-201ENST00000409248 QRICH2Q9H0J4 1663 aa29.6■■■□□ 2.33
C4orf48-201ENST00000409248 NUTM2FA1L443 756 aa29.6■■■□□ 2.33
C4orf48-201ENST00000409248 NBPF8Q3BBV2 869 aa29.6■■■□□ 2.33
C4orf48-201ENST00000409248 HIRIP3Q9BW71 556 aaPredicted RBP29.6■■■□□ 2.33
C4orf48-201ENST00000409248 GPRASP1Q5JY77 1395 aa29.6■■■□□ 2.33
C4orf48-201ENST00000409248 RGPD8O14715 1765 aaPredicted RBP29.59■■■□□ 2.33
C4orf48-201ENST00000409248 USP32Q8NFA0 1604 aa29.58■■■□□ 2.33
C4orf48-201ENST00000409248 NPHP3Q7Z494 1330 aa29.57■■■□□ 2.32
C4orf48-201ENST00000409248 CENPJQ9HC77 1338 aaPredicted RBP29.57■■■□□ 2.32
C4orf48-201ENST00000409248 ITSN1Q15811 1721 aa29.55■■■□□ 2.32
C4orf48-201ENST00000409248 WASLO00401 505 aaPredicted RBP29.55■■■□□ 2.32
C4orf48-201ENST00000409248 DISP3Q9P2K9 1392 aa29.54■■■□□ 2.32
C4orf48-201ENST00000409248 DDX17Q92841 729 aaKnown RBP29.53■■■□□ 2.32
C4orf48-201ENST00000409248 SOS2Q07890 1332 aaPredicted RBP29.52■■■□□ 2.32
C4orf48-201ENST00000409248 LRRC59Q96AG4 307 aaKnown RBP29.52■■■□□ 2.32
C4orf48-201ENST00000409248 SPATA31A6Q5VVP1 1343 aa29.5■■■□□ 2.31
C4orf48-201ENST00000409248 PXDNQ92626 1479 aa29.5■■■□□ 2.31
C4orf48-201ENST00000409248 CARD11Q9BXL7 1154 aa29.49■■■□□ 2.31
C4orf48-201ENST00000409248 PHF8Q9UPP1 1060 aa29.49■■■□□ 2.31
C4orf48-201ENST00000409248 ATP7BP35670 1465 aa29.48■■■□□ 2.31
C4orf48-201ENST00000409248 FOXO3O43524 673 aa29.47■■■□□ 2.31
C4orf48-201ENST00000409248 TOPAZ1Q8N9V7 1692 aa29.46■■■□□ 2.31
C4orf48-201ENST00000409248 PRR36Q9H6K5 1346 aa29.45■■■□□ 2.31
C4orf48-201ENST00000409248 PNPLA6Q8IY17 1366 aa29.45■■■□□ 2.31
C4orf48-201ENST00000409248 PHF23Q9BUL5 403 aaPredicted RBP29.43■■■□□ 2.3
C4orf48-201ENST00000409248 CDK19Q9BWU1 502 aa29.43■■■□□ 2.3
C4orf48-201ENST00000409248 COL22A1Q8NFW1 1626 aaPredicted RBP29.42■■■□□ 2.3
C4orf48-201ENST00000409248 XPCQ01831 940 aaPredicted RBP29.4■■■□□ 2.3
C4orf48-201ENST00000409248 NUDT16Q96DE0 195 aaKnown RBP29.4■■■□□ 2.3
C4orf48-201ENST00000409248 LRP6O75581 1613 aa29.4■■■□□ 2.3
C4orf48-201ENST00000409248 SBNO2Q9Y2G9 1366 aa29.39■■■□□ 2.3
C4orf48-201ENST00000409248 SRPK2P78362 688 aaKnown RBP29.38■■■□□ 2.29
C4orf48-201ENST00000409248 EVC2Q86UK5 1308 aa29.38■■■□□ 2.29
C4orf48-201ENST00000409248 ZEB1P37275 1124 aaPredicted RBP29.37■■■□□ 2.29
C4orf48-201ENST00000409248 PSME1Q06323 249 aa29.37■■■□□ 2.29
C4orf48-201ENST00000409248 PMFBP1Q8TBY8 1022 aa29.37■■■□□ 2.29
C4orf48-201ENST00000409248 KRT28Q7Z3Y7 464 aa29.36■■■□□ 2.29
C4orf48-201ENST00000409248 TNS3Q68CZ2 1445 aa29.36■■■□□ 2.29
C4orf48-201ENST00000409248 SBNO1A3KN83 1393 aa29.35■■■□□ 2.29
C4orf48-201ENST00000409248 MEX3CQ5U5Q3 659 aaKnown RBP29.34■■■□□ 2.29
C4orf48-201ENST00000409248 CCDC61Q9Y6R9 512 aa29.34■■■□□ 2.29
C4orf48-201ENST00000409248 TRPM3Q9HCF6 1732 aaPredicted RBP29.34■■■□□ 2.29
C4orf48-201ENST00000409248 NGDNQ8NEJ9 315 aaKnown RBP29.33■■■□□ 2.29
C4orf48-201ENST00000409248 SPATA31A3Q5VYP0 1347 aa29.32■■■□□ 2.28
C4orf48-201ENST00000409248 NUTM2BA6NNL0 878 aaPredicted RBP29.32■■■□□ 2.28
C4orf48-201ENST00000409248 NUTM2EB1AL46 878 aaPredicted RBP29.32■■■□□ 2.28
C4orf48-201ENST00000409248 NUTM2AQ8IVF1 878 aaPredicted RBP29.32■■■□□ 2.28
C4orf48-201ENST00000409248 PPIP5K1Q6PFW1 1433 aa29.3■■■□□ 2.28
C4orf48-201ENST00000409248 CABP2Q9NPB3 220 aa29.3■■■□□ 2.28
C4orf48-201ENST00000409248 ARHGEF10O15013 1369 aa29.29■■■□□ 2.28
C4orf48-201ENST00000409248 POLR3AO14802 1390 aaPredicted RBP29.28■■■□□ 2.28
C4orf48-201ENST00000409248 ALS2Q96Q42 1657 aa29.27■■■□□ 2.28
C4orf48-201ENST00000409248 ATAD2Q6PL18 1390 aa29.26■■■□□ 2.28
C4orf48-201ENST00000409248 USP47Q96K76 1375 aa29.26■■■□□ 2.28
C4orf48-201ENST00000409248 PLEKHG3A1L390 1219 aa29.26■■■□□ 2.27
C4orf48-201ENST00000409248 ACEP12821 1306 aa29.23■■■□□ 2.27
C4orf48-201ENST00000409248 MARF1Q9Y4F3 1742 aaKnown RBP29.23■■■□□ 2.27
C4orf48-201ENST00000409248 SLC24A1O60721 1099 aa29.22■■■□□ 2.27
C4orf48-201ENST00000409248 ABCA3Q99758 1704 aa29.22■■■□□ 2.27
C4orf48-201ENST00000409248 LMOD2Q6P5Q4 547 aa29.21■■■□□ 2.27
C4orf48-201ENST00000409248 ST20-MTHFSA0A0A6YYL1 179 aa29.2■■■□□ 2.26
C4orf48-201ENST00000409248 ADAMTS2O95450 1211 aa29.18■■■□□ 2.26
C4orf48-201ENST00000409248 PAK3O75914 559 aaPredicted RBP29.17■■■□□ 2.26
C4orf48-201ENST00000409248 RGS17Q9UGC6 210 aaPredicted RBP29.17■■■□□ 2.26
C4orf48-201ENST00000409248 BRD4O60885 1362 aaPredicted RBP29.16■■■□□ 2.26
C4orf48-201ENST00000409248 C8orf37Q96NL8 207 aa29.16■■■□□ 2.26
C4orf48-201ENST00000409248 TESK2Q96S53 571 aa29.16■■■□□ 2.26
C4orf48-201ENST00000409248 CABP1Q9NZU7 370 aa29.16■■■□□ 2.26
C4orf48-201ENST00000409248 AKAP12Q02952 1782 aa29.16■■■□□ 2.26
C4orf48-201ENST00000409248 HAP1P54257 671 aaPredicted RBP29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms