RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 POGKQ9P215 609 aa27.59■■■□□ 2.01
SYNE4-202ENST00000340477 PLEKHH1Q9ULM0 1364 aa27.57■■■□□ 2
SYNE4-202ENST00000340477 PRAM1Q96QH2 718 aa27.56■■■□□ 2
SYNE4-202ENST00000340477 TRAK1Q9UPV9 953 aa27.56■■■□□ 2
SYNE4-202ENST00000340477 ARHGEF28Q8N1W1 1705 aaKnown RBP27.54■■■□□ 2
SYNE4-202ENST00000340477 AHDC1Q5TGY3 1603 aaPredicted RBP27.53■■■□□ 2
SYNE4-202ENST00000340477 C1orf167Q5SNV9 1468 aa27.53■■■□□ 2
SYNE4-202ENST00000340477 BRINP3Q76B58 766 aa27.52■■■□□ 2
SYNE4-202ENST00000340477 FMN2Q9NZ56 1722 aa27.51■■□□□ 1.99
SYNE4-202ENST00000340477 SAFB2Q14151 953 aaKnown RBP eCLIP27.51■■□□□ 1.99
SYNE4-202ENST00000340477 TRPM1Q7Z4N2 1603 aa27.5■■□□□ 1.99
SYNE4-202ENST00000340477 NHSL1Q5SYE7 1610 aa27.49■■□□□ 1.99
SYNE4-202ENST00000340477 ADGRB2O60241 1585 aa27.48■■□□□ 1.99
SYNE4-202ENST00000340477 COL16A1Q07092 1604 aaPredicted RBP27.48■■□□□ 1.99
SYNE4-202ENST00000340477 CLSPNQ9HAW4 1339 aa27.45■■□□□ 1.99
SYNE4-202ENST00000340477 NBPF1Q3BBV0 1214 aa27.44■■□□□ 1.98
SYNE4-202ENST00000340477 ROCK2O75116 1388 aaKnown RBP27.44■■□□□ 1.98
SYNE4-202ENST00000340477 EIF3AQ14152 1382 aaKnown RBP27.43■■□□□ 1.98
SYNE4-202ENST00000340477 KIF1AQ12756 1690 aa27.41■■□□□ 1.98
SYNE4-202ENST00000340477 MED1Q15648 1581 aaPredicted RBP27.41■■□□□ 1.98
SYNE4-202ENST00000340477 JCADQ9P266 1359 aa27.41■■□□□ 1.98
SYNE4-202ENST00000340477 ESCO1Q5FWF5 840 aa27.41■■□□□ 1.98
SYNE4-202ENST00000340477 MINK1Q8N4C8 1332 aaPredicted RBP27.41■■□□□ 1.98
SYNE4-202ENST00000340477 NUTM2FA1L443 756 aa27.4■■□□□ 1.98
SYNE4-202ENST00000340477 ORAI2Q96SN7 254 aa27.39■■□□□ 1.98
SYNE4-202ENST00000340477 DISP3Q9P2K9 1392 aa27.37■■□□□ 1.97
SYNE4-202ENST00000340477 SHPRHQ149N8 1683 aa27.37■■□□□ 1.97
SYNE4-202ENST00000340477 CCER1Q8TC90 406 aaPredicted RBP27.37■■□□□ 1.97
SYNE4-202ENST00000340477 HIRIP3Q9BW71 556 aaPredicted RBP27.37■■□□□ 1.97
SYNE4-202ENST00000340477 ANKARQ7Z5J8 1434 aa27.36■■□□□ 1.97
SYNE4-202ENST00000340477 RGPD8O14715 1765 aaPredicted RBP27.35■■□□□ 1.97
SYNE4-202ENST00000340477 QRICH2Q9H0J4 1663 aa27.35■■□□□ 1.97
SYNE4-202ENST00000340477 NPHP3Q7Z494 1330 aa27.35■■□□□ 1.97
SYNE4-202ENST00000340477 CENPJQ9HC77 1338 aaPredicted RBP27.35■■□□□ 1.97
SYNE4-202ENST00000340477 RALGAPBQ86X10 1494 aa27.34■■□□□ 1.97
SYNE4-202ENST00000340477 TULP4Q9NRJ4 1543 aa27.34■■□□□ 1.97
SYNE4-202ENST00000340477 NBPF8Q3BBV2 869 aa27.33■■□□□ 1.97
SYNE4-202ENST00000340477 LRRC59Q96AG4 307 aaKnown RBP27.33■■□□□ 1.97
SYNE4-202ENST00000340477 WASLO00401 505 aaPredicted RBP27.32■■□□□ 1.96
SYNE4-202ENST00000340477 ITSN1Q15811 1721 aa27.32■■□□□ 1.96
SYNE4-202ENST00000340477 DDX17Q92841 729 aaKnown RBP27.31■■□□□ 1.96
SYNE4-202ENST00000340477 PHF23Q9BUL5 403 aaPredicted RBP27.3■■□□□ 1.96
SYNE4-202ENST00000340477 GPRASP1Q5JY77 1395 aa27.3■■□□□ 1.96
SYNE4-202ENST00000340477 USP32Q8NFA0 1604 aa27.3■■□□□ 1.96
SYNE4-202ENST00000340477 TIMELESSQ9UNS1 1208 aa27.29■■□□□ 1.96
SYNE4-202ENST00000340477 SPATA31A6Q5VVP1 1343 aa27.29■■□□□ 1.96
SYNE4-202ENST00000340477 CARD11Q9BXL7 1154 aa27.28■■□□□ 1.96
SYNE4-202ENST00000340477 PHF8Q9UPP1 1060 aa27.28■■□□□ 1.96
SYNE4-202ENST00000340477 SOS2Q07890 1332 aaPredicted RBP27.27■■□□□ 1.96
SYNE4-202ENST00000340477 FOXO3O43524 673 aa27.26■■□□□ 1.95
SYNE4-202ENST00000340477 PXDNQ92626 1479 aa27.25■■□□□ 1.95
SYNE4-202ENST00000340477 CDK19Q9BWU1 502 aa27.22■■□□□ 1.95
SYNE4-202ENST00000340477 ATP7BP35670 1465 aa27.21■■□□□ 1.95
SYNE4-202ENST00000340477 PNPLA6Q8IY17 1366 aa27.21■■□□□ 1.95
SYNE4-202ENST00000340477 SRPK2P78362 688 aaKnown RBP27.2■■□□□ 1.94
SYNE4-202ENST00000340477 XPCQ01831 940 aaPredicted RBP27.2■■□□□ 1.94
SYNE4-202ENST00000340477 PSME1Q06323 249 aa27.2■■□□□ 1.94
SYNE4-202ENST00000340477 MEX3CQ5U5Q3 659 aaKnown RBP27.2■■□□□ 1.94
SYNE4-202ENST00000340477 NUDT16Q96DE0 195 aaKnown RBP27.19■■□□□ 1.94
SYNE4-202ENST00000340477 PRR36Q9H6K5 1346 aa27.18■■□□□ 1.94
SYNE4-202ENST00000340477 TOPAZ1Q8N9V7 1692 aa27.18■■□□□ 1.94
SYNE4-202ENST00000340477 PMFBP1Q8TBY8 1022 aa27.18■■□□□ 1.94
SYNE4-202ENST00000340477 EVC2Q86UK5 1308 aa27.17■■□□□ 1.94
SYNE4-202ENST00000340477 KRT28Q7Z3Y7 464 aa27.17■■□□□ 1.94
SYNE4-202ENST00000340477 COL22A1Q8NFW1 1626 aaPredicted RBP27.16■■□□□ 1.94
SYNE4-202ENST00000340477 NUTM2BA6NNL0 878 aaPredicted RBP27.16■■□□□ 1.94
SYNE4-202ENST00000340477 NUTM2EB1AL46 878 aaPredicted RBP27.16■■□□□ 1.94
SYNE4-202ENST00000340477 NUTM2AQ8IVF1 878 aaPredicted RBP27.16■■□□□ 1.94
SYNE4-202ENST00000340477 NGDNQ8NEJ9 315 aaKnown RBP27.16■■□□□ 1.94
SYNE4-202ENST00000340477 LRP6O75581 1613 aa27.15■■□□□ 1.94
SYNE4-202ENST00000340477 CCDC61Q9Y6R9 512 aa27.13■■□□□ 1.93
SYNE4-202ENST00000340477 TNS3Q68CZ2 1445 aa27.13■■□□□ 1.93
SYNE4-202ENST00000340477 SBNO2Q9Y2G9 1366 aa27.12■■□□□ 1.93
SYNE4-202ENST00000340477 SBNO1A3KN83 1393 aa27.11■■□□□ 1.93
SYNE4-202ENST00000340477 SPATA31A3Q5VYP0 1347 aa27.11■■□□□ 1.93
SYNE4-202ENST00000340477 CABP2Q9NPB3 220 aa27.1■■□□□ 1.93
SYNE4-202ENST00000340477 ARHGEF10O15013 1369 aa27.09■■□□□ 1.93
SYNE4-202ENST00000340477 PPIP5K1Q6PFW1 1433 aa27.08■■□□□ 1.93
SYNE4-202ENST00000340477 TRPM3Q9HCF6 1732 aaPredicted RBP27.07■■□□□ 1.92
SYNE4-202ENST00000340477 LMOD2Q6P5Q4 547 aa27.07■■□□□ 1.92
SYNE4-202ENST00000340477 PLEKHG3A1L390 1219 aa27.04■■□□□ 1.92
SYNE4-202ENST00000340477 SLC24A1O60721 1099 aa27.04■■□□□ 1.92
SYNE4-202ENST00000340477 POLR3AO14802 1390 aaPredicted RBP27.04■■□□□ 1.92
SYNE4-202ENST00000340477 ATAD2Q6PL18 1390 aa27.04■■□□□ 1.92
SYNE4-202ENST00000340477 USP47Q96K76 1375 aa27.04■■□□□ 1.92
SYNE4-202ENST00000340477 ACEP12821 1306 aa27.03■■□□□ 1.92
SYNE4-202ENST00000340477 HAP1P54257 671 aaPredicted RBP27.03■■□□□ 1.92
SYNE4-202ENST00000340477 PAK3O75914 559 aaPredicted RBP27.02■■□□□ 1.92
SYNE4-202ENST00000340477 MARF1Q9Y4F3 1742 aaKnown RBP27.02■■□□□ 1.92
SYNE4-202ENST00000340477 ALS2Q96Q42 1657 aa27.01■■□□□ 1.92
SYNE4-202ENST00000340477 ADAMTS2O95450 1211 aa27.01■■□□□ 1.91
SYNE4-202ENST00000340477 C8orf37Q96NL8 207 aa27■■□□□ 1.91
SYNE4-202ENST00000340477 ST20-MTHFSA0A0A6YYL1 179 aa26.99■■□□□ 1.91
SYNE4-202ENST00000340477 ZNF772Q68DY9 489 aaPredicted RBP26.99■■□□□ 1.91
SYNE4-202ENST00000340477 ABCA3Q99758 1704 aa26.98■■□□□ 1.91
SYNE4-202ENST00000340477 CABP1Q9NZU7 370 aa26.97■■□□□ 1.91
SYNE4-202ENST00000340477 NGLY1Q96IV0 654 aa26.96■■□□□ 1.91
SYNE4-202ENST00000340477 BRD4O60885 1362 aaPredicted RBP26.96■■□□□ 1.91
SYNE4-202ENST00000340477 RGS17Q9UGC6 210 aaPredicted RBP26.95■■□□□ 1.9
SYNE4-202ENST00000340477 AFF2P51816 1311 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms