RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 A0A0U1RQG5 324 aaPredicted RBP16.65■□□□□ 0.26
GPC6-201ENST00000377047 ATP6V1DQ9Y5K8 247 aa16.65■□□□□ 0.26
GPC6-201ENST00000377047 KIF7Q2M1P5 1343 aa16.64■□□□□ 0.25
GPC6-201ENST00000377047 IFT140Q96RY7 1462 aa16.64■□□□□ 0.25
GPC6-201ENST00000377047 HSP90AB4PQ58FF6 505 aa16.64■□□□□ 0.25
GPC6-201ENST00000377047 RNF20Q5VTR2 975 aa16.63■□□□□ 0.25
GPC6-201ENST00000377047 TPM2P07951 284 aa16.63■□□□□ 0.25
GPC6-201ENST00000377047 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
GPC6-201ENST00000377047 WWC1Q8IX03 1113 aa16.63■□□□□ 0.25
GPC6-201ENST00000377047 MTHFSP49914 203 aa16.63■□□□□ 0.25
GPC6-201ENST00000377047 CCDC7Q96M83 1385 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 PLEKHO1Q53GL0 409 aaPredicted RBP16.62■□□□□ 0.25
GPC6-201ENST00000377047 UBTFL1P0CB47 393 aaPredicted RBP16.62■□□□□ 0.25
GPC6-201ENST00000377047 WASHC4Q2M389 1173 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 SCAPERQ9BY12 1400 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 KIF6Q6ZMV9 814 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 ERC2O15083 957 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 TSR1Q2NL82 804 aaKnown RBP16.62■□□□□ 0.25
GPC6-201ENST00000377047 ARID3AQ99856 593 aa16.62■□□□□ 0.25
GPC6-201ENST00000377047 DDX11L8A8MPP1 907 aa16.61■□□□□ 0.25
GPC6-201ENST00000377047 DCAF8L1A6NGE4 600 aa16.61■□□□□ 0.25
GPC6-201ENST00000377047 PDE4AP27815 886 aa16.61■□□□□ 0.25
GPC6-201ENST00000377047 GAS2L2Q8NHY3 880 aa16.61■□□□□ 0.25
GPC6-201ENST00000377047 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
GPC6-201ENST00000377047 GOLGA6L19H0YKK7 550 aa16.6■□□□□ 0.25
GPC6-201ENST00000377047 SLC4A3P48751 1232 aa16.6■□□□□ 0.25
GPC6-201ENST00000377047 SNAPC4Q5SXM2 1469 aa16.6■□□□□ 0.25
GPC6-201ENST00000377047 TATP17735 454 aaPredicted RBP16.59■□□□□ 0.25
GPC6-201ENST00000377047 PPP1R1BQ9UD71 204 aaPredicted RBP16.59■□□□□ 0.25
GPC6-201ENST00000377047 PIP4K2BP78356 416 aa16.59■□□□□ 0.25
GPC6-201ENST00000377047 SF3B2Q13435 895 aaKnown RBP16.59■□□□□ 0.25
GPC6-201ENST00000377047 BECN2A8MW95 431 aa16.59■□□□□ 0.25
GPC6-201ENST00000377047 RAPGEF3O95398 923 aa16.59■□□□□ 0.25
GPC6-201ENST00000377047 FOSBP53539 338 aa16.59■□□□□ 0.25
GPC6-201ENST00000377047 DDX49Q9Y6V7 483 aaKnown RBP16.58■□□□□ 0.25
GPC6-201ENST00000377047 WASHC2AQ641Q2 1341 aa16.58■□□□□ 0.25
GPC6-201ENST00000377047 CDK19Q9BWU1 502 aa16.58■□□□□ 0.25
GPC6-201ENST00000377047 CCDC30Q5VVM6 783 aa16.58■□□□□ 0.24
GPC6-201ENST00000377047 TOM1L2Q6ZVM7 507 aa16.58■□□□□ 0.24
GPC6-201ENST00000377047 CCDC43Q96MW1 224 aaKnown RBP16.58■□□□□ 0.24
GPC6-201ENST00000377047 CFTRP13569 1480 aa16.58■□□□□ 0.24
GPC6-201ENST00000377047 CCDC47Q96A33 483 aaKnown RBP16.57■□□□□ 0.24
GPC6-201ENST00000377047 LNPKQ9C0E8 428 aa16.57■□□□□ 0.24
GPC6-201ENST00000377047 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.57■□□□□ 0.24
GPC6-201ENST00000377047 C9orf84Q5VXU9 1444 aa16.57■□□□□ 0.24
GPC6-201ENST00000377047 ANKLE2Q86XL3 938 aa16.57■□□□□ 0.24
GPC6-201ENST00000377047 INTS3Q68E01 1043 aaKnown RBP16.57■□□□□ 0.24
GPC6-201ENST00000377047 PCMTD1Q96MG8 357 aaPredicted RBP16.57■□□□□ 0.24
GPC6-201ENST00000377047 DDX54Q8TDD1 881 aaKnown RBP16.56■□□□□ 0.24
GPC6-201ENST00000377047 MTMR7Q9Y216 660 aa16.56■□□□□ 0.24
GPC6-201ENST00000377047 PRKAR2BP31323 418 aa16.56■□□□□ 0.24
GPC6-201ENST00000377047 RALYLQ86SE5 291 aaKnown RBP16.56■□□□□ 0.24
GPC6-201ENST00000377047 TPM1P09493 284 aa16.56■□□□□ 0.24
GPC6-201ENST00000377047 PLEKHH2Q8IVE3 1493 aa16.56■□□□□ 0.24
GPC6-201ENST00000377047 PANK1Q8TE04 598 aa16.55■□□□□ 0.24
GPC6-201ENST00000377047 CNTLNQ9NXG0 1405 aa16.55■□□□□ 0.24
GPC6-201ENST00000377047 SLC26A8Q96RN1 970 aa16.55■□□□□ 0.24
GPC6-201ENST00000377047 TSHZ2Q9NRE2 1034 aa16.55■□□□□ 0.24
GPC6-201ENST00000377047 CABP4P57796 275 aa16.54■□□□□ 0.24
GPC6-201ENST00000377047 ADAMTS8Q9UP79 889 aa16.54■□□□□ 0.24
GPC6-201ENST00000377047 GOLGA6L1Q8N7Z2 621 aa16.54■□□□□ 0.24
GPC6-201ENST00000377047 POGZQ7Z3K3 1410 aa16.53■□□□□ 0.24
GPC6-201ENST00000377047 CABP1Q9NZU7 370 aa16.53■□□□□ 0.24
GPC6-201ENST00000377047 VPS37CA5D8V6 355 aaPredicted RBP16.53■□□□□ 0.24
GPC6-201ENST00000377047 IKQ13123 557 aaPredicted RBP16.52■□□□□ 0.24
GPC6-201ENST00000377047 TCP11L2Q8N4U5 519 aa16.52■□□□□ 0.24
GPC6-201ENST00000377047 BICD2Q8TD16 824 aa16.52■□□□□ 0.24
GPC6-201ENST00000377047 TOPBP1Q92547 1522 aa16.52■□□□□ 0.24
GPC6-201ENST00000377047 NBPF1Q3BBV0 1214 aa16.52■□□□□ 0.24
GPC6-201ENST00000377047 SAFBQ15424 915 aaKnown RBP eCLIP16.52■□□□□ 0.23
GPC6-201ENST00000377047 SMC3Q9UQE7 1217 aa16.52■□□□□ 0.23
GPC6-201ENST00000377047 EHBP1L1Q8N3D4 1523 aa16.52■□□□□ 0.23
GPC6-201ENST00000377047 NINLQ9Y2I6 1382 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 DNAJC2Q99543 621 aaKnown RBP16.51■□□□□ 0.23
GPC6-201ENST00000377047 FSD1Q9BTV5 496 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 TBC1D2BQ9UPU7 963 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 SLC52A1Q9NWF4 448 aa16.51■□□□□ 0.23
GPC6-201ENST00000377047 HOOK1Q9UJC3 728 aaKnown RBP16.51■□□□□ 0.23
GPC6-201ENST00000377047 ZNF692Q9BU19 519 aaPredicted RBP16.51■□□□□ 0.23
GPC6-201ENST00000377047 PPP2R1AP30153 589 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 SULT6B1Q6IMI4 303 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 SLC12A5Q9H2X9 1139 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 RTEL1-TNFRSF6BF6WH68 1400 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 KDM4AO75164 1064 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 CNNM1Q9NRU3 951 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 HECW1Q76N89 1606 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 ERICH3Q5RHP9 1530 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 SURF6O75683 361 aaKnown RBP16.5■□□□□ 0.23
GPC6-201ENST00000377047 XPCQ01831 940 aaPredicted RBP16.5■□□□□ 0.23
GPC6-201ENST00000377047 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
GPC6-201ENST00000377047 HFM1A2PYH4 1435 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 GNAI3P08754 354 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 SKOR2Q2VWA4 1001 aaPredicted RBP16.49■□□□□ 0.23
GPC6-201ENST00000377047 CNTROBQ8N137 903 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 ZNF428Q96B54 188 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 ANKRD20A12PQ8NF67 263 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 EFCAB5A4FU69 1503 aa16.49■□□□□ 0.23
GPC6-201ENST00000377047 CLASRPQ8N2M8 674 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms