RNA–Protein interactions for RNA: ENST00000348962.6

PTPRO-202, Transcript of protein tyrosine phosphatase, receptor type O, humanhuman

TSL 1 (best) BASIC

Gene PTPRO, Length 5,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRO-202ENST00000348962 UBTFL1P0CB47 393 aaPredicted RBP18.86■□□□□ 0.61
PTPRO-202ENST00000348962 SMG6Q86US8 1419 aaKnown RBP18.86■□□□□ 0.61
PTPRO-202ENST00000348962 FOXD4L5Q5VV16 416 aaPredicted RBP18.85■□□□□ 0.61
PTPRO-202ENST00000348962 FOXD4L4Q8WXT5 416 aaPredicted RBP18.85■□□□□ 0.61
PTPRO-202ENST00000348962 KIF7Q2M1P5 1343 aa18.85■□□□□ 0.61
PTPRO-202ENST00000348962 TSR1Q2NL82 804 aaKnown RBP18.84■□□□□ 0.61
PTPRO-202ENST00000348962 CCDC47Q96A33 483 aaKnown RBP18.84■□□□□ 0.61
PTPRO-202ENST00000348962 NESP48681 1621 aa18.84■□□□□ 0.61
PTPRO-202ENST00000348962 RTN4Q9NQC3 1192 aaKnown RBP18.84■□□□□ 0.61
PTPRO-202ENST00000348962 CCDC30Q5VVM6 783 aa18.84■□□□□ 0.61
PTPRO-202ENST00000348962 EXOC6Q8TAG9 804 aa18.84■□□□□ 0.61
PTPRO-202ENST00000348962 ANO2Q9NQ90 1003 aa18.84■□□□□ 0.61
PTPRO-202ENST00000348962 NFXL1Q6ZNB6 911 aa18.83■□□□□ 0.61
PTPRO-202ENST00000348962 IPO9Q96P70 1041 aaKnown RBP18.83■□□□□ 0.61
PTPRO-202ENST00000348962 CCDC7Q96M83 1385 aa18.83■□□□□ 0.61
PTPRO-202ENST00000348962 NUTM2BA6NNL0 878 aaPredicted RBP18.83■□□□□ 0.61
PTPRO-202ENST00000348962 NUTM2EB1AL46 878 aaPredicted RBP18.83■□□□□ 0.61
PTPRO-202ENST00000348962 TOM1L2Q6ZVM7 507 aa18.83■□□□□ 0.61
PTPRO-202ENST00000348962 NUTM2AQ8IVF1 878 aaPredicted RBP18.83■□□□□ 0.61
PTPRO-202ENST00000348962 TPM2P07951 284 aa18.83■□□□□ 0.6
PTPRO-202ENST00000348962 KIF6Q6ZMV9 814 aa18.83■□□□□ 0.6
PTPRO-202ENST00000348962 GOLGA6L3A6NEY3 463 aa18.83■□□□□ 0.6
PTPRO-202ENST00000348962 SLC26A8Q96RN1 970 aa18.82■□□□□ 0.6
PTPRO-202ENST00000348962 AAMPQ13685 434 aa18.81■□□□□ 0.6
PTPRO-202ENST00000348962 RALYLQ86SE5 291 aaKnown RBP18.81■□□□□ 0.6
PTPRO-202ENST00000348962 PRDM11Q9NQV5 511 aa18.81■□□□□ 0.6
PTPRO-202ENST00000348962 GNAI3P08754 354 aa18.81■□□□□ 0.6
PTPRO-202ENST00000348962 WASHC4Q2M389 1173 aa18.81■□□□□ 0.6
PTPRO-202ENST00000348962 CCDC27Q2M243 656 aa18.8■□□□□ 0.6
PTPRO-202ENST00000348962 PDE4CQ08493 712 aa18.8■□□□□ 0.6
PTPRO-202ENST00000348962 CCDC43Q96MW1 224 aaKnown RBP18.8■□□□□ 0.6
PTPRO-202ENST00000348962 TROQ12816 1431 aaPredicted RBP18.8■□□□□ 0.6
PTPRO-202ENST00000348962 BECN2A8MW95 431 aa18.8■□□□□ 0.6
PTPRO-202ENST00000348962 DDX11L8A8MPP1 907 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 C9orf84Q5VXU9 1444 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 CDK19Q9BWU1 502 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 RPGRIP1LQ68CZ1 1315 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 PRKAR2BP31323 418 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 TPM1P09493 284 aa18.79■□□□□ 0.6
PTPRO-202ENST00000348962 HMGB2P26583 209 aaKnown RBP18.79■□□□□ 0.6
PTPRO-202ENST00000348962 FAM177BA6PVY3 158 aa18.78■□□□□ 0.6
PTPRO-202ENST00000348962 GOLGA6L19H0YKK7 550 aa18.78■□□□□ 0.6
PTPRO-202ENST00000348962 CLASRPQ8N2M8 674 aaKnown RBP18.78■□□□□ 0.6
PTPRO-202ENST00000348962 KIF21BO75037 1637 aa18.78■□□□□ 0.6
PTPRO-202ENST00000348962 TBC1D2BQ9UPU7 963 aa18.78■□□□□ 0.6
PTPRO-202ENST00000348962 TCP11L2Q8N4U5 519 aa18.78■□□□□ 0.6
PTPRO-202ENST00000348962 SAFBQ15424 915 aaKnown RBP eCLIP18.77■□□□□ 0.6
PTPRO-202ENST00000348962 INTS3Q68E01 1043 aaKnown RBP18.77■□□□□ 0.6
PTPRO-202ENST00000348962 SPG7Q9UQ90 795 aa18.77■□□□□ 0.6
PTPRO-202ENST00000348962 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.6
PTPRO-202ENST00000348962 CABP1Q9NZU7 370 aa18.77■□□□□ 0.6
PTPRO-202ENST00000348962 PNISRQ8TF01 805 aaKnown RBP18.77■□□□□ 0.59
PTPRO-202ENST00000348962 CABP4P57796 275 aa18.76■□□□□ 0.59
PTPRO-202ENST00000348962 SAMD1Q6SPF0 538 aaPredicted RBP18.76■□□□□ 0.59
PTPRO-202ENST00000348962 TOPBP1Q92547 1522 aa18.76■□□□□ 0.59
PTPRO-202ENST00000348962 DDX54Q8TDD1 881 aaKnown RBP18.76■□□□□ 0.59
PTPRO-202ENST00000348962 PDE4AP27815 886 aa18.76■□□□□ 0.59
PTPRO-202ENST00000348962 ANO8Q9HCE9 1232 aaPredicted RBP18.76■□□□□ 0.59
PTPRO-202ENST00000348962 A0A0U1RQG5 324 aaPredicted RBP18.75■□□□□ 0.59
PTPRO-202ENST00000348962 DDX49Q9Y6V7 483 aaKnown RBP18.75■□□□□ 0.59
PTPRO-202ENST00000348962 ZNF530Q6P9A1 599 aaPredicted RBP18.74■□□□□ 0.59
PTPRO-202ENST00000348962 HOOK1Q9UJC3 728 aaKnown RBP18.74■□□□□ 0.59
PTPRO-202ENST00000348962 RTEL1-TNFRSF6BF6WH68 1400 aa18.74■□□□□ 0.59
PTPRO-202ENST00000348962 PIP4K2BP78356 416 aa18.74■□□□□ 0.59
PTPRO-202ENST00000348962 ANKRD20A12PQ8NF67 263 aa18.74■□□□□ 0.59
PTPRO-202ENST00000348962 SLC12A5Q9H2X9 1139 aa18.74■□□□□ 0.59
PTPRO-202ENST00000348962 PPP1R1BQ9UD71 204 aaPredicted RBP18.74■□□□□ 0.59
PTPRO-202ENST00000348962 FYB1O15117 783 aa18.73■□□□□ 0.59
PTPRO-202ENST00000348962 FOXD4L6Q3SYB3 417 aaPredicted RBP18.73■□□□□ 0.59
PTPRO-202ENST00000348962 FOXD4L3Q6VB84 417 aaPredicted RBP18.73■□□□□ 0.59
PTPRO-202ENST00000348962 LNPKQ9C0E8 428 aa18.73■□□□□ 0.59
PTPRO-202ENST00000348962 SULT6B1Q6IMI4 303 aa18.73■□□□□ 0.59
PTPRO-202ENST00000348962 DEKP35659 375 aaKnown RBP18.73■□□□□ 0.59
PTPRO-202ENST00000348962 ERICH3Q5RHP9 1530 aa18.73■□□□□ 0.59
PTPRO-202ENST00000348962 ADAMTS8Q9UP79 889 aa18.72■□□□□ 0.59
PTPRO-202ENST00000348962 CC2D2AQ9P2K1 1620 aa18.72■□□□□ 0.59
PTPRO-202ENST00000348962 SURF6O75683 361 aaKnown RBP18.72■□□□□ 0.59
PTPRO-202ENST00000348962 ANKRD30BQ9BXX2 1392 aa18.72■□□□□ 0.59
PTPRO-202ENST00000348962 POLA1P09884 1462 aaPredicted RBP18.72■□□□□ 0.59
PTPRO-202ENST00000348962 BRD4O60885 1362 aaPredicted RBP18.72■□□□□ 0.59
PTPRO-202ENST00000348962 EFCAB5A4FU69 1503 aa18.72■□□□□ 0.59
PTPRO-202ENST00000348962 SKOR2Q2VWA4 1001 aaPredicted RBP18.72■□□□□ 0.59
PTPRO-202ENST00000348962 NBPF1Q3BBV0 1214 aa18.71■□□□□ 0.59
PTPRO-202ENST00000348962 HDGFL1Q5TGJ6 251 aa18.71■□□□□ 0.59
PTPRO-202ENST00000348962 GNL3LQ9NVN8 582 aaKnown RBP18.71■□□□□ 0.59
PTPRO-202ENST00000348962 CNTLNQ9NXG0 1405 aa18.71■□□□□ 0.59
PTPRO-202ENST00000348962 SART3Q15020 963 aaKnown RBP18.7■□□□□ 0.58
PTPRO-202ENST00000348962 IPO7O95373 1038 aaKnown RBP18.7■□□□□ 0.58
PTPRO-202ENST00000348962 PPP2R1AP30153 589 aa18.7■□□□□ 0.58
PTPRO-202ENST00000348962 TWISTNBQ3B726 338 aaPredicted RBP18.7■□□□□ 0.58
PTPRO-202ENST00000348962 FSD1Q9BTV5 496 aa18.7■□□□□ 0.58
PTPRO-202ENST00000348962 SMC3Q9UQE7 1217 aa18.7■□□□□ 0.58
PTPRO-202ENST00000348962 XBP1P17861 261 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 IKQ13123 557 aaPredicted RBP18.69■□□□□ 0.58
PTPRO-202ENST00000348962 CNNM1Q9NRU3 951 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 KIAA1107Q9UPP5 1409 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 NINLQ9Y2I6 1382 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 CNTROBQ8N137 903 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 BRMS1Q9HCU9 246 aa18.69■□□□□ 0.58
PTPRO-202ENST00000348962 ATAD2Q6PL18 1390 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms