RNA–Protein interactions for RNA: ENST00000351808.9

IFT88-202, Transcript of intraflagellar transport 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IFT88, Length 2,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-202ENST00000351808 TAF3Q5VWG9 929 aa16.41■□□□□ 0.22
IFT88-202ENST00000351808 KIAA2012Q0VF49 1180 aa16.41■□□□□ 0.22
IFT88-202ENST00000351808 GAS2L2Q8NHY3 880 aa16.41■□□□□ 0.22
IFT88-202ENST00000351808 RBM27Q9P2N5 1060 aaKnown RBP16.41■□□□□ 0.22
IFT88-202ENST00000351808 CLASP1Q7Z460 1538 aa16.41■□□□□ 0.22
IFT88-202ENST00000351808 SAMD9Q5K651 1589 aa16.41■□□□□ 0.22
IFT88-202ENST00000351808 KNSTRNQ9Y448 316 aa16.4■□□□□ 0.22
IFT88-202ENST00000351808 ARHGEF12Q9NZN5 1544 aa16.4■□□□□ 0.22
IFT88-202ENST00000351808 PTMAP06454 111 aaKnown RBP16.4■□□□□ 0.22
IFT88-202ENST00000351808 CLEC17AQ6ZS10 378 aa16.4■□□□□ 0.22
IFT88-202ENST00000351808 COL17A1Q9UMD9 1497 aaPredicted RBP16.4■□□□□ 0.22
IFT88-202ENST00000351808 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
IFT88-202ENST00000351808 K7ELQ4 463 aaPredicted RBP16.4■□□□□ 0.22
IFT88-202ENST00000351808 DNMT1P26358 1616 aaKnown RBP16.39■□□□□ 0.21
IFT88-202ENST00000351808 RARSP54136 660 aaKnown RBP16.39■□□□□ 0.21
IFT88-202ENST00000351808 ZNF771Q7L3S4 317 aaPredicted RBP16.39■□□□□ 0.21
IFT88-202ENST00000351808 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
IFT88-202ENST00000351808 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
IFT88-202ENST00000351808 MPNDQ8N594 471 aa16.39■□□□□ 0.21
IFT88-202ENST00000351808 PRIMPOLQ96LW4 560 aa16.39■□□□□ 0.21
IFT88-202ENST00000351808 KIF2CQ99661 725 aa16.39■□□□□ 0.21
IFT88-202ENST00000351808 LMBRD1Q9NUN5 540 aa16.39■□□□□ 0.21
IFT88-202ENST00000351808 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.39■□□□□ 0.21
IFT88-202ENST00000351808 AK9Q5TCS8 1911 aa16.38■□□□□ 0.21
IFT88-202ENST00000351808 CADPSQ9ULU8 1353 aa16.38■□□□□ 0.21
IFT88-202ENST00000351808 RNF214Q8ND24 703 aa16.38■□□□□ 0.21
IFT88-202ENST00000351808 KIF3AQ9Y496 699 aa16.38■□□□□ 0.21
IFT88-202ENST00000351808 PDCL2Q8N4E4 241 aa16.37■□□□□ 0.21
IFT88-202ENST00000351808 RAD54L2Q9Y4B4 1467 aa16.37■□□□□ 0.21
IFT88-202ENST00000351808 U2AF2P26368 475 aaKnown RBP eCLIP16.37■□□□□ 0.219e-7■■■■□ 24.1
IFT88-202ENST00000351808 GTF2F1P35269 517 aaKnown RBP eCLIP16.37■□□□□ 0.21
IFT88-202ENST00000351808 HMGN5P82970 282 aaKnown RBP16.37■□□□□ 0.21
IFT88-202ENST00000351808 BCL2L12Q9HB09 334 aa16.37■□□□□ 0.21
IFT88-202ENST00000351808 CDK13Q14004 1512 aaKnown RBP16.37■□□□□ 0.21
IFT88-202ENST00000351808 TMF1P82094 1093 aa16.36■□□□□ 0.21
IFT88-202ENST00000351808 SYCE3A1L190 88 aa16.35■□□□□ 0.21
IFT88-202ENST00000351808 ERBINQ96RT1 1412 aa16.34■□□□□ 0.21
IFT88-202ENST00000351808 PRPF40AO75400 957 aaKnown RBP16.34■□□□□ 0.21
IFT88-202ENST00000351808 IRX5P78411 483 aaPredicted RBP16.34■□□□□ 0.21
IFT88-202ENST00000351808 RGL3Q3MIN7 710 aa16.34■□□□□ 0.21
IFT88-202ENST00000351808 WWC1Q8IX03 1113 aa16.34■□□□□ 0.21
IFT88-202ENST00000351808 NUP155O75694 1391 aa16.34■□□□□ 0.21
IFT88-202ENST00000351808 C17orf53Q8N3J3 647 aaPredicted RBP16.34■□□□□ 0.21
IFT88-202ENST00000351808 GPT2Q8TD30 523 aa16.34■□□□□ 0.21
IFT88-202ENST00000351808 KCNJ4P48050 445 aa16.33■□□□□ 0.21
IFT88-202ENST00000351808 NEUROD2Q15784 382 aa16.33■□□□□ 0.21
IFT88-202ENST00000351808 LRSAM1Q6UWE0 723 aa16.33■□□□□ 0.21
IFT88-202ENST00000351808 FTSJ3Q8IY81 847 aaKnown RBP16.33■□□□□ 0.21
IFT88-202ENST00000351808 NOLC1Q14978 699 aaKnown RBP eCLIP16.33■□□□□ 0.2
IFT88-202ENST00000351808 RSPH4AQ5TD94 716 aa16.32■□□□□ 0.2
IFT88-202ENST00000351808 TMEM63CQ9P1W3 806 aa16.32■□□□□ 0.2
IFT88-202ENST00000351808 MAGI2Q86UL8 1455 aa16.32■□□□□ 0.2
IFT88-202ENST00000351808 MVPQ14764 893 aaKnown RBP16.32■□□□□ 0.2
IFT88-202ENST00000351808 FAM135AQ9P2D6 1515 aa16.31■□□□□ 0.2
IFT88-202ENST00000351808 PKP1Q13835 747 aa16.31■□□□□ 0.2
IFT88-202ENST00000351808 NESP48681 1621 aa16.31■□□□□ 0.2
IFT88-202ENST00000351808 PRAG1Q86YV5 1406 aa16.3■□□□□ 0.2
IFT88-202ENST00000351808 PIBF1Q8WXW3 757 aa16.3■□□□□ 0.2
IFT88-202ENST00000351808 CHMP4AQ9BY43 222 aa16.29■□□□□ 0.2
IFT88-202ENST00000351808 ARHGAP31Q2M1Z3 1444 aa16.29■□□□□ 0.2
IFT88-202ENST00000351808 CHAMP1Q96JM3 812 aa16.29■□□□□ 0.2
IFT88-202ENST00000351808 NSFL1CQ9UNZ2 370 aaKnown RBP16.29■□□□□ 0.2
IFT88-202ENST00000351808 CUL7Q14999 1698 aa16.29■□□□□ 0.2
IFT88-202ENST00000351808 KIF16BQ96L93 1317 aa16.28■□□□□ 0.2
IFT88-202ENST00000351808 RRP7AQ9Y3A4 280 aaKnown RBP16.28■□□□□ 0.2
IFT88-202ENST00000351808 NUCB2P80303 420 aa16.28■□□□□ 0.2
IFT88-202ENST00000351808 ZNF777Q9ULD5 760 aaPredicted RBP16.28■□□□□ 0.2
IFT88-202ENST00000351808 ABCC2Q92887 1545 aa16.27■□□□□ 0.2
IFT88-202ENST00000351808 LNPKQ9C0E8 428 aa16.27■□□□□ 0.2
IFT88-202ENST00000351808 TTC12Q9H892 705 aaPredicted RBP16.27■□□□□ 0.2
IFT88-202ENST00000351808 PIK3C2GO75747 1445 aa16.27■□□□□ 0.19
IFT88-202ENST00000351808 TRPM1Q7Z4N2 1603 aa16.27■□□□□ 0.19
IFT88-202ENST00000351808 PLXNC1O60486 1568 aa16.26■□□□□ 0.19
IFT88-202ENST00000351808 ANKRD50Q9ULJ7 1429 aa16.26■□□□□ 0.19
IFT88-202ENST00000351808 HDAC1Q13547 482 aaPredicted RBP16.26■□□□□ 0.19
IFT88-202ENST00000351808 CYP2E1P05181 493 aaPredicted RBP16.25■□□□□ 0.19
IFT88-202ENST00000351808 ABCA10Q8WWZ4 1543 aa16.25■□□□□ 0.19
IFT88-202ENST00000351808 DZIP1LQ8IYY4 767 aaKnown RBP16.25■□□□□ 0.19
IFT88-202ENST00000351808 NGEFQ8N5V2 710 aa16.25■□□□□ 0.19
IFT88-202ENST00000351808 CEP170Q5SW79 1584 aa16.25■□□□□ 0.19
IFT88-202ENST00000351808 GPRASP1Q5JY77 1395 aa16.25■□□□□ 0.19
IFT88-202ENST00000351808 FKBP5Q13451 457 aaPredicted RBP16.24■□□□□ 0.19
IFT88-202ENST00000351808 ANKRD7Q92527 254 aa16.24■□□□□ 0.19
IFT88-202ENST00000351808 WDR7Q9Y4E6 1490 aa16.24■□□□□ 0.19
IFT88-202ENST00000351808 OGFRQ9NZT2 677 aa16.24■□□□□ 0.19
IFT88-202ENST00000351808 RIOK3O14730 519 aaKnown RBP16.24■□□□□ 0.19
IFT88-202ENST00000351808 FEZ1Q99689 392 aa16.24■□□□□ 0.19
IFT88-202ENST00000351808 KDM5DQ9BY66 1539 aa16.23■□□□□ 0.19
IFT88-202ENST00000351808 FANCD2Q9BXW9 1451 aa16.23■□□□□ 0.19
IFT88-202ENST00000351808 SLFN14P0C7P3 912 aa16.23■□□□□ 0.19
IFT88-202ENST00000351808 ZKSCAN2Q63HK3 967 aa16.23■□□□□ 0.19
IFT88-202ENST00000351808 CERS3Q8IU89 383 aa16.23■□□□□ 0.19
IFT88-202ENST00000351808 CFDP1Q9UEE9 299 aaPredicted RBP16.23■□□□□ 0.19
IFT88-202ENST00000351808 ZFP91Q96JP5 570 aaPredicted RBP16.22■□□□□ 0.19
IFT88-202ENST00000351808 GABPB1Q06547 395 aaPredicted RBP16.21■□□□□ 0.19
IFT88-202ENST00000351808 DNAJC2Q99543 621 aaKnown RBP16.21■□□□□ 0.19
IFT88-202ENST00000351808 TSPY26PQ9H489 355 aa16.21■□□□□ 0.19
IFT88-202ENST00000351808 PRDM2Q13029 1718 aa16.21■□□□□ 0.19
IFT88-202ENST00000351808 TBC1D9Q6ZT07 1266 aa16.21■□□□□ 0.19
IFT88-202ENST00000351808 ITPRIPQ8IWB1 547 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms