RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SLC19A1P41440 591 aa8.01□□□□□ -1.13
HMGB1-204ENST00000399489 GRIPAP1Q4V328 841 aa8.01□□□□□ -1.13
HMGB1-204ENST00000399489 ANKLE1Q8NAG6 615 aa8.01□□□□□ -1.13
HMGB1-204ENST00000399489 SLC6A16Q9GZN6 736 aa8.01□□□□□ -1.13
HMGB1-204ENST00000399489 RNF223E7ERA6 249 aa8□□□□□ -1.13
HMGB1-204ENST00000399489 RASSF7Q02833 373 aa8□□□□□ -1.13
HMGB1-204ENST00000399489 MAP2K5Q13163 448 aa8□□□□□ -1.13
HMGB1-204ENST00000399489 SPRYD7Q5W111 196 aa8□□□□□ -1.13
HMGB1-204ENST00000399489 GDF9O60383 454 aa7.99□□□□□ -1.13
HMGB1-204ENST00000399489 S1PR4O95977 384 aa7.99□□□□□ -1.13
HMGB1-204ENST00000399489 ATP6V1AP38606 617 aa7.99□□□□□ -1.13
HMGB1-204ENST00000399489 SCUBE3Q8IX30 993 aa7.99□□□□□ -1.13
HMGB1-204ENST00000399489 PUS10Q3MIT2 529 aaKnown RBP7.98□□□□□ -1.13
HMGB1-204ENST00000399489 SPSB2Q99619 263 aa7.98□□□□□ -1.13
HMGB1-204ENST00000399489 AVPP01185 164 aa7.98□□□□□ -1.13
HMGB1-204ENST00000399489 GCGRP47871 477 aa7.98□□□□□ -1.13
HMGB1-204ENST00000399489 MINK1Q8N4C8 1332 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-204ENST00000399489 FMNL1O95466 1100 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-204ENST00000399489 NLRP7Q8WX94 980 aa7.97□□□□□ -1.13
HMGB1-204ENST00000399489 FUT2Q10981 343 aa7.96□□□□□ -1.14
HMGB1-204ENST00000399489 AXIN1O15169 862 aa7.95□□□□□ -1.14
HMGB1-204ENST00000399489 CTC1Q2NKJ3 1217 aa7.95□□□□□ -1.14
HMGB1-204ENST00000399489 MORN1Q5T089 497 aa7.95□□□□□ -1.14
HMGB1-204ENST00000399489 KRI1Q8N9T8 703 aaKnown RBP7.95□□□□□ -1.14
HMGB1-204ENST00000399489 KRTAP17-1Q9BYP8 105 aa7.95□□□□□ -1.14
HMGB1-204ENST00000399489 PPEF1O14829 653 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-204ENST00000399489 IRF6O14896 467 aa7.95□□□□□ -1.14
HMGB1-204ENST00000399489 ADAM23O75077 832 aa7.94□□□□□ -1.14
HMGB1-204ENST00000399489 SMCPP49901 116 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-204ENST00000399489 Q3C1V9 767 aa7.93□□□□□ -1.14
HMGB1-204ENST00000399489 IRF7Q92985 503 aa7.93□□□□□ -1.14
HMGB1-204ENST00000399489 PHOX2BQ99453 314 aa7.93□□□□□ -1.14
HMGB1-204ENST00000399489 TPRNQ4KMQ1 711 aa7.92□□□□□ -1.14
HMGB1-204ENST00000399489 ZNF697Q5TEC3 545 aa7.92□□□□□ -1.14
HMGB1-204ENST00000399489 SLC27A5Q9Y2P5 690 aa7.92□□□□□ -1.14
HMGB1-204ENST00000399489 SALL2Q9Y467 1007 aaPredicted RBP7.92□□□□□ -1.14
HMGB1-204ENST00000399489 MDM2Q00987 491 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-204ENST00000399489 EMID1Q96A84 441 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-204ENST00000399489 CD46P15529 392 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 CLCN1P35523 988 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 USP46P62068 366 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 GPAT2Q6NUI2 795 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 LIAT1Q6ZQX7 453 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 CCDC102AQ96A19 550 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 TIMELESSQ9UNS1 1208 aa7.9□□□□□ -1.14
HMGB1-204ENST00000399489 TNFRSF10AO00220 468 aa7.89□□□□□ -1.15
HMGB1-204ENST00000399489 KDM4AO75164 1064 aa7.89□□□□□ -1.15
HMGB1-204ENST00000399489 SNRPBP14678 240 aaKnown RBP7.89□□□□□ -1.15
HMGB1-204ENST00000399489 LCE1DQ5T752 114 aa7.89□□□□□ -1.15
HMGB1-204ENST00000399489 ARXQ96QS3 562 aa7.89□□□□□ -1.15
HMGB1-204ENST00000399489 RNF225M0QZC1 329 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-204ENST00000399489 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.89□□□□□ -1.15
HMGB1-204ENST00000399489 Q8N3U1 123 aa7.89□□□□□ -1.15
HMGB1-204ENST00000399489 ZBTB24O43167 697 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-204ENST00000399489 CD2BP2O95400 341 aaKnown RBP7.88□□□□□ -1.15
HMGB1-204ENST00000399489 RPIAP49247 311 aa7.88□□□□□ -1.15
HMGB1-204ENST00000399489 LMOD2Q6P5Q4 547 aa7.88□□□□□ -1.15
HMGB1-204ENST00000399489 BRICD5Q6PL45 260 aa7.88□□□□□ -1.15
HMGB1-204ENST00000399489 THAP11Q96EK4 314 aa7.88□□□□□ -1.15
HMGB1-204ENST00000399489 GPCPD1Q9NPB8 672 aa7.88□□□□□ -1.15
HMGB1-204ENST00000399489 FOXK2Q01167 660 aa7.87□□□□□ -1.15
HMGB1-204ENST00000399489 MSS51Q4VC12 460 aa7.87□□□□□ -1.15
HMGB1-204ENST00000399489 NPAS3Q8IXF0 933 aa7.87□□□□□ -1.15
HMGB1-204ENST00000399489 FCF1Q9Y324 198 aaKnown RBP7.87□□□□□ -1.15
HMGB1-204ENST00000399489 TRIM47Q96LD4 638 aa7.86□□□□□ -1.15
HMGB1-204ENST00000399489 DNMT3AQ9Y6K1 912 aaPredicted RBP7.86□□□□□ -1.15
HMGB1-204ENST00000399489 NUTM1Q86Y26 1132 aa7.86□□□□□ -1.15
HMGB1-204ENST00000399489 SENP2Q9HC62 589 aa7.86□□□□□ -1.15
HMGB1-204ENST00000399489 FAM160A2Q8N612 972 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-204ENST00000399489 PLA2G2CQ5R387 149 aa7.83□□□□□ -1.16
HMGB1-204ENST00000399489 RNF19BQ6ZMZ0 732 aa7.83□□□□□ -1.16
HMGB1-204ENST00000399489 FOXC1Q12948 553 aa7.83□□□□□ -1.16
HMGB1-204ENST00000399489 USB1Q9BQ65 265 aaKnown RBP7.83□□□□□ -1.16
HMGB1-204ENST00000399489 FAM217BQ9NTX9 383 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-204ENST00000399489 NXF1Q9UBU9 619 aaKnown RBP7.83□□□□□ -1.16
HMGB1-204ENST00000399489 KRTAP4-2Q9BYR5 136 aa7.81□□□□□ -1.16
HMGB1-204ENST00000399489 PRDM9Q9NQV7 894 aa7.81□□□□□ -1.16
HMGB1-204ENST00000399489 HOXA2O43364 376 aa7.81□□□□□ -1.16
HMGB1-204ENST00000399489 TTLL12Q14166 644 aaPredicted RBP7.81□□□□□ -1.16
HMGB1-204ENST00000399489 BARGINQ6ZT62 677 aa7.81□□□□□ -1.16
HMGB1-204ENST00000399489 CYP4X1Q8N118 509 aa7.8□□□□□ -1.16
HMGB1-204ENST00000399489 MMP16P51512 607 aa7.79□□□□□ -1.16
HMGB1-204ENST00000399489 KRTAP4-9Q9BYQ8 210 aa7.78□□□□□ -1.16
HMGB1-204ENST00000399489 ZMYND10O75800 440 aa7.78□□□□□ -1.16
HMGB1-204ENST00000399489 SSTR3P32745 418 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-204ENST00000399489 KRTAP19-1Q8IUB9 90 aa7.78□□□□□ -1.16
HMGB1-204ENST00000399489 CCDC24Q8N4L8 307 aa7.78□□□□□ -1.16
HMGB1-204ENST00000399489 ZC3H15Q8WU90 426 aaKnown RBP7.78□□□□□ -1.16
HMGB1-204ENST00000399489 KIFC2Q96AC6 838 aa7.78□□□□□ -1.16
HMGB1-204ENST00000399489 DXOO77932 396 aaKnown RBP7.77□□□□□ -1.17
HMGB1-204ENST00000399489 ATP13A2Q9NQ11 1180 aa7.77□□□□□ -1.17
HMGB1-204ENST00000399489 PKD2L1Q9P0L9 805 aa7.77□□□□□ -1.17
HMGB1-204ENST00000399489 FDX1P10109 184 aa7.76□□□□□ -1.17
HMGB1-204ENST00000399489 TTC24A2A3L6 582 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-204ENST00000399489 JUNDP17535 347 aa7.75□□□□□ -1.17
HMGB1-204ENST00000399489 TRIM32Q13049 653 aa7.75□□□□□ -1.17
HMGB1-204ENST00000399489 DIXDC1Q155Q3 683 aa7.75□□□□□ -1.17
HMGB1-204ENST00000399489 AMHR2Q16671 573 aa7.75□□□□□ -1.17
HMGB1-204ENST00000399489 RETREG3Q86VR2 466 aa7.75□□□□□ -1.17
HMGB1-204ENST00000399489 HLA-CQ95604 372 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms