RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CAVIN1Q6NZI2 390 aaKnown RBP15.39■□□□□ 0.05
USP47-202ENST00000339865 LRRFIP2Q9Y608 721 aaKnown RBP15.39■□□□□ 0.05
USP47-202ENST00000339865 CEP63Q96MT8 703 aa15.39■□□□□ 0.05
USP47-202ENST00000339865 ROCK2O75116 1388 aaKnown RBP15.39■□□□□ 0.05
USP47-202ENST00000339865 CCP110O43303 1012 aa15.39■□□□□ 0.05
USP47-202ENST00000339865 FILIP1LQ4L180 1135 aa15.39■□□□□ 0.05
USP47-202ENST00000339865 MAGEC2Q9UBF1 373 aaPredicted RBP15.38■□□□□ 0.05
USP47-202ENST00000339865 PRKCSHP14314 528 aaPredicted RBP15.38■□□□□ 0.05
USP47-202ENST00000339865 KDM4AO75164 1064 aa15.38■□□□□ 0.05
USP47-202ENST00000339865 CCDC27Q2M243 656 aa15.37■□□□□ 0.05
USP47-202ENST00000339865 UQCRHLA0A096LP55 91 aa15.37■□□□□ 0.05
USP47-202ENST00000339865 UQCRHP07919 91 aa15.37■□□□□ 0.05
USP47-202ENST00000339865 ELL2O00472 640 aaPredicted RBP15.37■□□□□ 0.05
USP47-202ENST00000339865 NFKBIBQ15653 356 aa15.37■□□□□ 0.05
USP47-202ENST00000339865 RRP7AQ9Y3A4 280 aaKnown RBP15.37■□□□□ 0.05
USP47-202ENST00000339865 KANK1Q14678 1352 aa15.37■□□□□ 0.05
USP47-202ENST00000339865 C9orf78Q9NZ63 289 aaPredicted RBP15.36■□□□□ 0.05
USP47-202ENST00000339865 CFAP45Q9UL16 551 aa15.36■□□□□ 0.05
USP47-202ENST00000339865 BRPF3Q9ULD4 1205 aa15.36■□□□□ 0.05
USP47-202ENST00000339865 CHMP4BP1P59074 171 aa15.36■□□□□ 0.05
USP47-202ENST00000339865 MAP2K1Q02750 393 aaPredicted RBP15.35■□□□□ 0.05
USP47-202ENST00000339865 GRM1Q13255 1194 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 CCDC102AQ96A19 550 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 KINO60870 393 aaKnown RBP15.35■□□□□ 0.05
USP47-202ENST00000339865 TNNT1P13805 278 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 EIF3AQ14152 1382 aaKnown RBP15.35■□□□□ 0.05
USP47-202ENST00000339865 IL27Q8NEV9 243 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 BRMS1Q9HCU9 246 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 RABEP1Q15276 862 aa15.35■□□□□ 0.05
USP47-202ENST00000339865 CRBNQ96SW2 442 aa15.34■□□□□ 0.05
USP47-202ENST00000339865 ZNHIT6Q9NWK9 470 aaKnown RBP15.34■□□□□ 0.05
USP47-202ENST00000339865 IKQ13123 557 aaPredicted RBP15.34■□□□□ 0.05
USP47-202ENST00000339865 MTMR7Q9Y216 660 aa15.34■□□□□ 0.05
USP47-202ENST00000339865 FANCIQ9NVI1 1328 aa15.34■□□□□ 0.05
USP47-202ENST00000339865 IFIT2P09913 472 aaKnown RBP15.34■□□□□ 0.05
USP47-202ENST00000339865 SEPT11Q9NVA2 429 aaKnown RBP15.34■□□□□ 0.05
USP47-202ENST00000339865 PRDM10Q9NQV6 1147 aa15.33■□□□□ 0.05
USP47-202ENST00000339865 TRAK2O60296 914 aa15.33■□□□□ 0.05
USP47-202ENST00000339865 MPNDQ8N594 471 aa15.33■□□□□ 0.05
USP47-202ENST00000339865 RBM33Q96EV2 1170 aaKnown RBP15.33■□□□□ 0.05
USP47-202ENST00000339865 AMPHP49418 695 aa15.33■□□□□ 0.04
USP47-202ENST00000339865 CCDC112Q8NEF3 446 aa15.33■□□□□ 0.04
USP47-202ENST00000339865 SLC26A8Q96RN1 970 aa15.32■□□□□ 0.04
USP47-202ENST00000339865 ERCC6Q03468 1493 aa15.32■□□□□ 0.04
USP47-202ENST00000339865 TSPY26PQ9H489 355 aa15.32■□□□□ 0.04
USP47-202ENST00000339865 RRP9O43818 475 aaKnown RBP15.32■□□□□ 0.04
USP47-202ENST00000339865 ERLIN1O75477 346 aa15.32■□□□□ 0.04
USP47-202ENST00000339865 LETM1O95202 739 aaPredicted RBP15.32■□□□□ 0.04
USP47-202ENST00000339865 CA8P35219 290 aa15.32■□□□□ 0.04
USP47-202ENST00000339865 SERPINC1P01008 464 aa15.31■□□□□ 0.04
USP47-202ENST00000339865 RALYLQ86SE5 291 aaKnown RBP15.31■□□□□ 0.04
USP47-202ENST00000339865 FYB1O15117 783 aa15.31■□□□□ 0.04
USP47-202ENST00000339865 CEP162Q5TB80 1403 aa15.31■□□□□ 0.04
USP47-202ENST00000339865 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.31■□□□□ 0.04
USP47-202ENST00000339865 XBP1P17861 261 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 LUC7LQ9NQ29 371 aaKnown RBP15.3■□□□□ 0.04
USP47-202ENST00000339865 CCDC91Q7Z6B0 441 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 CDK5RAP3Q96JB5 506 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 COG6Q9Y2V7 657 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 INTS3Q68E01 1043 aaKnown RBP15.3■□□□□ 0.04
USP47-202ENST00000339865 TMCO3Q6UWJ1 677 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 NECTIN2Q92692 538 aa15.3■□□□□ 0.04
USP47-202ENST00000339865 CEBPZQ03701 1054 aaKnown RBP15.29■□□□□ 0.04
USP47-202ENST00000339865 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.29■□□□□ 0.042e-6■■■□□ 18.9
USP47-202ENST00000339865 PDCL3Q9H2J4 239 aa15.29■□□□□ 0.04
USP47-202ENST00000339865 TRERF1Q96PN7 1200 aa15.29■□□□□ 0.04
USP47-202ENST00000339865 PPM1EQ8WY54 764 aa15.29■□□□□ 0.04
USP47-202ENST00000339865 CCDC113Q9H0I3 377 aa15.29■□□□□ 0.04
USP47-202ENST00000339865 SPATA24Q86W54 205 aa15.29■□□□□ 0.04
USP47-202ENST00000339865 ATP2B1P20020 1258 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 GGT6Q6P531 493 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 PPFIBP1Q86W92 1011 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 EXOC6Q8TAG9 804 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 DDX11Q96FC9 970 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 STAC3Q96MF2 364 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 C22orf23Q9BZE7 217 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 DNAJC2Q99543 621 aaKnown RBP15.28■□□□□ 0.04
USP47-202ENST00000339865 SCRIBQ14160 1630 aa15.28■□□□□ 0.04
USP47-202ENST00000339865 PDE3BQ13370 1112 aa15.27■□□□□ 0.04
USP47-202ENST00000339865 STAMBPO95630 424 aa15.27■□□□□ 0.03
USP47-202ENST00000339865 PIP4K2BP78356 416 aa15.27■□□□□ 0.03
USP47-202ENST00000339865 ZKSCAN2Q63HK3 967 aa15.27■□□□□ 0.03
USP47-202ENST00000339865 BAZ1BQ9UIG0 1483 aaKnown RBP15.27■□□□□ 0.03
USP47-202ENST00000339865 TXLNAP40222 546 aa15.27■□□□□ 0.03
USP47-202ENST00000339865 PUS7Q96PZ0 661 aaKnown RBP15.27■□□□□ 0.03
USP47-202ENST00000339865 DDX23Q9BUQ8 820 aaKnown RBP15.26■□□□□ 0.03
USP47-202ENST00000339865 SHTN1A0MZ66 631 aa15.26■□□□□ 0.03
USP47-202ENST00000339865 CBX1P83916 185 aa15.26■□□□□ 0.03
USP47-202ENST00000339865 E9PSI1 815 aa15.26■□□□□ 0.03
USP47-202ENST00000339865 EIF2S2P20042 333 aaKnown RBP15.26■□□□□ 0.03
USP47-202ENST00000339865 IQCEQ6IPM2 695 aa15.26■□□□□ 0.03
USP47-202ENST00000339865 NGDNQ8NEJ9 315 aaKnown RBP15.26■□□□□ 0.03
USP47-202ENST00000339865 RRP1P56182 461 aaKnown RBP15.25■□□□□ 0.03
USP47-202ENST00000339865 PRPF40AO75400 957 aaKnown RBP15.25■□□□□ 0.03
USP47-202ENST00000339865 KRT18P05783 430 aaKnown RBP15.25■□□□□ 0.03
USP47-202ENST00000339865 CGNQ9P2M7 1197 aaKnown RBP15.25■□□□□ 0.03
USP47-202ENST00000339865 PHLDB1Q86UU1 1377 aa15.24■□□□□ 0.03
USP47-202ENST00000339865 HSP90AB4PQ58FF6 505 aa15.24■□□□□ 0.03
USP47-202ENST00000339865 CRACR2AQ9BSW2 395 aa15.24■□□□□ 0.03
USP47-202ENST00000339865 GOLGA3Q08378 1498 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms