RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TRAK2O60296 914 aa20.18■□□□□ 0.82
PCDH1-203ENST00000394536 SSH1Q8WYL5 1049 aa20.18■□□□□ 0.82
PCDH1-203ENST00000394536 FOXD4L5Q5VV16 416 aaPredicted RBP20.17■□□□□ 0.82
PCDH1-203ENST00000394536 FOXD4L4Q8WXT5 416 aaPredicted RBP20.17■□□□□ 0.82
PCDH1-203ENST00000394536 CASC1Q6TDU7 716 aa20.17■□□□□ 0.82
PCDH1-203ENST00000394536 ATF7IPQ6VMQ6 1270 aa20.16■□□□□ 0.82
PCDH1-203ENST00000394536 GLIPR1L2Q4G1C9 344 aa20.16■□□□□ 0.82
PCDH1-203ENST00000394536 SHANK2Q9UPX8 1470 aa20.16■□□□□ 0.82
PCDH1-203ENST00000394536 ZBTB7CA1YPR0 619 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 THUMPD2Q9BTF0 503 aaKnown RBP20.15■□□□□ 0.82
PCDH1-203ENST00000394536 TRAPPC8Q9Y2L5 1435 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 SLC4A10Q6U841 1118 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 C14orf37Q86TY3 774 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 TMEM57Q8N5G2 664 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 GPRASP1Q5JY77 1395 aa20.15■□□□□ 0.82
PCDH1-203ENST00000394536 PRKAR2BP31323 418 aa20.14■□□□□ 0.82
PCDH1-203ENST00000394536 BLMP54132 1417 aaPredicted RBP20.14■□□□□ 0.81
PCDH1-203ENST00000394536 FBLN1P23142 703 aa20.14■□□□□ 0.81
PCDH1-203ENST00000394536 TMPOP42166 694 aaKnown RBP20.14■□□□□ 0.81
PCDH1-203ENST00000394536 NOL8Q76FK4 1167 aaKnown RBP20.13■□□□□ 0.81
PCDH1-203ENST00000394536 PRAM1Q96QH2 718 aa20.13■□□□□ 0.81
PCDH1-203ENST00000394536 MAGI2Q86UL8 1455 aa20.13■□□□□ 0.81
PCDH1-203ENST00000394536 EIF4G3O43432 1585 aaKnown RBP20.13■□□□□ 0.81
PCDH1-203ENST00000394536 MCM4P33991 863 aa20.13■□□□□ 0.81
PCDH1-203ENST00000394536 AAMPQ13685 434 aa20.13■□□□□ 0.81
PCDH1-203ENST00000394536 DDX11L8A8MPP1 907 aa20.12■□□□□ 0.81
PCDH1-203ENST00000394536 ASXL1Q8IXJ9 1541 aa20.12■□□□□ 0.81
PCDH1-203ENST00000394536 TRIM27P14373 513 aa20.12■□□□□ 0.81
PCDH1-203ENST00000394536 RAPGEF3O95398 923 aa20.11■□□□□ 0.81
PCDH1-203ENST00000394536 RSPH6AQ9H0K4 717 aa20.11■□□□□ 0.81
PCDH1-203ENST00000394536 DDX49Q9Y6V7 483 aaKnown RBP20.11■□□□□ 0.81
PCDH1-203ENST00000394536 KIF16BQ96L93 1317 aa20.1■□□□□ 0.81
PCDH1-203ENST00000394536 CALD1Q05682 793 aaKnown RBP20.1■□□□□ 0.81
PCDH1-203ENST00000394536 CABP1Q9NZU7 370 aa20.1■□□□□ 0.81
PCDH1-203ENST00000394536 ABCC10Q5T3U5 1492 aa20.1■□□□□ 0.81
PCDH1-203ENST00000394536 ZMYM4Q5VZL5 1548 aa20.09■□□□□ 0.81
PCDH1-203ENST00000394536 PLA2R1Q13018 1463 aa20.09■□□□□ 0.81
PCDH1-203ENST00000394536 TBC1D32Q96NH3 1257 aa20.09■□□□□ 0.81
PCDH1-203ENST00000394536 CEP170Q5SW79 1584 aa20.08■□□□□ 0.81
PCDH1-203ENST00000394536 PTMAP06454 111 aaKnown RBP20.08■□□□□ 0.81
PCDH1-203ENST00000394536 FOXD4L6Q3SYB3 417 aaPredicted RBP20.08■□□□□ 0.81
PCDH1-203ENST00000394536 FOXD4L3Q6VB84 417 aaPredicted RBP20.08■□□□□ 0.81
PCDH1-203ENST00000394536 NOS1P29475 1434 aa20.07■□□□□ 0.8
PCDH1-203ENST00000394536 NUP160Q12769 1436 aa20.07■□□□□ 0.8
PCDH1-203ENST00000394536 PLCB2Q00722 1185 aa20.06■□□□□ 0.8
PCDH1-203ENST00000394536 NINLQ9Y2I6 1382 aa20.06■□□□□ 0.8
PCDH1-203ENST00000394536 ZNF521Q96K83 1311 aa20.06■□□□□ 0.8
PCDH1-203ENST00000394536 FAM43AQ8N2R8 423 aa20.05■□□□□ 0.8
PCDH1-203ENST00000394536 PIK3C2GO75747 1445 aa20.04■□□□□ 0.8
PCDH1-203ENST00000394536 MSNP26038 577 aaKnown RBP20.04■□□□□ 0.8
PCDH1-203ENST00000394536 PLCH2O75038 1416 aa20.03■□□□□ 0.8
PCDH1-203ENST00000394536 ADGBQ8N7X0 1667 aa20.03■□□□□ 0.8
PCDH1-203ENST00000394536 CHD1LQ86WJ1 897 aa20.03■□□□□ 0.8
PCDH1-203ENST00000394536 RTF1Q92541 710 aaKnown RBP20.02■□□□□ 0.8
PCDH1-203ENST00000394536 ARID3AQ99856 593 aa20.02■□□□□ 0.8
PCDH1-203ENST00000394536 C14orf93Q9H972 538 aaKnown RBP20.02■□□□□ 0.79
PCDH1-203ENST00000394536 DUOX2Q9NRD8 1548 aa20.02■□□□□ 0.79
PCDH1-203ENST00000394536 CDK19Q9BWU1 502 aa20.01■□□□□ 0.79
PCDH1-203ENST00000394536 TRIM6-TRIM34B2RNG4 842 aa20■□□□□ 0.79
PCDH1-203ENST00000394536 DNTTIP2Q5QJE6 756 aaKnown RBP20■□□□□ 0.79
PCDH1-203ENST00000394536 NECTIN2Q92692 538 aa20■□□□□ 0.79
PCDH1-203ENST00000394536 COG3Q96JB2 828 aa20■□□□□ 0.79
PCDH1-203ENST00000394536 MRE11P49959 708 aa20■□□□□ 0.79
PCDH1-203ENST00000394536 PANK2Q9BZ23 570 aa20■□□□□ 0.79
PCDH1-203ENST00000394536 GNAI1P63096 354 aa19.99■□□□□ 0.79
PCDH1-203ENST00000394536 TRMT2AQ8IZ69 625 aaKnown RBP19.99■□□□□ 0.79
PCDH1-203ENST00000394536 TWISTNBQ3B726 338 aaPredicted RBP19.99■□□□□ 0.79
PCDH1-203ENST00000394536 DCTN1Q14203 1278 aa19.98■□□□□ 0.79
PCDH1-203ENST00000394536 WDR7Q9Y4E6 1490 aa19.98■□□□□ 0.79
PCDH1-203ENST00000394536 IDI1Q13907 227 aa19.98■□□□□ 0.79
PCDH1-203ENST00000394536 POLR3AO14802 1390 aaPredicted RBP19.98■□□□□ 0.79
PCDH1-203ENST00000394536 MCTP1Q6DN14 999 aa19.98■□□□□ 0.79
PCDH1-203ENST00000394536 LMOD3Q0VAK6 560 aa19.97■□□□□ 0.79
PCDH1-203ENST00000394536 KDM5DQ9BY66 1539 aa19.97■□□□□ 0.79
PCDH1-203ENST00000394536 API5Q9BZZ5 524 aaKnown RBP19.96■□□□□ 0.79
PCDH1-203ENST00000394536 RRS1Q15050 365 aaKnown RBP19.96■□□□□ 0.79
PCDH1-203ENST00000394536 WAPLQ7Z5K2 1190 aa19.96■□□□□ 0.79
PCDH1-203ENST00000394536 CT47B1P0C2W7 299 aaPredicted RBP19.96■□□□□ 0.79
PCDH1-203ENST00000394536 RILPL2Q969X0 211 aa19.95■□□□□ 0.78
PCDH1-203ENST00000394536 ST18O60284 1047 aa19.95■□□□□ 0.78
PCDH1-203ENST00000394536 HAP1P54257 671 aaPredicted RBP19.95■□□□□ 0.78
PCDH1-203ENST00000394536 GRPEL1Q9HAV7 217 aa19.95■□□□□ 0.78
PCDH1-203ENST00000394536 XRCC6P12956 609 aaKnown RBP eCLIP19.94■□□□□ 0.78
PCDH1-203ENST00000394536 SKOR2Q2VWA4 1001 aaPredicted RBP19.94■□□□□ 0.78
PCDH1-203ENST00000394536 ADGRL1O94910 1474 aa19.94■□□□□ 0.78
PCDH1-203ENST00000394536 LTV1Q96GA3 475 aaPredicted RBP19.94■□□□□ 0.78
PCDH1-203ENST00000394536 INSRP06213 1382 aa19.93■□□□□ 0.78
PCDH1-203ENST00000394536 CDC45O75419 566 aa19.93■□□□□ 0.78
PCDH1-203ENST00000394536 OS9Q13438 667 aaPredicted RBP19.93■□□□□ 0.78
PCDH1-203ENST00000394536 FANCAO15360 1455 aa19.92■□□□□ 0.78
PCDH1-203ENST00000394536 FYB1O15117 783 aa19.92■□□□□ 0.78
PCDH1-203ENST00000394536 HSP90AA2PQ14568 343 aaPredicted RBP19.92■□□□□ 0.78
PCDH1-203ENST00000394536 RBM42Q9BTD8 480 aaKnown RBP19.92■□□□□ 0.78
PCDH1-203ENST00000394536 EMILIN1Q9Y6C2 1016 aa19.92■□□□□ 0.78
PCDH1-203ENST00000394536 SAMD9LQ8IVG5 1584 aa19.92■□□□□ 0.78
PCDH1-203ENST00000394536 STK31Q9BXU1 1019 aa19.92■□□□□ 0.78
PCDH1-203ENST00000394536 EIF2AK4Q9P2K8 1649 aaKnown RBP19.92■□□□□ 0.78
PCDH1-203ENST00000394536 HMMRO75330 724 aa19.91■□□□□ 0.78
PCDH1-203ENST00000394536 FCHSD2O94868 740 aa19.91■□□□□ 0.78
PCDH1-203ENST00000394536 TNPO1Q92973 898 aaKnown RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms