RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 ADGRB1O14514 1584 aa24.5■■□□□ 1.51
HMGN4-201ENST00000377575 KDM2AQ9Y2K7 1162 aa24.5■■□□□ 1.51
HMGN4-201ENST00000377575 FMN2Q9NZ56 1722 aa24.49■■□□□ 1.51
HMGN4-201ENST00000377575 WAPLQ7Z5K2 1190 aa24.48■■□□□ 1.51
HMGN4-201ENST00000377575 SIRT1Q96EB6 747 aa24.48■■□□□ 1.51
HMGN4-201ENST00000377575 PLEKHH1Q9ULM0 1364 aa24.48■■□□□ 1.51
HMGN4-201ENST00000377575 SPATA31A6Q5VVP1 1343 aa24.46■■□□□ 1.51
HMGN4-201ENST00000377575 KIAA1210Q9ULL0 1709 aa24.45■■□□□ 1.5
HMGN4-201ENST00000377575 KIF1AQ12756 1690 aa24.42■■□□□ 1.5
HMGN4-201ENST00000377575 ADGRB2O60241 1585 aa24.42■■□□□ 1.5
HMGN4-201ENST00000377575 ORAI2Q96SN7 254 aa24.41■■□□□ 1.5
HMGN4-201ENST00000377575 ARHGEF28Q8N1W1 1705 aaKnown RBP24.41■■□□□ 1.5
HMGN4-201ENST00000377575 LRP6O75581 1613 aa24.4■■□□□ 1.5
HMGN4-201ENST00000377575 LRRC59Q96AG4 307 aaKnown RBP24.4■■□□□ 1.5
HMGN4-201ENST00000377575 PRAM1Q96QH2 718 aa24.4■■□□□ 1.5
HMGN4-201ENST00000377575 DDX17Q92841 729 aaKnown RBP24.39■■□□□ 1.49
HMGN4-201ENST00000377575 POGKQ9P215 609 aa24.38■■□□□ 1.49
HMGN4-201ENST00000377575 RGPD8O14715 1765 aaPredicted RBP24.37■■□□□ 1.49
HMGN4-201ENST00000377575 ESCO1Q5FWF5 840 aa24.37■■□□□ 1.49
HMGN4-201ENST00000377575 SOCS7O14512 581 aa24.36■■□□□ 1.49
HMGN4-201ENST00000377575 TRIM26Q12899 539 aaPredicted RBP24.36■■□□□ 1.49
HMGN4-201ENST00000377575 TRAK1Q9UPV9 953 aa24.36■■□□□ 1.49
HMGN4-201ENST00000377575 SOS2Q07890 1332 aaPredicted RBP24.35■■□□□ 1.49
HMGN4-201ENST00000377575 NPHP3Q7Z494 1330 aa24.35■■□□□ 1.49
HMGN4-201ENST00000377575 PNPLA6Q8IY17 1366 aa24.35■■□□□ 1.49
HMGN4-201ENST00000377575 SAFB2Q14151 953 aaKnown RBP eCLIP24.35■■□□□ 1.49
HMGN4-201ENST00000377575 MEX3CQ5U5Q3 659 aaKnown RBP24.35■■□□□ 1.49
HMGN4-201ENST00000377575 NUTM2FA1L443 756 aa24.33■■□□□ 1.49
HMGN4-201ENST00000377575 RGS17Q9UGC6 210 aaPredicted RBP24.33■■□□□ 1.49
HMGN4-201ENST00000377575 PXDNQ92626 1479 aa24.32■■□□□ 1.48
HMGN4-201ENST00000377575 COL22A1Q8NFW1 1626 aaPredicted RBP24.32■■□□□ 1.48
HMGN4-201ENST00000377575 ANKARQ7Z5J8 1434 aa24.3■■□□□ 1.48
HMGN4-201ENST00000377575 USP32Q8NFA0 1604 aa24.3■■□□□ 1.48
HMGN4-201ENST00000377575 EIF3AQ14152 1382 aaKnown RBP24.29■■□□□ 1.48
HMGN4-201ENST00000377575 NUTM2BA6NNL0 878 aaPredicted RBP24.29■■□□□ 1.48
HMGN4-201ENST00000377575 NUTM2EB1AL46 878 aaPredicted RBP24.29■■□□□ 1.48
HMGN4-201ENST00000377575 NUTM2AQ8IVF1 878 aaPredicted RBP24.29■■□□□ 1.48
HMGN4-201ENST00000377575 FOXO3O43524 673 aa24.27■■□□□ 1.48
HMGN4-201ENST00000377575 TULP4Q9NRJ4 1543 aa24.26■■□□□ 1.47
HMGN4-201ENST00000377575 SIN3AQ96ST3 1273 aa24.26■■□□□ 1.47
HMGN4-201ENST00000377575 ITSN1Q15811 1721 aa24.26■■□□□ 1.47
HMGN4-201ENST00000377575 TRPM1Q7Z4N2 1603 aa24.25■■□□□ 1.47
HMGN4-201ENST00000377575 L3MBTL2Q969R5 705 aa24.25■■□□□ 1.47
HMGN4-201ENST00000377575 MINK1Q8N4C8 1332 aaPredicted RBP24.25■■□□□ 1.47
HMGN4-201ENST00000377575 NEUROD1Q13562 356 aa24.24■■□□□ 1.47
HMGN4-201ENST00000377575 HIRIP3Q9BW71 556 aaPredicted RBP24.24■■□□□ 1.47
HMGN4-201ENST00000377575 ZNF772Q68DY9 489 aaPredicted RBP24.23■■□□□ 1.47
HMGN4-201ENST00000377575 POTEAQ6S8J7 498 aa24.23■■□□□ 1.47
HMGN4-201ENST00000377575 PHF8Q9UPP1 1060 aa24.23■■□□□ 1.47
HMGN4-201ENST00000377575 XPCQ01831 940 aaPredicted RBP24.22■■□□□ 1.47
HMGN4-201ENST00000377575 MARF1Q9Y4F3 1742 aaKnown RBP24.21■■□□□ 1.47
HMGN4-201ENST00000377575 WASLO00401 505 aaPredicted RBP24.2■■□□□ 1.46
HMGN4-201ENST00000377575 QRICH2Q9H0J4 1663 aa24.19■■□□□ 1.46
HMGN4-201ENST00000377575 NBPF1Q3BBV0 1214 aa24.19■■□□□ 1.46
HMGN4-201ENST00000377575 C8orf37Q96NL8 207 aa24.17■■□□□ 1.46
HMGN4-201ENST00000377575 TNS3Q68CZ2 1445 aa24.17■■□□□ 1.46
HMGN4-201ENST00000377575 AFF2P51816 1311 aa24.16■■□□□ 1.46
HMGN4-201ENST00000377575 PSME1Q06323 249 aa24.16■■□□□ 1.46
HMGN4-201ENST00000377575 KRT28Q7Z3Y7 464 aa24.16■■□□□ 1.46
HMGN4-201ENST00000377575 SPATA31A3Q5VYP0 1347 aa24.15■■□□□ 1.46
HMGN4-201ENST00000377575 TOPAZ1Q8N9V7 1692 aa24.15■■□□□ 1.46
HMGN4-201ENST00000377575 ATP7BP35670 1465 aa24.15■■□□□ 1.46
HMGN4-201ENST00000377575 ADAMTS2O95450 1211 aa24.14■■□□□ 1.45
HMGN4-201ENST00000377575 TRPM3Q9HCF6 1732 aaPredicted RBP24.14■■□□□ 1.45
HMGN4-201ENST00000377575 SBNO1A3KN83 1393 aa24.14■■□□□ 1.45
HMGN4-201ENST00000377575 PRR36Q9H6K5 1346 aa24.13■■□□□ 1.45
HMGN4-201ENST00000377575 ROCK2O75116 1388 aaKnown RBP24.13■■□□□ 1.45
HMGN4-201ENST00000377575 TONSLQ96HA7 1378 aa24.13■■□□□ 1.45
HMGN4-201ENST00000377575 CENPJQ9HC77 1338 aaPredicted RBP24.12■■□□□ 1.45
HMGN4-201ENST00000377575 PMFBP1Q8TBY8 1022 aa24.12■■□□□ 1.45
HMGN4-201ENST00000377575 ABCA3Q99758 1704 aa24.12■■□□□ 1.45
HMGN4-201ENST00000377575 NGLY1Q96IV0 654 aa24.1■■□□□ 1.45
HMGN4-201ENST00000377575 ARHGEF10O15013 1369 aa24.1■■□□□ 1.45
HMGN4-201ENST00000377575 GPRASP1Q5JY77 1395 aa24.1■■□□□ 1.45
HMGN4-201ENST00000377575 ALS2Q96Q42 1657 aa24.09■■□□□ 1.45
HMGN4-201ENST00000377575 CDK19Q9BWU1 502 aa24.08■■□□□ 1.45
HMGN4-201ENST00000377575 NUDT16Q96DE0 195 aaKnown RBP24.07■■□□□ 1.44
HMGN4-201ENST00000377575 NGDNQ8NEJ9 315 aaKnown RBP24.06■■□□□ 1.44
HMGN4-201ENST00000377575 CDK12Q9NYV4 1490 aaPredicted RBP24.06■■□□□ 1.44
HMGN4-201ENST00000377575 RXRBP28702 533 aa24.05■■□□□ 1.44
HMGN4-201ENST00000377575 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.04■■□□□ 1.44
HMGN4-201ENST00000377575 LMOD2Q6P5Q4 547 aa24.04■■□□□ 1.44
HMGN4-201ENST00000377575 RALGAPBQ86X10 1494 aa24.03■■□□□ 1.44
HMGN4-201ENST00000377575 HAP1P54257 671 aaPredicted RBP24.03■■□□□ 1.44
HMGN4-201ENST00000377575 FNBP4Q8N3X1 1017 aaPredicted RBP24.02■■□□□ 1.44
HMGN4-201ENST00000377575 USP21Q9UK80 565 aa24.02■■□□□ 1.44
HMGN4-201ENST00000377575 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
HMGN4-201ENST00000377575 NBPF8Q3BBV2 869 aa24.01■■□□□ 1.43
HMGN4-201ENST00000377575 QTRT2Q9H974 415 aaKnown RBP24.01■■□□□ 1.43
HMGN4-201ENST00000377575 CCDC61Q9Y6R9 512 aa24.01■■□□□ 1.43
HMGN4-201ENST00000377575 PLCH1Q4KWH8 1693 aa24■■□□□ 1.43
HMGN4-201ENST00000377575 CRYBG1Q9Y4K1 1723 aa24■■□□□ 1.43
HMGN4-201ENST00000377575 POLR3AO14802 1390 aaPredicted RBP24■■□□□ 1.43
HMGN4-201ENST00000377575 NWD2Q9ULI1 1742 aa23.98■■□□□ 1.43
HMGN4-201ENST00000377575 RBM6P78332 1123 aaKnown RBP23.98■■□□□ 1.43
HMGN4-201ENST00000377575 TRPC5Q9UL62 973 aaPredicted RBP23.98■■□□□ 1.43
HMGN4-201ENST00000377575 PPIP5K1Q6PFW1 1433 aa23.98■■□□□ 1.43
HMGN4-201ENST00000377575 ATRNO75882 1429 aa23.97■■□□□ 1.43
HMGN4-201ENST00000377575 BCL9LQ86UU0 1499 aa23.96■■□□□ 1.43
HMGN4-201ENST00000377575 EVC2Q86UK5 1308 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms